Coexpression cluster:C13: Difference between revisions
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|pathway_enrichment=0.0018405173547374;0.0173887684410265;3;49;Lysine degradation (KEGG):00310!0.00220738681258641;0.0202503746719884;6;268;MAPK signaling pathway (KEGG):04010!4.75696612601041e-06;0.000143388550369742;8;189;Chemokine signaling pathway (KEGG):04062!0.000544972812093181;0.00627214163736333;6;204;Endocytosis (KEGG):04144!0.000129151376253141;0.00199397124800582;6;156;Phagosome (KEGG):04145!0.000477873723519282;0.00570743522618312;5;130;Axon guidance (KEGG):04360!0.000555448880078327;0.00627855609088538;4;76;VEGF signaling pathway (KEGG):04370!0.00379144781430769;0.0311686554085295;4;128;Osteoclast differentiation (KEGG):04380!6.38563537105438e-05;0.00112280755274373;7;200;Focal adhesion (KEGG):04510!0.00470126286392068;0.0381525563187409;4;136;Cell adhesion molecules (CAMs) (KEGG):04514!0.000476640489844645;0.00570743522618312;4;73;Adherens junction (KEGG):04520!2.50238958708191e-06;0.000113143757758775;6;78;Antigen processing and presentation (KEGG):04612!0.00313298878550628;0.0268445654528105;3;59;NOD-like receptor signaling pathway (KEGG):04621!4.24213640246652e-07;2.44115667523755e-05;8;137;Natural killer cell mediated cytotoxicity (KEGG):04650!0.000202935328796993;0.00298739681694179;5;108;T cell receptor signaling pathway (KEGG):04660!0.000528223360008896;0.00619195160899317;4;75;B cell receptor signaling pathway (KEGG):04662!4.60074460211976e-05;0.000832077523754802;5;79;Fc epsilon RI signaling pathway (KEGG):04664!2.45504413162327e-08;2.2200613361679e-06;8;95;Fc gamma R-mediated phagocytosis (KEGG):04666!2.6027562062418e-05;0.000531466025339051;6;117;Leukocyte transendothelial migration (KEGG):04670!0.00368687673083986;0.0307078022450215;4;127;Neurotrophin signaling pathway (KEGG):04722!1.17977344757862e-05;0.000276591330487875;8;214;Regulation of actin cytoskeleton (KEGG):04810!0.000363495604710622;0.00479359828712133;4;68;Epithelial cell signaling in Helicobacter pylori infection (KEGG):05120!0.00360581559816889;0.0304330836485454;3;62;Shigellosis (KEGG):05131!0.00570081622960004;0.0434773093173111;3;73;Leishmaniasis (KEGG):05140!8.54068010170417e-06;0.000225260437682447;5;56;Staphylococcus aureus infection (KEGG):05150!3.59938972250457e-06;0.000130303329693828;8;182;Tuberculosis (KEGG):05152!0.000248504129258276;0.00357507076864747;6;176;Influenza A (KEGG):05164!3.78884120324693e-05;0.000726768630804638;9;327;Pathways in cancer (KEGG):05200!0.00507154967491869;0.0396332215336238;3;70;Renal cell carcinoma (KEGG):05211!0.00100604412657952;0.0106137655354139;4;89;Prostate cancer (KEGG):05215!0.000452243654198215;0.00561314182563667;4;72;Viral myocarditis (KEGG):05416!0.000384395796239585;0.00486645078039314;4;69;IL-5 Signaling Pathway (Wikipathways):WP127!1.83855981047397e-06;8.95237200023094e-05;7;116;Androgen Receptor Signaling Pathway (Wikipathways):WP138!0.000669270369221152;0.00743242357398227;5;140;Regulation of toll-like receptor signaling pathway (Wikipathways):WP1449!0.00163153868388462;0.0158886767215225;3;47;Energy Metabolism (Wikipathways):WP1541!1.12506608720223e-05;0.000273910320461158;6;101;Integrin-mediated cell adhesion (Wikipathways):WP185!0.00134706607943366;0.0137531101335727;3;44;IL-7 Signaling Pathway (Wikipathways):WP205!0.00622640640872304;0.046368414784961;2;24;IL-9 Signaling Pathway (Wikipathways):WP22!8.05516149998604e-09;1.01978344589823e-06;10;161;B Cell Receptor Signaling Pathway (Wikipathways):WP23!0.000353729092570809;0.00476405352334728;6;188;TNF-alpha/NF-kB Signaling Pathway (Wikipathways):WP231!5.04956713370177e-06;0.000145289817983328;7;135;Adipogenesis (Wikipathways):WP236!0.00548612407591146;0.0423502017079507;3;72;Peptide GPCRs (Wikipathways):WP24!0.00487160358359413;0.0385465633551886;3;69;Alpha6-Beta4 Integrin Signaling Pathway (Wikipathways):WP244!4.3026432980935e-08;3.02619245299243e-06;8;102;IL-3 Signaling Pathway (Wikipathways):WP286!0.000384395796239585;0.00486645078039314;4;69;Kit Receptor Signaling Pathway (Wikipathways):WP304!4.31933965208029e-05;0.000804159411696125;7;188;Focal Adhesion (Wikipathways):WP306!2.08795739019065e-05;0.000440559009330226;4;33;Signaling of Hepatocyte Growth Factor Receptor (Wikipathways):WP313!3.40102496999233e-08;2.69106100750643e-06;8;99;IL-6 Signaling Pathway (Wikipathways):WP364!0.00128626211862013;0.0133476052637138;5;162;MAPK signaling pathway (Wikipathways):WP382!1.65159599828503e-05;0.00036050354031532;5;64;IL-4 signaling Pathway (Wikipathways):WP395!0.0018405173547374;0.0173887684410265;3;49;Diurnally regulated genes with circadian orthologs (Wikipathways):WP410!3.18211748645181e-06;0.000126155147371127;8;179;EGFR1 Signaling Pathway (Wikipathways):WP437!0.000158684934282218;0.00239160865239628;6;162;Insulin Signaling (Wikipathways):WP481!4.57915386150178e-09;7.24651098582656e-07;8;77;IL-2 Signaling Pathway (Wikipathways):WP49!8.08190344501322e-06;0.000222428038291016;7;145;Regulation of Actin Cytoskeleton (Wikipathways):WP51!0.000282192468742205;0.00396950739364035;3;26;EPO Receptor Signaling (Wikipathways):WP581!1.06496489622608e-05;0.000269649111724443;4;28;Interferon type I (Wikipathways):WP585!1.27731658450251e-13;4.04270698995043e-11;13;133;T Cell Receptor Signaling Pathway (Wikipathways):WP69!0.000810294146516502;0.0088433826680163;4;84;DNA damage response (only ATM dependent) (Wikipathways):WP710!8.90315433193457e-16;5.63569669211458e-13;23;511;Signaling in Immune system (Reactome):REACT_6900!0.000128448803996245;0.00199397124800582;4;52;Signaling by EGFR (Reactome):REACT_9417!0.00481489011429591;0.0385465633551886;5;220;Signalling by NGF (Reactome):REACT_11061!3.705307953379e-06;0.000130303329693828;12;466;Hemostasis (Reactome):REACT_604!0.00138489869458035;0.0139149345026883;4;97;Cell junction organization (Reactome):REACT_20676!0.00208674702189166;0.0194251597773151;6;265;Axon guidance (Reactome):REACT_18266!3.18875569974414e-06;0.000126155147371127;5;46;Interactions of the immunoglobulin superfamily (IgSF) member proteins (Reactome):REACT_23853!0.0014383578317433;0.014226257929586;4;98;EGFR1 down reg. targets (Netpath):NetPath_4!2.26356649343929e-08;2.2200613361679e-06;19;816;TGF beta receptor up reg. targets (Netpath):NetPath_7!4.15328696291227e-06;0.000131451532376173;15;740;TGF beta receptor down reg. targets (Netpath):NetPath_7!6.88721406633646e-05;0.00117827202810567;13;728;TNF alpha/NF-kB up reg. targets (Netpath):NetPath_9!0.006145163808536;0.0463081987000391;3;75;Kit