FFCP PHASE2:Hg19::chr1:65432157..65432168,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:3716 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:6190 |TSSclass...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=3716 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=6190 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P23458 | ||
|association_with_transcript=18bp_to_ENST00000342505,NM_002227,uc001dbu.1_5end | |association_with_transcript=18bp_to_ENST00000342505,NM_002227,uc001dbu.1_5end | ||
|cluster_id=chr1:65432157..65432168,- | |cluster_id=chr1:65432157..65432168,- | ||
Latest revision as of 22:14, 18 September 2015
| Short description: | p2@JAK1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_JAK1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 18bp_to_ENST00000342505, NM_002227, uc001dbu.1_5end |
| EntrezGene: | JAK1 |
| HGNC: | 6190 |
| UniProt: | P23458 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@JAK1 |
|---|
0
5
10
15
20
25
30
35
40
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| classical monocyte | 9.97e-12 | 42 |
| CD14-positive, CD16-negative classical monocyte | 9.97e-12 | 42 |
| endothelial cell of vascular tree | 9.48e-10 | 24 |
| defensive cell | 6.42e-09 | 48 |
| phagocyte | 6.42e-09 | 48 |
| myeloid leukocyte | 2.64e-08 | 72 |
| leukocyte | 4.40e-08 | 136 |
| nongranular leukocyte | 1.28e-07 | 115 |
| multi fate stem cell | 2.19e-07 | 427 |
| meso-epithelial cell | 2.36e-07 | 45 |
Showing 1 to 10 of 12 entries
| Ontology term | p-value | n |
|---|---|---|
| lateral plate mesoderm | 2.45e-10 | 203 |
| hemolymphoid system | 7.50e-09 | 108 |
| mesoderm | 2.99e-08 | 315 |
| mesoderm-derived structure | 2.99e-08 | 315 |
| presumptive mesoderm | 2.99e-08 | 315 |
| cardiovascular system | 4.47e-08 | 109 |
| hematopoietic system | 9.83e-08 | 98 |
| blood island | 9.83e-08 | 98 |
| circulatory system | 2.64e-07 | 112 |
| immune system | 7.65e-07 | 93 |
Showing 1 to 10 of 10 entries
