FFCP PHASE1:Hg19::chr10:118898078..118898093,-: Difference between revisions
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=11023 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=12660 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q5SQQ9 | ||
|association_with_transcript=-266bp_to_ENST00000277905,ENST00000369206,NM_001112704,NM_199131,uc001ldb.1,uc009xyx.2_5end | |association_with_transcript=-266bp_to_ENST00000277905,ENST00000369206,NM_001112704,NM_199131,uc001ldb.1,uc009xyx.2_5end | ||
|cluster_id=chr10:118898078..118898093,- | |cluster_id=chr10:118898078..118898093,- | ||
Latest revision as of 15:11, 16 September 2015
| Short description: | p3@VAX1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_VAX1_5end |
| Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
| Association with transcript: | -266bp_to_ENST00000277905, ENST00000369206, NM_001112704, NM_199131, uc001ldb.1, uc009xyx.2_5end |
| EntrezGene: | VAX1 |
| HGNC: | 12660 |
| UniProt: | Q5SQQ9 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@VAX1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| astrocyte of the cerebral cortex | 1.20e-10 | 3 |
Showing 1 to 1 of 1 entries
| Ontology term | p-value | n |
|---|---|---|
| cranial nerve II | 2.37e-29 | 1 |
| cranial nerve | 2.37e-29 | 1 |
| nerve trunk | 2.37e-29 | 1 |
| nerve connecting eye with brain | 2.37e-29 | 1 |
| nerve | 2.37e-29 | 1 |
| retinal neural layer | 2.37e-29 | 1 |
| presumptive neural retina | 2.37e-29 | 1 |
| neural tissue | 2.05e-15 | 2 |
| multi cell component structure | 2.05e-15 | 2 |
| neuron projection bundle | 2.05e-15 | 2 |
Showing 1 to 10 of 15 entries
| Ontology term | p-value | n |
|---|---|---|
| neuroectodermal tumor | 2.55e-26 | 10 |
| germ cell and embryonal cancer | 2.09e-12 | 22 |
| germ cell cancer | 2.09e-12 | 22 |
Showing 1 to 3 of 3 entries