Receptor up reg. targets (Netpath):NetPath_6!3.2429120465427e-07;2.05276332546153e-05;9;182;B Cell Receptor down reg. targets (Netpath):NetPath_12!1.0834361410196e-06;5.71512564387841e-05;8;155;IL-1 up reg. targets (Netpath):NetPath_13!0.000314063200171219;0.0043217827327909;9;433;IL-2 up reg. targets (Netpath):NetPath_14!2.60123119844324e-10;5.48859782871524e-08;14;295;IL-2 down reg. targets (Netpath):NetPath_14!0.000106343822457922;0.00177146420041749;7;217;IL-4 up reg. targets (Netpath):NetPath_16!4.13810866964249e-06;0.000131451532376173;7;131;IL-5 up reg. targets (Netpath):NetPath_17!0.00674604731973775;0.0490833098091264;2;25;IL-9 up reg. targets (Netpath):NetPath_20!1.39908131026856e-05;0.000316292310499999;9;288;{ACTB,297} (Static Module):NA!0.00674604731973775;0.0490833098091264;2;25;{BCLAF1,25} (Static Module):NA!3.5829366915091e-05;0.000708749664289145;10;406;{GRB2,414} (Static Module):NA!0.00313822724092887;0.0268445654528105;2;17;{HCLS1,17} (Static Module):NA!0.000119022266074925;0.00193182293398532;4;51;{HLA-A,53} (Static Module):NA!0.00274682664308726;0.0244893135925948;4;117;{MAPK14,123} (Static Module):NA!0.00313822724092887;0.0268445654528105;2;17;{RARA,17} (Static Module):NA!0.000924157004303776;0.00991510819871679;4;87;{SP1,88} (Static Module):NA!0.00256491107916644;0.0231941244730337;3;55;{TRAF6,55} (Static Module):NA | |pathway_enrichment=0.0018405173547374;0.0173887684410265;3;49;Lysine degradation (KEGG):00310!0.00220738681258641;0.0202503746719884;6;268;MAPK signaling pathway (KEGG):04010!4.75696612601041e-06;0.000143388550369742;8;189;Chemokine signaling pathway (KEGG):04062!0.000544972812093181;0.00627214163736333;6;204;Endocytosis (KEGG):04144!0.000129151376253141;0.00199397124800582;6;156;Phagosome (KEGG):04145!0.000477873723519282;0.00570743522618312;5;130;Axon guidance (KEGG):04360!0.000555448880078327;0.00627855609088538;4;76;VEGF signaling pathway (KEGG):04370!0.00379144781430769;0.0311686554085295;4;128;Osteoclast differentiation (KEGG):04380!6.38563537105438e-05;0.00112280755274373;7;200;Focal adhesion (KEGG):04510!0.00470126286392068;0.0381525563187409;4;136;Cell adhesion molecules (CAMs) (KEGG):04514!0.000476640489844645;0.00570743522618312;4;73;Adherens junction (KEGG):04520!2.50238958708191e-06;0.000113143757758775;6;78;Antigen processing and presentation (KEGG):04612!0.00313298878550628;0.0268445654528105;3;59;NOD-like receptor signaling pathway (KEGG):04621!4.24213640246652e-07;2.44115667523755e-05;8;137;Natural killer cell mediated cytotoxicity (KEGG):04650!0.000202935328796993;0.00298739681694179;5;108;T cell receptor signaling pathway (KEGG):04660!0.000528223360008896;0.00619195160899317;4;75;B cell receptor signaling pathway (KEGG):04662!4.60074460211976e-05;0.000832077523754802;5;79;Fc epsilon RI signaling pathway (KEGG):04664!2.45504413162327e-08;2.2200613361679e-06;8;95;Fc gamma R-mediated phagocytosis (KEGG):04666!2.6027562062418e-05;0.000531466025339051;6;117;Leukocyte transendothelial migration (KEGG):04670!0.00368687673083986;0.0307078022450215;4;127;Neurotrophin signaling pathway (KEGG):04722!1.17977344757862e-05;0.000276591330487875;8;214;Regulation of actin cytoskeleton (KEGG):04810!0.000363495604710622;0.00479359828712133;4;68;Epithelial