FFCP PHASE1:Mm9::chr4:62069804..62069899,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=70052|HGNC=|MCL_coexpression_id=734|UniProt=Q9DAW6,Q059T9|association_with_transcript=0bp_to_ENSMUST00000084524,NM_027297,uc008ter.1_5end|description=CAGE_peak_1_at_Prpf4_5end|id=chr4:62069804..62069899,+|ontology_enrichment_celltype=CL:0000542!3.46e-08!13;CL:0000051!3.46e-08!13;CL:0000838!1.24e-07!12;CL:0000084!4.16e-07!11;CL:0000827!4.16e-07!11|ontology_enrichment_celltype_v019_2=CL:0000542,3.46e-08,13;CL:0000051,3.46e-08,13;CL:0000838,1.24e-07,12;CL:0000084,4.16e-07,11;CL:0000827,4.16e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001048!2.45e-09!147;UBERON:0002368!3.23e-08!60;UBERON:0004177!1.19e-07!29;UBERON:0002530!3.61e-07!65;UBERON:0002370!5.79e-07!23;UBERON:0000974!5.79e-07!23;UBERON:0004807!5.79e-07!23;UBERON:0005058!5.79e-07!23;UBERON:0003351!5.79e-07!23;UBERON:0009113!5.79e-07!23;UBERON:0003295!5.79e-07!23;UBERON:0009722!5.79e-07!23;UBERON:0005562!5.79e-07!23;UBERON:0007690!5.79e-07!23|ontology_enrichment_uberon_v019_2=UBERON:0001048,1.11e-11,134;UBERON:0002368,3.23e-08,60;UBERON:0000153,7.68e-08,43;UBERON:0004177,1.19e-07,29;UBERON:0005057,1.19e-07,29;UBERON:0000926,2.30e-07,120;UBERON:0004120,2.30e-07,120;UBERON:0006603,2.30e-07,120;UBERON:0002530,3.61e-07,65;UBERON:0002370,5.79e-07,23;UBERON:0000974,5.79e-07,23;UBERON:0004807,5.79e-07,23;UBERON:0005058,5.79e-07,23;UBERON:0003351,5.79e-07,23;UBERON:0009113,5.79e-07,23;UBERON:0003295,5.79e-07,23;UBERON:0009722,5.79e-07,23;UBERON:0005562,5.79e-07,23;UBERON:0007690,5.79e-07,23|phase1_expression=16.0148847104794,8.02643437570531,5.0049916332849,6.35174843744343,4.50806156951712,13.9339795686869,12.3814699515629,26.4702813055231,42.3774053676517,39.7909694747389,39.3801326918661,40.2051681336496,29.960127737961,27.2751655547272,19.6534759471241,19.8425762042029,27.2829132469977,17.9813434254195,18.921791837592,26.3121584114779,18.1992640923289,21.8440092641948,30.2991755401165,9.91953021319121,8.25873411841812,5.7423196411502,7.75371593086335,11.4199753323521,13.8717096203153,9.32511480111744,20.8426680015986,35.5617177137393,23.9875267157982,15.8481681015439,17.908800424579,21.7767385419625,22.0502904763359,12.9744805528441,16.4080422349998,15.1821885752402,19.4116391050235,16.3930916390027,11.6522484727477,9.06457089424156,9.42805460341485,11.1963518818626,5.47673941043627,6.5407546914134,6.59058548203415,9.91592485278845,5.03951117851305,7.18762821824858,27.0129995752956,17.4086914082723,30.2484419228218,6.94600477297057,8.30946975822394,7.73508138416164,13.7575193384526,14.8117474196169,15.2119536841483,5.42151251310611,4.4464739805557,5.39939830368839,4.94433181283487,5.6838409195688,5.99200221036809,4.61061966385865,18.2493717662921,16.7407363531296,16.1950220240564,14.2825492201902,12.589506834242,19.3535462759627,16.1978846020819,12.8690630125403,5.50579404996943,12.896421146604,10.752457327937,13.8480602116704,13.8146341839639,13.5437476344758,13.4007839520663,11.2552522006336,11.4598685832608,14.7314292736834,14.8066548031067,14.7255562201987,13.4035362199736,12.7715936580468,26.087803983151,10.3250865237766,6.79971333707751,8.09554787456726,11.695975514058,12.5447528387254,13.6231087527799,8.862376774059,7.53379413348319,5.65343319216544,11.9716906810178,7.69958864485907,5.09610479413291,7.11066703153331,14.2884087067401,16.4683912558814,15.6712577954583,13.5878816865681,28.2242293175417,22.1178787206589,24.4614310740252,21.9215144384742,29.7493991460315,33.3097035621296,26.1046929841265,21.6146537087042,12.