Personal tools

MCL coexpression mm9:233

From FANTOM5_SSTAR

Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:67000447..67000459,-p@chr10:67000447..67000459
-
Mm9::chr10:79622451..79622464,-p@chr10:79622451..79622464
-
Mm9::chr11:3005053..3005065,+p@chr11:3005053..3005065
+
Mm9::chr12:56567352..56567359,-p@chr12:56567352..56567359
-
Mm9::chr14:75579610..75579615,+p@chr14:75579610..75579615
+
Mm9::chr15:101096964..101096995,-p@chr15:101096964..101096995
-
Mm9::chr15:72979452..72979460,+p@chr15:72979452..72979460
+
Mm9::chr15:78603087..78603092,+p@chr15:78603087..78603092
+
Mm9::chr16:90283464..90283475,+p@chr16:90283464..90283475
+
Mm9::chr17:21587220..21587237,-p@chr17:21587220..21587237
-
Mm9::chr17:29631445..29631468,+p@chr17:29631445..29631468
+
Mm9::chr17:8068222..8068232,+p@chr17:8068222..8068232
+
Mm9::chr17:8068242..8068258,+p@chr17:8068242..8068258
+
Mm9::chr1:140033030..140033043,-p@chr1:140033030..140033043
-
Mm9::chr1:140072205..140072214,+p@chr1:140072205..140072214
+
Mm9::chr1:164501625..164501636,-p@chr1:164501625..164501636
-
Mm9::chr1:51535234..51535250,-p1@Obfc2a
Mm9::chr1:58770222..58770225,+p15@Cflar
Mm9::chr1:92953069..92953085,-p@chr1:92953069..92953085
-
Mm9::chr1:92959315..92959328,+p@chr1:92959315..92959328
+
Mm9::chr2:73323384..73323388,+p@chr2:73323384..73323388
+
Mm9::chr3:40550589..40550592,+p@chr3:40550589..40550592
+
Mm9::chr4:116793059..116793074,-p@chr4:116793059..116793074
-
Mm9::chr5:115939839..115939849,-p@chr5:115939839..115939849
-
Mm9::chr5:115939964..115939990,-p@chr5:115939964..115939990
-
Mm9::chr5:38611621..38611635,-p2@Zbtb49
Mm9::chr6:129183076..129183130,+p@chr6:129183076..129183130
+
Mm9::chr6:129187104..129187117,-p@chr6:129187104..129187117
-
Mm9::chr6:129187277..129187288,+p@chr6:129187277..129187288
+
Mm9::chr6:129234454..129234459,-p@chr6:129234454..129234459
-
Mm9::chr7:108450534..108450596,-p1@Atg16l2
Mm9::chr7:31204698..31204711,+p@chr7:31204698..31204711
+
Mm9::chr7:97277849..97277866,-p@chr7:97277849..97277866
-
Mm9::chr8:23817098..23817104,+p@chr8:23817098..23817104
+
Mm9::chr9:44795249..44795263,-p@chr9:44795249..44795263
-
Mm9::chr9:44795268..44795283,-p@chr9:44795268..44795283
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0043154negative regulation of caspase activity0.0249801416016453
GO:0030693caspase activity0.0416153195043072
GO:0003697single-stranded DNA binding0.0416153195043072
GO:0043281regulation of caspase activity0.0483632233160235



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000935456
MA0004.10.468477
MA0006.10.578071
MA0007.10.0536384
MA0009.10.319708
MA0014.10.00180501
MA0017.10.0841017
MA0019.10.558564
MA0024.10.286848
MA0025.11.2713
MA0027.11.86664
MA0028.10.37014
MA0029.10.270957
MA0030.10.756624
MA0031.10.697945
MA0038.10.395619
MA0040.10.877597
MA0041.10.138104
MA0042.10.126435
MA0043.11.81052
MA0046.10.347468
MA0048.10.393553
MA0050.10.549684
MA0051.11.31659
MA0052.11.60045
MA0055.11.30542
MA0056.10
MA0057.10.0285887
MA0058.10.288373
MA0059.10.131258
MA0060.10.17896
MA0061.11.25335
MA0063.10
MA0066.10.11962
MA0067.11.47742
MA0068.10.706886
MA0069.10.335786
MA0070.10.328303
MA0071.10.547889
MA0072.10.321801
MA0073.10.361203
MA0074.10.332473
MA0076.10.741873
MA0077.10.823879
MA0078.10.148951
MA0081.10.631726
MA0083.13.70545
MA0084.10.910864
MA0087.10.360752
MA0088.10.271712
MA0089.10
MA0090.10.708046
MA0091.10.0641166
MA0092.11.09274
MA0093.10.390267
MA0095.10
MA0098.10
MA0100.10.654154
MA0101.10.929681
MA0103.10.229489
MA0105.10.406615
MA0106.10.153484
MA0107.11.01687
MA0108.21.12169
MA0109.10
MA0111.10.0518462
MA0113.10.137307
MA0114.10.109325
MA0115.10.398164
MA0116.10.34492
MA0117.10.372208
MA0119.10.0349497
MA0122.10.388118
MA0124.10.560604
MA0125.10.496324
MA0130.10
MA0131.10.551578
MA0132.10
MA0133.10
MA0135.10.425686
MA0136.11.19392
MA0139.10.127566
MA0140.11.0882
MA0141.12.02546
MA0142.12.72209
MA0143.10.880912
MA0144.10.237111
MA0145.10.124723
MA0146.10.00403676
MA0147.10.454096
MA0148.10.232527
MA0149.10.0363416
MA0062.21.12534
MA0035.20.323402
MA0039.20.0303508
MA0138.20.183173
MA0002.20.867732
MA0137.20.480594
MA0104.20.286392
MA0047.20.78783
MA0112.20.0127088
MA0065.20.0326101
MA0150.10.438025
MA0151.10
MA0152.10.125121
MA0153.10.43947
MA0154.10.148581
MA0155.10.00602147
MA0156.11.08302
MA0157.10.62294
MA0158.10
MA0159.10.486651
MA0160.10.235961
MA0161.10
MA0162.10.0572037
MA0163.10.00201546
MA0164.10.359295
MA0080.21.84097
MA0018.21.79088
MA0099.21.01567
MA0079.20.00136706
MA0102.22.20616
MA0258.10.0950215
MA0259.10.420519
MA0442.10