cell signaling in Helicobacter pylori infection (KEGG):05120!0.00360581559816889;0.0304330836485454;3;62;Shigellosis (KEGG):05131!0.00570081622960004;0.0434773093173111;3;73;Leishmaniasis (KEGG):05140!8.54068010170417e-06;0.000225260437682447;5;56;Staphylococcus aureus infection (KEGG):05150!3.59938972250457e-06;0.000130303329693828;8;182;Tuberculosis (KEGG):05152!0.000248504129258276;0.00357507076864747;6;176;Influenza A (KEGG):05164!3.78884120324693e-05;0.000726768630804638;9;327;Pathways in cancer (KEGG):05200!0.00507154967491869;0.0396332215336238;3;70;Renal cell carcinoma (KEGG):05211!0.00100604412657952;0.0106137655354139;4;89;Prostate cancer (KEGG):05215!0.000452243654198215;0.00561314182563667;4;72;Viral myocarditis (KEGG):05416!0.000384395796239585;0.00486645078039314;4;69;IL-5 Signaling Pathway (Wikipathways):WP127!1.83855981047397e-06;8.95237200023094e-05;7;116;Androgen Receptor Signaling Pathway (Wikipathways):WP138!0.000669270369221152;0.00743242357398227;5;140;Regulation of toll-like receptor signaling pathway (Wikipathways):WP1449!0.00163153868388462;0.0158886767215225;3;47;Energy Metabolism (Wikipathways):WP1541!1.12506608720223e-05;0.000273910320461158;6;101;Integrin-mediated cell adhesion (Wikipathways):WP185!0.00134706607943366;0.0137531101335727;3;44;IL-7 Signaling Pathway (Wikipathways):WP205!0.00622640640872304;0.046368414784961;2;24;IL-9 Signaling Pathway (Wikipathways):WP22!8.05516149998604e-09;1.01978344589823e-06;10;161;B Cell Receptor Signaling Pathway (Wikipathways):WP23!0.000353729092570809;0.00476405352334728;6;188;TNF-alpha/NF-kB Signaling Pathway (Wikipathways):WP231!5.04956713370177e-06;0.000145289817983328;7;135;Adipogenesis (Wikipathways):WP236!0.00548612407591146;0.0423502017079507;3;72;Peptide GPCRs (Wikipathways):WP24!0.00487160358359413;0.0385465633551886;3;69;Alpha6-Beta4 Integrin Signaling Pathway (Wikipathways):WP244!4.3026432980935e-08;3.02619245299243e-06;8;102;IL-3 Signaling Pathway (Wikipathways):WP286!0.000384395796239585;0.00486645078039314;4;69;Kit Receptor Signaling Pathway (Wikipathways):WP304!4.31933965208029e-05;0.000804159411696125;7;188;Focal Adhesion (Wikipathways):WP306!2.08795739019065e-05;0.000440559009330226;4;33;Signaling of Hepatocyte Growth Factor Receptor (Wikipathways):WP313!3.40102496999233e-08;2.69106100750643e-06;8;99;IL-6 Signaling Pathway (Wikipathways):WP364!0.00128626211862013;0.0133476052637138;5;162;MAPK signaling pathway (Wikipathways):WP382!1.65159599828503e-05;0.00036050354031532;5;64;IL-4 signaling Pathway (Wikipathways):WP395!0.0018405173547374;0.0173887684410265;3;49;Diurnally regulated genes with circadian orthologs (Wikipathways):WP410!3.18211748645181e-06;0.000126155147371127;8;179;EGFR1 Signaling Pathway (Wikipathways):WP437!0.000158684934282218;0.00239160865239628;6;162;Insulin Signaling (Wikipathways):WP481!4.57915386150178e-09;7.24651098582656e-07;8;77;IL-2 Signaling Pathway (Wikipathways):WP49!8.08190344501322e-06;0.000222428038291016;7;145;Regulation of Actin Cytoskeleton (Wikipathways):WP51!0.000282192468742205;0.00396950739364035;3;26;EPO Receptor Signaling (Wikipathways):WP581!1.06496489622608e-05;0.000269649111724443;4;28;Interferon type I (Wikipathways):WP585!1.27731658450251e-13;4.04270698995043e-11;13;133;T Cell Receptor Signaling Pathway (Wikipathways):WP69!0.000810294146516502;0.0088433826680163;4;84;DNA damage response (only ATM dependent) (Wikipathways):WP710!8.90315433193457e-16;5.63569669211458e-13;23;511;Signaling in Immune system (Reactome):REACT_6900!0.000128448803996245;0.00199397124800582;4;52;Signaling by EGFR (Reactome):REACT_9417!0.00481489011429591;0.0385465633551886;5;220;Signalling by NGF (Reactome):REACT_11061!3.705307953379e-06;0.000130303329693828;12;466;Hemostasis (Reactome):REACT_604!0.00138489869458035;0.0139149345026883;4;97;Cell junction organization (Reactome):REACT_20676!0.00208674702189166;0.0194251597773151;6;265;Axon guidance (Reactome):REACT_18266!3.18875569974414e-06;0.000126155147371127;5;46;Interactions of the immunoglobulin superfamily (IgSF) member proteins (Reactome):REACT_23853!0.0014383578317433;0.014226257929586;4;98;EGFR1 down reg. targets (Netpath):NetPath_4!2.26356649343929e-08;2.2200613361679e-06;19;816;TGF beta receptor up reg. targets (Netpath):NetPath_7!4.15328696291227e-06;0.000131451532376173;15;740;TGF beta receptor down reg. targets (Netpath):NetPath_7!6.88721406633646e-05;0.00117827202810567;13;728;TNF alpha/NF-kB up reg. targets (Netpath):NetPath_9!0.006145163808536;0.0463081987000391;3;75;Kit Receptor up reg. targets (Netpath):NetPath_6!3.2429120465427e-07;2.05276332546153e-05;9;182;B Cell Receptor down reg. targets (Netpath):NetPath_12!1.0834361410196e-06;5.71512564387841e-05;8;155;IL-1 up reg. targets (Netpath):NetPath_13!0.000314063200171219;0.0043217827327909;9;433;IL-2 up reg. targets (Netpath):NetPath_14!2.60123119844324e-10;5.48859782871524e-08;14;295;IL-2 down reg. targets (Netpath):NetPath_14!0.000106343822457922;0.00177146420041749;7;217;IL-4 up reg. targets (Netpath):NetPath_16!4.13810866964249e-06;0.000131451532376173;7;131;IL-5 up reg. targets (Netpath):NetPath_17!0.00674604731973775;0.0490833098091264;2;25;IL-9 up reg. targets (Netpath):NetPath_20!1.39908131026856e-05;0.000316292310499999;9;288;{ACTB,297} (Static Module):NA!0.00674604731973775;0.0490833098091264;2;25;{BCLAF1,25} (Static Module):NA!3.5829366915091e-05;0.000708749664289145;10;406;{GRB2,414} (Static Module):NA!0.00313822724092887;0.0268445654528105;2;17;{HCLS1,17} (Static Module):NA!0.000119022266074925;0.00193182293398532;4;51;{HLA-A,53} (Static Module):NA!0.00274682664308726;0.0244893135925948;4;117;{MAPK14,123} (Static Module):NA!0.00313822724092887;0.0268445654528105;2;17;{RARA,17} (Static Module):NA!0.000924157004303776;0.00991510819871679;4;87;{SP1,88} (Static Module):NA!0.00256491107916644;0.0231941244730337;3;55;{TRAF6,55} (Static Module):NA | ||
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202559,0.0314579,0.231827,1,1,0.0331675,0.182197,0.758709,0.0262396,0.000447156,0.0642813,0.319946,0.0832639,0.000145661,0.60373,0.595666,0.241986,0.171096,0.833062,0.0432114,0.999115,0.51382,0.00345266,0.17535,0.961308,1,0.00456365,1,0.767133,0.87523,0.50389,0.784484,6.12871e-07,0.981903,0.583864,0.999354,0.741998,1,0.973102,0.068592,0.967468,0.0229081,0.0149861,0.43924,0.00122391,0.00366814,0.0047399,0.394969,0.0752025,1,0.125271,0.000607382,0.00146419,0.714945,1,0.466745,0.0330947,0.00530675,0.899982,0.0110743,1,0.173142