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MCL coexpression mm9:3413: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003056!5.73e-13!49;UBERON:0002346!6.80e-12!64;UBERON:0003075!6.80e-12!64;UBERON:0007284!6.80e-12!64;UBERON:0004121!1.33e-09!95;UBERON:0000924!1.33e-09!95;UBERON:0006601!1.33e-09!95;UBERON:0010371!1.47e-09!73;UBERON:0001017!1.15e-08!73;UBERON:0001016!3.12e-08!75;UBERON:0001049!4.59e-08!52;UBERON:0005068!4.59e-08!52;UBERON:0006241!4.59e-08!52;UBERON:0007135!4.59e-08!52;UBERON:0000020!6.02e-08!12;UBERON:0001032!6.02e-08!12;UBERON:0004456!6.02e-08!12;UBERON:0003080!6.44e-08!40;UBERON:0002780!7.25e-08!39;UBERON:0001890!7.25e-08!39;UBERON:0006240!7.25e-08!39;UBERON:0000468!7.90e-08!333;UBERON:0000073!1.04e-07!54;UBERON:0000922!1.52e-07!320;UBERON:0000033!1.96e-07!13;UBERON:0000970!2.50e-07!9;UBERON:0000019!2.50e-07!9;UBERON:0000047!2.50e-07!9;UBERON:0010312!2.50e-07!9;UBERON:0004088!2.50e-07!9;UBERON:0002104!2.50e-07!9;UBERON:0001456!2.50e-07!9;UBERON:0003072!2.50e-07!9;UBERON:0004128!2.50e-07!9;UBERON:0003071!2.50e-07!9;UBERON:0000955!4.74e-07!47;UBERON:0006238!4.74e-07!47;UBERON:0002616!5.13e-07!46;UBERON:0000007!9.22e-07!8;UBERON:0003296!9.22e-07!8;UBERON:0010133!9.22e-07!8
}}
}}

Revision as of 20:01, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:63703318..63703329,-p1@uc008pka.1
Mm9::chr3:63703332..63703354,-p2@Plch1
Mm9::chr3:63703359..63703399,-p1@Plch1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
pre-chordal neural plate5.73e-1349
neurectoderm6.80e-1264
neural plate6.80e-1264
presumptive neural plate6.80e-1264
ectoderm-derived structure1.33e-0995
ectoderm1.33e-0995
presumptive ectoderm1.33e-0995
ecto-epithelium1.47e-0973
central nervous system1.15e-0873
nervous system3.12e-0875
neural tube4.59e-0852
neural rod4.59e-0852
future spinal cord4.59e-0852
neural keel4.59e-0852
sense organ6.02e-0812
sensory system6.02e-0812
entire sense organ system6.02e-0812
anterior neural tube6.44e-0840
regional part of forebrain7.25e-0839
forebrain7.25e-0839
future forebrain7.25e-0839
multi-cellular organism7.90e-08333
regional part of nervous system1.04e-0754
embryo1.52e-07320
head1.96e-0713
eye2.50e-079
camera-type eye2.50e-079
simple eye2.50e-079
immature eye2.50e-079
ocular region2.50e-079
visual system2.50e-079
face2.50e-079
optic cup2.50e-079
optic vesicle2.50e-079
eye primordium2.50e-079
brain4.74e-0747
future brain4.74e-0747
regional part of brain5.13e-0746
pituitary gland9.22e-078
gland of diencephalon9.22e-078
neuroendocrine gland9.22e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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