FFCP PHASE1:Hg19::chr2:238243426..238243476,-: Difference between revisions
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|ontology_enrichment_celltype=CL:0000055!9.12e-43!180;CL:0000057!5.74e-32!75;CL:0000048!2.91e-17!430;CL:0000183!3.72e-17!59;CL:0000680!1.26e-16!57;CL:0000056!1.26e-16!57;CL:0000355!1.26e-16!57;CL:0000187!2.37e-16!54;CL:0000723!3.77e-16!436;CL:0000034!4.68e-15!444;CL:0000393!1.27e-13!60;CL:0000211!1.27e-13!60;CL:0002620!1.50e-13!23;CL:0000192!1.50e-11!42;CL:0000514!1.50e-11!42;CL:0002320!2.06e-09!365;CL:0002371!2.48e-08!591;CL:0000499!1.14e-07!27;CL:0000134!1.61e-07!358;CL:0002334!2.36e-07!12;CL:0000359!3.77e-07!32;CL:0002570!6.60e-07!8 | |ontology_enrichment_celltype=CL:0000055!9.12e-43!180;CL:0000057!5.74e-32!75;CL:0000048!2.91e-17!430;CL:0000183!3.72e-17!59;CL:0000680!1.26e-16!57;CL:0000056!1.26e-16!57;CL:0000355!1.26e-16!57;CL:0000187!2.37e-16!54;CL:0000723!3.77e-16!436;CL:0000034!4.68e-15!444;CL:0000393!1.27e-13!60;CL:0000211!1.27e-13!60;CL:0002620!1.50e-13!23;CL:0000192!1.50e-11!42;CL:0000514!1.50e-11!42;CL:0002320!2.06e-09!365;CL:0002371!2.48e-08!591;CL:0000499!1.14e-07!27;CL:0000134!1.61e-07!358;CL:0002334!2.36e-07!12;CL:0000359!3.77e-07!32;CL:0002570!6.60e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.07e-15;23!CL:0000057;3.33e-13;73!CL:0000723;5.35e-11;61!CL:0000134;9.07e-11;55!CL:0002320;2.67e-10;188!CL:0000499;1.46e-09;28!CL:0000048;1.57e-09;58!CL:0002570;2.95e-08;8!CL:0000187;4.42e-08;55!CL:0000327;7.53e-08;15!CL:0002334;7.83e-08;12!CL:0000034;1.90e-07;69!CL:0002539;4.39e-07;10 | |ontology_enrichment_celltype_v019=CL:0002620;1.07e-15;23!CL:0000057;3.33e-13;73!CL:0000723;5.35e-11;61!CL:0000134;9.07e-11;55!CL:0002320;2.67e-10;188!CL:0000499;1.46e-09;28!CL:0000048;1.57e-09;58!CL:0002570;2.95e-08;8!CL:0000187;4.42e-08;55!CL:0000327;7.53e-08;15!CL:0002334;7.83e-08;12!CL:0000034;1.90e-07;69!CL:0002539;4.39e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.41e-33,76;CL:0000048,3.51e-23,427;CL:0000723,3.75e-22,433;CL:0000034,7.83e-21,441;CL:0002320,1.17e-15,361;CL:0002620,1.21e-15,23;CL:0000680,5.14e-13,58;CL:0000056,5.14e-13,58;CL:0000355,5.14e-13,58;CL:0000134,8.50e-13,354;CL:0000187,1.84e-12,55;CL:0000393,3.78e-10,61;CL:0000211,3.78e-10,61;CL:0000219,6.64e-10,386;CL:0000499,1.82e-09,28;CL:0002570,2.39e-08,8;CL:0000192,8.77e-08,43;CL:0000514,8.77e-08,43;CL:0002334,9.52e-08,12;CL:0000327,9.72e-08,15;CL:0002539,3.76e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000355;6.72e-08;58 | |ontology_enrichment_development_v019=CL:0000355;6.72e-08;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.23e-23!83;UBERON:0002329!4.23e-23!83;UBERON:0003077!4.23e-23!83;UBERON:0003059!4.23e-23!83;UBERON:0007282!4.23e-23!83;UBERON:0009618!4.23e-23!83;UBERON:0007285!4.23e-23!83;UBERON:0004290!2.74e-21!70;UBERON:0002385!7.41e-18!63;UBERON:0001015!7.41e-18!63;UBERON:0000383!7.41e-18!63;UBERON:0001134!1.13e-17!61;UBERON:0002036!1.13e-17!61;UBERON:0003082!1.13e-17!61;UBERON:0000486!2.74e-17!82;UBERON:0005256!4.62e-17!143;UBERON:0003102!5.80e-14!95;UBERON:0002199!3.15e-13!45;UBERON:0002416!3.15e-13!45;UBERON:0002100!6.06e-11!216;UBERON:0002097!1.99e-10!40;UBERON:0002384!2.70e-10!375;UBERON:0001013!5.31e-09!14;UBERON:0000475!8.93e-09!365;UBERON:0003104!2.31e-07!238;UBERON:0009142!2.31e-07!238;UBERON:0001135!4.31e-07!15;UBERON:0007100!6.53e-07!27 | |ontology_enrichment_uberon=UBERON:0000914!4.23e-23!83;UBERON:0002329!4.23e-23!83;UBERON:0003077!4.23e-23!83;UBERON:0003059!4.23e-23!83;UBERON:0007282!4.23e-23!83;UBERON:0009618!4.23e-23!83;UBERON:0007285!4.23e-23!83;UBERON:0004290!2.74e-21!70;UBERON:0002385!7.41e-18!63;UBERON:0001015!7.41e-18!63;UBERON:0000383!7.41e-18!63;UBERON:0001134!1.13e-17!61;UBERON:0002036!1.13e-17!61;UBERON:0003082!1.13e-17!61;UBERON:0000486!2.74e-17!82;UBERON:0005256!4.62e-17!143;UBERON:0003102!5.80e-14!95;UBERON:0002199!3.15e-13!45;UBERON:0002416!3.15e-13!45;UBERON:0002100!6.06e-11!216;UBERON:0002097!1.99e-10!40;UBERON:0002384!2.70e-10!375;UBERON:0001013!5.31e-09!14;UBERON:0000475!8.93e-09!365;UBERON:0003104!2.31e-07!238;UBERON:0009142!2.31e-07!238;UBERON:0001135!4.31e-07!15;UBERON:0007100!6.53e-07!27 | ||
|ontology_enrichment_uberon_v019=UBERON:0002385;3.05e-12;31!UBERON:0001015;3.05e-12;31!UBERON:0000383;3.05e-12;31!UBERON:0002384;5.44e-12;198!UBERON:0002199;8.59e-11;46!UBERON:0002416;8.59e-11;46!UBERON:0002097;7.75e-10;41!UBERON:0001013;8.07e-10;14!UBERON:0002204;4.46e-09;70!UBERON:0003102;6.04e-09;50!UBERON:0001134;3.12e-07;16!UBERON:0002036;3.12e-07;16!UBERON:0004237;4.39e-07;10!UBERON:0004695;4.39e-07;10!UBERON:0002111;4.39e-07;10!UBERON:0004178;4.39e-07;10!UBERON:0001135;8.45e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0002385;3.05e-12;31!UBERON:0001015;3.05e-12;31!UBERON:0000383;3.05e-12;31!UBERON:0002384;5.44e-12;198!UBERON:0002199;8.59e-11;46!UBERON:0002416;8.59e-11;46!UBERON:0002097;7.75e-10;41!UBERON:0001013;8.07e-10;14!UBERON:0002204;4.46e-09;70!UBERON:0003102;6.04e-09;50!UBERON:0001134;3.12e-07;16!UBERON:0002036;3.12e-07;16!UBERON:0004237;4.39e-07;10!UBERON:0004695;4.39e-07;10!UBERON:0002111;4.39e-07;10!UBERON:0004178;4.39e-07;10!UBERON:0001135;8.45e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.84e-17,73;UBERON:0002329,3.44e-17,71;UBERON:0003059,3.44e-17,71;UBERON:0007282,3.44e-17,71;UBERON:0004290,3.44e-17,71;UBERON:0009618,3.44e-17,71;UBERON:0003077,9.88e-17,72;UBERON:0007285,9.88e-17,72;UBERON:0002199,1.71e-16,46;UBERON:0002416,1.71e-16,46;UBERON:0002384,1.72e-16,371;UBERON:0003102,6.25e-15,99;UBERON:0007503,2.92e-14,78;UBERON:0000486,3.75e-14,83;UBERON:0001134,8.94e-14,62;UBERON:0002036,8.94e-14,62;UBERON:0003082,8.94e-14,62;UBERON:0002097,5.96e-13,41;UBERON:0002385,6.06e-13,64;UBERON:0001015,6.06e-13,64;UBERON:0000383,6.06e-13,64;UBERON:0005256,1.95e-11,122;UBERON:0003104,3.25e-11,160;UBERON:0009142,3.25e-11,160;UBERON:0001013,8.46e-10,14;UBERON:0000926,3.46e-07,315;UBERON:0004120,3.46e-07,315;UBERON:0006603,3.46e-07,315;UBERON:0004237,3.76e-07,10;UBERON:0004695,3.76e-07,10;UBERON:0002111,3.76e-07,10;UBERON:0004178,3.76e-07,10;UBERON:0001135,5.98e-07,15 | |||