,0.0422299,0.00194258,0.999998,0.661607,0.365135,0.0396665,0.981791,0.0192827,1,1,0.7562,0.106306,0.148674,0.205655,0.251983,0.118518,0.000262592,0.729266,0.991852,0.212716,1,0.853804,0.0396471,0.621742,0.454573,0.829036,0.0147473,1,0.16207,0.625742,0.999999,9.26701e-06,6.94611e-05,0.999152,0.697804,0.0932779,0.774676,0.131738,0.0639453,0.702131,1,1,1,0.347727,0.135967,0.225412,0.55227,0.890269,0.406365,0.239946,0.000253226,0.106885,0.407904,0.59566,0.622989,3.52762e-12,0.00157628,0.00879052,0.99459,0.0283396,1.36497e-06,0.977832,0.916612,0.0537254,0.0627343,0.341766,0.0384954,0.0664351,1,0.986267,0.607118,0.999999,0.950501,0.999991,5.69616e-07,3.93742e-06,0.0859196,1.93193e-05,0.00450758,0.775568,1,0.106408,0.878354,0.20325,0.685969,0.0475888,0.000483881,0.940606,0.0296533,0.845877,0.843715,0.491597,0.379112,0.17779,0.813306,0.450055,1,0.258852,0.0279507,0.0827078,0.0125749,0.513365,0.756731,0.000114072,3.85727e-08,2.77889e-05,0.000367744,0.997701,0.0079974,0.000221436,0.105694,0.0323162,0.140716,0.0821812,1,0.0550365,0.999928,0.629924,0.652896,0.707637,1,0.105891,0.974055,0.997841,0.469134,0.995227,1,1,0.00344267,1,0.0182636,0.832649,0.571502,1,1,6.68042e-09,0.187939,8.9103e-12,0.975779,0.142677,9.05099e-06,0.175543,0.00560105,0.0146643,0.215881,0.178379,0.926119,0.12584,0.999999,0.963867,0.45225,1,0.109241,0.963454,0.992247,0.967645,0.419946,1,1,0.000142197,0.842289,1,0.00121524,4.1519e-11,0.999996,0.999602,0.999999,2.98954e-05,0.0112205,0.623626,0.784864,0.994461,0.687984,0.0724813,0.968085,0.958127,0.0196221,2.51414e-06,1,0.316046,1,1,0.471912,1,0.999991,0.657292,1,0.227214,1,0.99682,1,1,1,0.875309,0.542807,0.0897681,0.0185154,0.911701,0.998622,0.711702,0.959881,5.57237e-05,0.055068,1,0.295364,0.998111,0.997983,0.0021044,0.853139,9.42744e-07,0.140751,0.999978,0.625423,0.0483058,0.950888,1,0.883549,3.56274e-06,0.351673,0.0116569,0.995403,0.0266364,0.999999,0.00171693,0.793643,1,0.999993,0.342358,0.0143988,0.0831256,0.998897,1,0.998913,0.627678,0.00134484,7.36938e-07,1,0.264872,1.06348e-05,0.00015478,0.0055558,0.870076,0.0131863,0.0454247,0.116173,0.43323,0.654009,0.0682969,0.143738,0.823608,0.999193,0.753615,0.999516,0.983132,0.363832,0.00416437,0.0445583,0.00116221,1,0.57479,3.29052e-06,0.938652,7.53313e-05,0.00141429,0.939902,0.83268,0.999998,0.0246419,0.900011,0.817226,0.328879,0.0443103,0.961266,0.0568279,0.182837,3.62117e-12,0.999978,0.000116808,0.0435794,0.000135154,0.999951,0.0416121,1.4334e-05,4.26543e-13,0.267593,0.186261,7.46192e-11,0.117855,0.00198638,1.62261e-08,0.619827,1,0.386921,0.000154044,0.961184,0.0210609,0.980129,0.0729404,2.32015e-08,0.000502163,1.22735e-09,0.000769169,0.995251,0.00467804,0.00235085,6.34449e-14,0.492296,0.000133424,9.63416e-07,0.0573009,0.0292022,3.87032e-07,0.39287,0.100687,0.816581,6.83916e-05,8.19545e-05,0.0320893,0.040674,8.78783e-08,0.0179861,0.0605522,0.000107364,0.0154782,0.32219,0.396828,8.93548e-06,0.239008,0.195038,0.124384,0.161222,0.566014,0.98249,0.99216,0.953326,0.0110898,1.0458e-08,0.141224,0.831959,0.0574855,0.56996,0.0164679,0.707353,0.173015,0.188904,0.00716572,0.99794,0.167372,0.0342696,0.10628,0.122015,0.0035568,0.146935,0.109771,0.264164,0.28172,0.287791,0.901662,0.0252797,0.119959,0.0118788,0.0404967,0.000755223,0.418389,4.10