FFCP PHASE1:Hg19::chr2:109204909..109204928,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=3987 | |EntrezGene=entrezgene:3987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=6616 | |HGNC=HGNC:6616 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=P48059 | |UniProt=uniprot:P48059 | ||
|association_with_transcript=0bp_to_ENST00000393310,NM_001193488,uc002teh.2_5end | |association_with_transcript=0bp_to_ENST00000393310,NM_001193488,uc002teh.2_5end | ||
|cluster_id=chr2:109204909..109204928,+ | |||
|description=CAGE_peak_3_at_LIMS1_5end | |description=CAGE_peak_3_at_LIMS1_5end | ||
|id=chr2:109204909..109204928,+ | |id=chr2:109204909..109204928,+ | ||
Revision as of 23:07, 28 July 2015
| Short description: | p3@LIMS1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_LIMS1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000393310, NM_001193488, uc002teh.2_5end |
| EntrezGene: | 3987 |
| HGNC: | 6616 |
| UniProt: | P48059 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@LIMS1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| myeloid cell | 7.57e-95 | 108 |
| common myeloid progenitor | 7.57e-95 | 108 |
| myeloid leukocyte | 3.51e-82 | 72 |
| granulocyte monocyte progenitor cell | 5.54e-74 | 67 |
| myeloid lineage restricted progenitor cell | 2.65e-73 | 66 |
| macrophage dendritic cell progenitor | 2.00e-66 | 61 |
| defensive cell | 3.07e-66 | 48 |
| phagocyte | 3.07e-66 | 48 |
| hematopoietic stem cell | 1.45e-64 | 168 |
| monopoietic cell | 2.44e-64 | 59 |
Showing 1 to 10 of 34 entries
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 9.70e-77 | 98 |
| blood island | 9.70e-77 | 98 |
| hemolymphoid system | 3.19e-69 | 108 |
| bone marrow | 3.75e-65 | 76 |
| bone element | 4.44e-61 | 82 |
| immune system | 6.61e-55 | 93 |
| skeletal element | 8.57e-54 | 90 |
| skeletal system | 2.46e-46 | 100 |
| lateral plate mesoderm | 6.47e-30 | 203 |
| musculoskeletal system | 3.23e-22 | 167 |
Showing 1 to 10 of 17 entries
| Ontology term | p-value | n |
|---|---|---|
| myeloid leukemia | 1.33e-10 | 31 |
| chronic leukemia | 2.07e-08 | 8 |
| leukemia | 1.85e-07 | 39 |
Showing 1 to 3 of 3 entries