8541383221874,11.2787498397531,17.6922110389975,17.4708197943202,20.3174196983562,19.3950101254089,13.0474232852686,25.4719293400046,17.8029700791437,14.0501380364725,21.9261677845834,14.9975682748352,23.3809217814439,13.0317856282196,12.8100168789215,12.942398267625,14.0797699355744,9.2057564638919,10.389402227978,11.356888414743,19.8586759508117,17.6657898266332,14.1524744722858,13.6787206326208,28.3662565658694,20.921091503446,23.2280147448901,23.811361218043,20.0707672496417,21.5231050078548,17.7096259417887,13.4525752784288,36.6465587985832,29.6896545863476,23.0495972654773,19.5084201860542,21.1315909411454,20.5468778248078,13.5816210029243,24.2821805518562,10.5331978096985,15.1835265197682,22.1647529528562,20.9197030260857,20.6382932783365,19.8068267607116,17.5191104333056,14.1670246858131,15.4267112887378,16.0448421877781,15.5598572811779,13.8950757416932,15.4686258918672,15.9242440156722,14.7545233373457,15.3509986796599,14.4903076092093,14.2258803885994,13.4585567081041,16.6705472054441,10.5734010554815,12.6936271998501,27.5141843190452,28.3328739669735,22.4229382700442,20.5717195115809,14.8993289376063,15.7887269673424,10.9141684155238,14.658206970437,12.3154252312132,9.35095418593409,14.8172706210531,11.6846523125049,11.4553166433588,10.9527700289902,29.5881925486807,23.192448059775,15.7790829942313,19.3468761453049,16.4859614092482,16.9728684134571,17.453284246295,14.1705742060418,15.6998727841375,15.1778511623815,18.6765155064904,24.3593854345497,23.193961423358,27.658039823337,19.0688514105193,19.7765270996982,18.0784354764808,13.8094145976389,16.8620635846037,20.0429831627299,27.3159592401974,11.5363693777236,17.4741096944154,18.185679212192,16.5045620440159,12.5435315554475,14.4107488329952,23.1179522359991,26.5632911600502,23.9340570943015,20.4180516010997,20.7707759227852,12.8543566078447,15.0252908850505,13.7142575372386,17.717175171902,14.1914744105164,16.7140581010053,17.4411831684555,15.1881511510587,13.5712155545345,9.24639662491806,17.7035138286853,16.8321415245887,13.4862495589745,13.5965556446956,18.5246488275643,22.7223834483936,23.9786246756355,21.0836921920185,18.9572590004863,18.161628644394,15.81870585985,15.286132662597,19.02610297872,13.151513606009,16.2067988958075,18.9579576688866,14.3359486060351,20.2994788180671,18.2433394476005,15.8371318053634,13.2745138339963,20.3935734370184,17.2324427469908,9.8074641473067,12.1073776081117,11.3751004739253,12.9214146584111,15.2684166380552,11.4079161083111,13.2735438333043,8.4334886859999,7.21948802737308,16.3411010761818,22.1475145658512,17.9808570458029,18.6473220477485,19.1527452333655,15.161349496176,17.1130981426206,14.9187825066154,15.9576761483323,13.5572525352845,11.9085334949679,12.036696464728,18.2454802166373,16.8876189798836,15.757149408414,12.6388492803697,9.91034844541493,15.0194494628513,16.5744754373917,18.3684312487268,19.4454253738197,21.2856356415301,21.734382207643,18.0734756833153,24.1369370591275,19.4532518729885,19.6243962802282,14.3200592702267,28.3120714255116,24.3983360552218,18.5769186213498,15.0543573130417,13.3201163885168,12.812112906558,11.075563067195,6.54389854960074,12.1838074894285,9.32008969630389,35.512655137104,24.5207135512125,22.9987301735366,18.8617652693726,20.665571756437,24.4986381961628,20.5375167630069,22.0045410386276,23.4884931513592,20.5346502702105,31.6833006883652,20.8567339614598,21.4888728207574,24.1370749337344,24.5550355428033,23.0944437411051,25.0338507024394,24.3996762525537,28.651768271868,27.7657737357406,23.395489643085,25.912329580168,20.076