197e-05,0.00159422,0.00114235,0.435709,0.000799873,0.0732647,0.577509,0.149072,0.000684652,0.431733,0.000216056,0.071616,0.0156075,0.0119394,0.131049,0.0528305,0.0202742,0.00121564,0.130816,0.924507,0.0895659,0.697425,0.175091,0.000854224,0.977766,0.511017,9.382e-07,0.0368473,0.191482,0.342285,0.20332,0.00287277,0.409433,1.54485e-05,0.0809095,0.0154779,0.770911,0.00271479,0.314018,0.98799,0.0444531,0.975935,0.000561783,0.15134,0.834168,2.25044e-05,0.0411126,0.0173073,0.0128674,0.885354,0.000604245,0.0924162,0.457633,0.995391,2.64004e-07,9.75547e-05,0.973937,0.588353,0.0549694,6.65403e-07,0.039509,0.00551504,0.149851,0.00187256,0.000865468,0.0157846,0.0424725,0.0148196,0.403425,0.49423,0.00010526,0.00431908,0.0548754,2.49999e-07,0.326133,0.110902,0.000615545,1.04119e-06,0.00446651,0.0425853,2.06573e-06,2.2552e-07,0.996078,0.0833177,0.195082,0.00525826,0.380659,0.00372127,0.311902,5.9775e-08,2.44728e-07,0.0157499,0.00015939,4.93999e-06,0.0221959,0.861935,3.26371e-07,1.93225e-06,0.905047,0.00313848,0.00141543,0.275051,0.118075,0.00341665,0.000231904,0.783701,1.04929e-06,3.49641e-07,0.00120294,0.998503,0.000188197,1.54601e-07,0.0057687,0.0218542,8.91976e-05,0.393353,7.80779e-05,0.162253,1.39688e-06,0.000392875,0.426934,0.00181067,0.0198102,0.00308035,0.000102958 | 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5,0.426934,0.00181067,0.0198102,0.00308035,0.000102958 | ||
|tfbs_overrepresentation_for_novel_motifs=3.33048e-09,2.11695e-11,2.65128e-09,0.476856,0.866512,1.44729,1.98456e-05,0.0650689,0.00154875,0,1.68956e-09,1.35933,1.09764e-06,0.000965251,0.977816,0.0379963,6.93872e-06,0.176904,0.00155354,6.31525e-07,2.94802,3.41373e-05,0.000183084,1.19462,0.00659387,0.00153243,0.129686,0.00301301,2.30092e-05,1.30495e-06,0.00872524,0.200487,7.44393e-06,0.00819242,7.23246e-16,8.7397e-10,0,0.000939803,0.372235,3.16526e-12,1.13047,4.31869e-06,0.417271,0.568165,0,4.52918e-05,1.6628e-06,7.90569e-07,1.76883,0.0308356,0.00477825,1.54837e-06,0.0484701,0.00712866,0.247678,0.000195358,0.961884,0.000166232,0.00224436,3.36308e-07,0.00120012,1.98068e-06,0.404495,0.000150905,0.000156713,3.10885e-05,0.410556,1.06206,0.54334,0.0487156,5.32791e-14,1.11111,0,1.28235,0,2.26834e-12,0.17992,0.00181434,1.15919,0.540794,0.497293,1.90235e-05,1.81104,1.92591,1.9551e-06,0,0.035882,0.000221303,0.0046052,0.54099,0.0668995,0.00162038,3.61146,3.15656,1.3172e-09,1.57581,0.0297236,0.0090682,0.000226757,2.29345e-07,1.10595,0.577321,0.413511,0.95947,0.523289,7.18424e-15,2.13857e-07,0.0795366,3.23504e-06,0,0.00250758,0.400224,0.533259,0.00037953,1.70166,1.18676,0,2.32625e-07,0.00959372,1.88448,0.83812,1.46526,1.06746,0.753772,0.487422,0.764991,0.96389,6.5068e-06,0.755079,0.0522385,3.21002,0.10404,0.390062,0.547749,0.660321,1.70241,0.868596,0.237894,0.021393,2.05013,0.0843758,0.50643,1.09679,0.525162,0.0299496,0.460177,0.590564,0.0787842,1.45696,4.3144e-13,2.55999e-09,0,0.715275,0.000972245,0.19899,0.240621,0.36093,0.199137,1.58251,7.28067e-15,0.102997,0.0679554,0.621925,3.75821e-07,0.562993,2.10856,0.0729759,0.179825,0 | |||
}} | }} |
Revision as of 13:03, 26 November 2012
Full id: C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
No analysis results for this cluster
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data