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{{UBERON
{{UBERON
|id=UBERON:0010707
|alt_id=
|name=appendage girdle complex
|namespace=
|def="An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003]
|xref=FMA:7182;;VSAO:0000214
|is_a=UBERON:0000475
|synonym="appendage complex" EXACT [UBERON:cjm];;"appendage-girdle complex" EXACT [UBERON:cjm];;"girdle plus limb or fin" EXACT [UBERON:cjm];;"limb" RELATED INCONSISTENT [FMA:7182]
|comment=It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither).  There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region)
|comment=It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither).  There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region)
|alt_id=
|disjoint_from=
|union_of=
|created_by=haendel
|created_by=haendel
|obo_creation_date=2012-04-23T10:46:51Z
|def="An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010707
|is_a=UBERON:0000475 ;;UBERON:0015212
|is_obsolete=
|located_in=
|located_in=
|name=appendage girdle complex
|namespace=
|obo_creation_date=2012-04-23T10:46:51Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="appendage complex" EXACT [UBERON:cjm];;"appendage-girdle complex" EXACT [UBERON:cjm];;"girdle plus limb or fin" EXACT [UBERON:cjm];;"limb" RELATED INCONSISTENT [FMA:7182]
|union_of=
|xref=FMA:7182;;VSAO:0000214
}}
}}

Revision as of 11:50, 12 September 2014

Name:appendage girdle complex
Definition:"An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003]
Xrefs:
links:

FMA:7182

VSAO:0000214
Synonyms: "appendage complex" EXACT [UBERON:cjm]
"appendage-girdle complex" EXACT [UBERON:cjm]
"girdle plus limb or fin" EXACT [UBERON:cjm]
"limb" RELATED INCONSISTENT [FMA:7182]
Comments:It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region)
Created by:haendel
Creation date:2012-04-23T10:46:51Z

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000475(organism subdivision),UBERON:0015212(lateral structure)



Children

is a:UBERON:0010708 (pectoral complex),UBERON:0010709 (pelvic complex)
part of:UBERON:0004708 (paired limb/fin),UBERON:0010740 (bone of appendage girdle complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010707 (appendage girdle complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data