323432389,26.3620446094503,19.1678119577773,12.6969014824518,25.0844127312693,35.4369733607429,22.8323078255147,13.1368923941889,11.0732660516197,17.948859178192,13.076471123823,14.0440189129902,13.5540442228096,13.3494318587081,12.0308057822273,10.1393377582776,11.6464028361009,12.0863023582352,12.8254275044043,10.3573876741571,10.8754178156209,6.73088405277366,26.1544115912125,21.5473431636557,22.5368359595457,18.9623239313269,17.8171188233785,10.8467669985508,12.0013233012872,11.9500333198559,9.62757628775446,13.8983466470089,12.673964994512,14.9014809695,13.2970940607233,14.4056592910956,14.6460445836814,12.3836359733599,12.2837385501547,13.8894638733868,16.4834360321323,14.8670909335741,12.343293085875,11.5359274003569,14.5446075867866,12.3544454137479,13.2694226385616,13.7921810863433,12.8049581010941,13.6796249947678,14.2594319538155,11.2228454331548,13.7616621024042,13.1010961559499,11.0492381655816,13.634442024365,12.5389297137742,19.4852250791598,12.1644436391612,12.247650080753,12.6250299165437,16.3237650148441,15.5351449865682|short_description=p1@Prpf4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:70052 | |||
|HGNC= | |||
|MCL_coexpression_id=734 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9DAW6,uniprot:Q059T9 | |||
|association_with_transcript=0bp_to_ENSMUST00000084524,NM_027297,uc008ter.1_5end | |||
|cluster_id=chr4:62069804..62069899,+ | |||
|description=CAGE_peak_1_at_Prpf4_5end | |||
|id=chr4:62069804..62069899,+ | |||
|ontology_enrichment_celltype=CL:0000542!3.46e-08!13;CL:0000051!3.46e-08!13;CL:0000838!1.24e-07!12;CL:0000084!4.16e-07!11;CL:0000827!4.16e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.46e-08,13;CL:0000051,3.46e-08,13;CL:0000838,1.24e-07,12;CL:0000084,4.16e-07,11;CL:0000827,4.16e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001048!2.45e-09!147;UBERON:0002368!3.23e-08!60;UBERON:0004177!1.19e-07!29;UBERON:0002530!3.61e-07!65;UBERON:0002370!5.79e-07!23;UBERON:0000974!5.79e-07!23;UBERON:0004807!5.79e-07!23;UBERON:0005058!5.79e-07!23;UBERON:0003351!5.79e-07!23;UBERON:0009113!5.79e-07!23;UBERON:0003295!5.79e-07!23;UBERON:0009722!5.79e-07!23;UBERON:0005562!5.79e-07!23;UBERON:0007690!5.79e-07!23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001048,1.11e-11,134;UBERON:0002368,3.23e-08,60;UBERON:0000153,7.68e-08,43;UBERON:0004177,1.19e-07,29;UBERON:0005057,1.19e-07,29;UBERON:0000926,2.30e-07,120;UBERON:0004120,2.30e-07,120;UBERON:0006603,2.30e-07,120;UBERON:0002530,3.61e-07,65;UBERON:0002370,5.79e-07,23;UBERON:0000974,5.79e-07,23;UBERON:0004807,5.79e-07,23;UBERON:0005058,5.79e-07,23;UBERON:0003351,5.79e-07,23;UBERON:0009113,5.79e-07,23;UBERON:0003295,5.79e-07,23;UBERON:0009722,5.79e-07,23;UBERON:0005562,5.79e-07,23;UBERON:0007690,5.79e-07,23 | |||
|phase1_expression=16.0148847104794,8.02643437570531,5.0049916332849,6.35174843744343,4.50806156951712,13.9339795686869,12.3814699515629,26.4702813055231,42.3774053676517,39.7909694747389,39.3801326918661,40.2051681336496,29.960127737961,27.2751655547272,19.6534759471241,19.8425762042029,27.2829132469977,17.9813434254195,18.921791837592,26.3121584114779,18.1992640923289,21.8440092641948,30.2991755401165,9.91953021319121,8.25873411841812,5.7423196411502,7.75371593086335,11.4199753323521,13.8717096203153,9.32511480111744,20.8426680015986,35.5617177137393,23.9875267157982,15.8481681015439,17.908800424579,21.7767385419625,22.0502904763359,12.9744805528441,16.4080422349998,15.1821885752402,19.4116391050235,16.3930916390027,11.6522484727477,9.06457089424156,9.42805460341485,11.1963