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| ||
|short_description=p5@COL6A3 | |short_description=p5@COL6A3 | ||
}} | }} |
Revision as of 04:31, 18 November 2012
Short description: | p5@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | 0bp_to_ENST00000493608_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.41e-33 | 76 |
multi fate stem cell | 3.51e-23 | 427 |
somatic stem cell | 3.75e-22 | 433 |
stem cell | 7.83e-21 | 441 |
connective tissue cell | 1.17e-15 | 361 |
skin fibroblast | 1.21e-15 | 23 |
muscle precursor cell | 5.14e-13 | 58 |
myoblast | 5.14e-13 | 58 |
multi-potent skeletal muscle stem cell | 5.14e-13 | 58 |
mesenchymal cell | 8.50e-13 | 354 |
muscle cell | 1.84e-12 | 55 |
electrically responsive cell | 3.78e-10 | 61 |
electrically active cell | 3.78e-10 | 61 |
motile cell | 6.64e-10 | 386 |
stromal cell | 1.82e-09 | 28 |
mesenchymal stem cell of adipose | 2.39e-08 | 8 |
smooth muscle cell | 8.77e-08 | 43 |
smooth muscle myoblast | 8.77e-08 | 43 |
preadipocyte | 9.52e-08 | 12 |
extracellular matrix secreting cell | 9.72e-08 | 15 |
aortic smooth muscle cell | 3.76e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.84e-17 | 73 |
somite | 3.44e-17 | 71 |
presomitic mesoderm | 3.44e-17 | 71 |
presumptive segmental plate | 3.44e-17 | 71 |
dermomyotome | 3.44e-17 | 71 |
trunk paraxial mesoderm | 3.44e-17 | 71 |
paraxial mesoderm | 9.88e-17 | 72 |
presumptive paraxial mesoderm | 9.88e-17 | 72 |
integument | 1.71e-16 | 46 |
integumental system | 1.71e-16 | 46 |
connective tissue | 1.72e-16 | 371 |
surface structure | 6.25e-15 | 99 |
epithelial vesicle | 2.92e-14 | 78 |
multilaminar epithelium | 3.75e-14 | 83 |
skeletal muscle tissue | 8.94e-14 | 62 |
striated muscle tissue | 8.94e-14 | 62 |
myotome | 8.94e-14 | 62 |
skin of body | 5.96e-13 | 41 |
muscle tissue | 6.06e-13 | 64 |
musculature | 6.06e-13 | 64 |
musculature of body | 6.06e-13 | 64 |
trunk mesenchyme | 1.95e-11 | 122 |
mesenchyme | 3.25e-11 | 160 |
entire embryonic mesenchyme | 3.25e-11 | 160 |
adipose tissue | 8.46e-10 | 14 |
mesoderm | 3.46e-07 | 315 |
mesoderm-derived structure | 3.46e-07 | 315 |
presumptive mesoderm | 3.46e-07 | 315 |
blood vessel smooth muscle | 3.76e-07 | 10 |
arterial system smooth muscle | 3.76e-07 | 10 |
artery smooth muscle tissue | 3.76e-07 | 10 |
aorta smooth muscle tissue | 3.76e-07 | 10 |
smooth muscle tissue | 5.98e-07 | 15 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.