UBERON:0010707: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0010707
|name=appendage girdle complex
|namespace=
|def="An organism subdivision that includes both an appendage and its accociated girdle region. Note...") |
No edit summary |
||
Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region) | |comment=It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region) | ||
|created_by=haendel | |created_by=haendel | ||
| | |def="An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0010707 | |||
|is_a=UBERON:0000475 ;;UBERON:0015212 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=appendage girdle complex | |||
|namespace= | |||
|obo_creation_date=2012-04-23T10:46:51Z | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="appendage complex" EXACT [UBERON:cjm];;"appendage-girdle complex" EXACT [UBERON:cjm];;"girdle plus limb or fin" EXACT [UBERON:cjm];;"limb" RELATED INCONSISTENT [FMA:7182] | ||
|union_of= | |||
|xref=FMA:7182;;VSAO:0000214 | |||
}} | }} |
Revision as of 11:50, 12 September 2014
Name: | appendage girdle complex | |
---|---|---|
Definition: | "An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003] | |
Xrefs: |
| |
Synonyms: |
"appendage complex" EXACT [UBERON:cjm] "appendage-girdle complex" EXACT [UBERON:cjm] "girdle plus limb or fin" EXACT [UBERON:cjm] "limb" RELATED INCONSISTENT [FMA:7182] | |
Comments: | It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region) | |
Created by: | haendel | |
Creation date: | 2012-04-23T10:46:51Z |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000475(organism subdivision),UBERON:0015212(lateral structure) |
---|
Children
is a: | UBERON:0010708 (pectoral complex),UBERON:0010709 (pelvic complex) |
---|---|
part of: | UBERON:0004708 (paired limb/fin),UBERON:0010740 (bone of appendage girdle complex) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
... further results Mouse (Mus musculus)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010707 (appendage girdle complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data