518818626,5.47673941043627,6.5407546914134,6.59058548203415,9.91592485278845,5.03951117851305,7.18762821824858,27.0129995752956,17.4086914082723,30.2484419228218,6.94600477297057,8.30946975822394,7.73508138416164,13.7575193384526,14.8117474196169,15.2119536841483,5.42151251310611,4.4464739805557,5.39939830368839,4.94433181283487,5.6838409195688,5.99200221036809,4.61061966385865,18.2493717662921,16.7407363531296,16.1950220240564,14.2825492201902,12.589506834242,19.3535462759627,16.1978846020819,12.8690630125403,5.50579404996943,12.896421146604,10.752457327937,13.8480602116704,13.8146341839639,13.5437476344758,13.4007839520663,11.2552522006336,11.4598685832608,14.7314292736834,14.8066548031067,14.7255562201987,13.4035362199736,12.7715936580468,26.087803983151,10.3250865237766,6.79971333707751,8.09554787456726,11.695975514058,12.5447528387254,13.6231087527799,8.862376774059,7.53379413348319,5.65343319216544,11.9716906810178,7.69958864485907,5.09610479413291,7.11066703153331,14.2884087067401,16.4683912558814,15.6712577954583,13.5878816865681,28.2242293175417,22.1178787206589,24.4614310740252,21.9215144384742,29.7493991460315,33.3097035621296,26.1046929841265,21.6146537087042,12.8541383221874,11.2787498397531,17.6922110389975,17.4708197943202,20.3174196983562,19.3950101254089,13.0474232852686,25.4719293400046,17.8029700791437,14.0501380364725,21.9261677845834,14.9975682748352,23.3809217814439,13.0317856282196,12.8100168789215,12.942398267625,14.0797699355744,9.2057564638919,10.389402227978,11.356888414743,19.8586759508117,17.6657898266332,14.1524744722858,13.6787206326208,28.3662565658694,20.921091503446,23.2280147448901,23.811361218043,20.0707672496417,21.5231050078548,17.7096259417887,13.4525752784288,36.6465587985832,29.6896545863476,23.0495972654773,19.5084201860542,21.1315909411454,20.5468778248078,13.5816210029243,24.2821805518562,10.5331978096985,15.1835265197682,22.1647529528562,20.9197030260857,20.6382932783365,19.8068267607116,17.5191104333056,14.1670246858131,15.4267112887378,16.0448421877781,15.5598572811779,13.8950757416932,15.4686258918672,15.9242440156722,14.7545233373457,15.3509986796599,14.4903076092093,14.2258803885994,13.4585567081041,16.6705472054441,10.5734010554815,12.6936271998501,27.5141843190452,28.3328739669735,22.4229382700442,20.5717195115809,14.8993289376063,15.7887269673424,10.9141684155238,14.658206970437,12.3154252312132,9.35095418593409,14.8172706210531,11.6846523125049,11.4553166433588,10.9527700289902,29.5881925486807,23.192448059775,15.7790829942313,19.3468761453049,16.4859614092482,16.9728684134571,17.453284246295,14.1705742060418,15.6998727841375,15.1778511623815,18.6765155064904,24.3593854345497,23.193961423358,27.658039823337,19.0688514105193,19.7765270996982,18.0784354764808,13.8094145976389,16.8620635846037,20.0429831627299,27.3159592401974,11.5363693777236,17.4741096944154,18.185679212192,16.5045620440159,12.5435315554475,14.4107488329952,23.1179522359991,26.5632911600502,23.9340570943015,20.4180516010997,20.7707759227852,12.8543566078447,15.0252908850505,13.7142575372386,17.717175171902,14.1914744105164,16.7140581010053,17.4411831684555,15.1881511510587,13.5712155545345,9.24639662491806,17.7035138286853,16.8321415245887,13.4862495589745,13.5965556446956,18.5246488275643,22.7223834483936,23.9786246756355,21.0836921920185,18.9572590004863,18.161628644394,15.81870585985,15.286132662597,19.02610297872,13.151513606009,16.2067988958075,18.9579576688866,14.3359486060351,20.2994788180671,18.2433394476005,15.8371318053634,13.2745138339963,20.3935734370184,17.2324427469908,9.8074641473067,12.1073776081117,11.3751004739253,12.9214146584111,15.2684166380552,11.4079161083111,13.2735438333043,8.4334886859999,7.21948802737308,16.3411010761818,22.1475145658512,17.9808570458029,18.6473220477485,19.1527452333655,15.161349496176,17.1130981426206,14.9187825066154,15.9576761483323,13.5572525352845,11.9085334949679,12.036696464728,18.2454802166373,16.8876189798836,15.757149408414,12.6388492803697,9.91034844541493,15.0194494628513,16.5744754373917,18.3684312487268,19.4454253738197,21.2856356415301,21.734382207643,18.0734756833153,24.1369370591275,19.4532518729885,19.6243962802282,14.3200592702267,28.3120714255116,24.3983360552218,18.5769186213498,15.0543573130417,13.3201163885168,12.812112906558,11.075563067195,6.54389854960074,12.1838074894285,9.32008969630389,35.512655137104,24.5207135512125,22.9987301735366,18.8617652693726,20.665571756437,24.4986381961628,20.5375167630069,22.0045410386276,23.4884931513592,20.5346502702105,31.6833006883652,20.8567339614598,21.4888728207574,24.1370749337344,24.5550355428033,23.0944437411051,25.0338507024394,24.3996762525537,28.651768271868,27.7657737357406,23.395489643085,25.912329580168,20.076323432389,26.3620446094503,19.1678119577773,12.6969014824518,25.0844127312693,35.4369733607429,22.8323078255147,13.1368923941889,11.0732660516197,17.948859178192,13.076471123823,14.0440189129902,13.5540442228096,13.3494318587081,12.0308057822273,10.1393377582776,11.6464028361009,12.0863023582352,12.8254275044043,10.3573876741571,10.8754178156209,6.73088405277366,26.1544115912125,21.5473431636557,22.5368359595457,18.9623239313269,17.8171188233785,10.8467669985508,12.0013233012872,11.9500333198559,9.62757628775446,13.8983466470089,12.673964994512,14.9014809695,13.2970940607233,14.4056592910956,14.6460445836814,12.3836359733599,12.2837385501547,13.8894638733868,16.4834360321323,14.8670909335741,12.343293085875,11.5359274003569,14.5446075867866,12.3544454137479,13.2694226385616,13.7921810863433,12.8049581010941,13.6796249947678,14.2594319538155,11.2228454331548,13.7616621024042,13.1010961559499,11.0492381655816,13.634442024365,12.5389297137742,19.4852250791598,12.1644436391612,12.247650080753,12.6250299165437,16.3237650148441,15.5351449865682 | |||
|short_description=p1@Prpf4 | |||
}} |
Revision as of 16:04, 5 August 2015
Short description: | p1@Prpf4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Prpf4_5end |
Coexpression cluster: | MCL_coexpression_mm9:734 |
Association with transcript: | 0bp_to_ENSMUST00000084524, NM_027297, uc008ter.1_5end |
EntrezGene: | 70052 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.46e-08 | 13 |
common lymphoid progenitor | 3.46e-08 | 13 |
lymphoid lineage restricted progenitor cell | 1.24e-07 | 12 |
T cell | 4.16e-07 | 11 |
pro-T cell | 4.16e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
primordium | 1.11e-11 | 134 |
endocrine gland | 3.23e-08 | 60 |
anterior region of body | 7.68e-08 | 43 |
hemopoietic organ | 1.19e-07 | 29 |
immune organ | 1.19e-07 | 29 |
mesoderm | 2.30e-07 | 120 |
mesoderm-derived structure | 2.30e-07 | 120 |
presumptive mesoderm | 2.30e-07 | 120 |
gland | 3.61e-07 | 65 |
thymus | 5.79e-07 | 23 |
neck | 5.79e-07 | 23 |
respiratory system epithelium | 5.79e-07 | 23 |
hemolymphoid system gland | 5.79e-07 | 23 |
pharyngeal epithelium | 5.79e-07 | 23 |
thymic region | 5.79e-07 | 23 |
pharyngeal gland | 5.79e-07 | 23 |
entire pharyngeal arch endoderm | 5.79e-07 | 23 |
thymus primordium | 5.79e-07 | 23 |
early pharyngeal endoderm | 5.79e-07 | 23 |