FFCP PHASE1:Hg19::chr1:7844472..7844494,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8863|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8847|TSSclassifier=S|UniProt=|association_with_transcript=32bp_to_uc009vmg.1_5end|description=CAGE_peak_3_at_PER3_5end|id=chr1:7844472..7844494,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006601;3.28e-08;82!UBERON:0006215;6.73e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!4.44e-34!115;UBERON:0000062!1.11e-12!511;UBERON:0001049!1.76e-11!57;UBERON:0005068!1.76e-11!57;UBERON:0006241!1.76e-11!57;UBERON:0007135!1.76e-11!57;UBERON:0003075!3.41e-11!86;UBERON:0007284!3.41e-11!86;UBERON:0000955!7.44e-11!69;UBERON:0006238!7.44e-11!69;UBERON:0005743!1.71e-10!86;UBERON:0001017!2.26e-10!82;UBERON:0002346!6.64e-10!90;UBERON:0000073!7.08e-10!94;UBERON:0001016!7.08e-10!94;UBERON:0004121!9.98e-10!169;UBERON:0002780!1.64e-09!41;UBERON:0001890!1.64e-09!41;UBERON:0006240!1.64e-09!41;UBERON:0002616!3.39e-09!59;UBERON:0003080!4.91e-09!42;UBERON:0000924!6.21e-09!173;UBERON:0006601!6.21e-09!173;UBERON:0000033!1.84e-08!123;UBERON:0000153!2.12e-08!129;UBERON:0007811!2.12e-08!129;UBERON:0003056!1.44e-07!61|ontology_enrichment_uberon_v019=UBERON:0007023;1.38e-10;114!UBERON:0003296;7.09e-10;4!UBERON:0010133;7.09e-10;4!UBERON:0004175;8.98e-10;21!UBERON:0001894;4.62e-08;7!UBERON:0000995;9.04e-07;17|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.70e-36,114;UBERON:0003296,4.62e-10,4;UBERON:0010133,4.62e-10,4;UBERON:0004175,2.62e-09,25;UBERON:0000073,3.50e-09,53;UBERON:0002616,3.50e-09,53;UBERON:0001049,1.87e-08,56;UBERON:0005068,1.87e-08,56;UBERON:0006241,1.87e-08,56;UBERON:0007135,1.87e-08,56;UBERON:0001894,2.32e-08,7;UBERON:0006222,2.32e-08,7;UBERON:0003075,2.90e-08,82;UBERON:0007284,2.90e-08,82;UBERON:0000955,7.80e-08,68;UBERON:0006238,7.80e-08,68;UBERON:0002780,8.59e-08,41;UBERON:0001890,8.59e-08,41;UBERON:0003080,8.59e-08,41;UBERON:0006240,8.59e-08,41;UBERON:0004121,9.91e-08,171;UBERON:0000924,9.91e-08,171;UBERON:0006601,9.91e-08,171;UBERON:0002346,1.28e-07,86;UBERON:0010371,1.54e-07,104;UBERON:0001017,1.82e-07,81;UBERON:0003133,3.05e-07,48;UBERON:0001016,6.24e-07,89|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0.919421224478927,0,0,0,0,0,0,0,0.217010870715852,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0.211255286311942,0,0.209658645508376,0.112328631146495,0,0,0.855038231223746,0.39783335439818,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0.651083453856419,0,0.150575119077773,0,0,0.236777252044017,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0,0,0.973269740605272,0.0945348171640679,0.221729397462564,0,1.44076983047484,0,0.370784442784429,0,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.132409180813219,0.573673241497627,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,1.07633781413317,0,0.211931901159562,0.900273288253207,0.515262646192195,0.257640540045629,0.930584281657949,1.35021065793013,0.974370051611986,0,0.184099797284599,0.161646056818812,0,0.302256294682921,0.508681776931463,0,0.272746120590835,0.573609190778008,0.243947412259191,0.132529768321485,0.232387885739037,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,6.33775174109154,0,2.36315962672562,0,0.737930631258681,0,0,0,0.201057944823262,0.0925884451585296,0,0,0,0.811512834825538,0.117408694235822,0.144366447761074,0,0,0,0.858486162094873,0,0.468008530278475,0.743155811443641,0,0.671928512795438,0.141775097242386,0.358234090811393,0.581267877027924,0.383382679165211,0,0.088048434013226,0.207328115540772,0.576479813667846,0.12624243342638,0.63497894292169,0,0,0,0,0.300343057843917,1.71495859578347,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0.502257091432126,0,0.239624855491583,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0.473107245101804,0.937131319941706,0,0,0,0,0,0.173767228936166,0,0,0,0,0,1.5156378572313,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0.308419387605311,0,0.246381468041427,0,0,0.846016147141356,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,4.53380451249978,0.824125183365091,1.40266149865,0,0,0,0.290012154876366,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0.141405431953713,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0.354761064070598,0.211107635297664,0.987884678879706,0,0,0.0962221127255121,0,0,5.27205284349963,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8863 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8847 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=32bp_to_uc009vmg.1_5end | |||
|description=CAGE_peak_3_at_PER3_5end | |||
|id=chr1:7844472..7844494,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.28e-08;82!UBERON:0006215;6.73e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.44e-34!115;UBERON:0000062!1.11e-12!511;UBERON:0001049!1.76e-11!57;UBERON:0005068!1.76e-11!57;UBERON:0006241!1.76e-11!57;UBERON:0007135!1.76e-11!57;UBERON:0003075!3.41e-11!86;UBERON:0007284!3.41e-11!86;UBERON:0000955!7.44e-11!69;UBERON:0006238!7.44e-11!69;UBERON:0005743!1.71e-10!86;UBERON:0001017!2.26e-10!82;UBERON:0002346!6.64e-10!90;UBERON:0000073!7.08e-10!94;UBERON:0001016!7.08e-10!94;UBERON:0004121!9.98e-10!169;UBERON:0002780!1.64e-09!41;UBERON:0001890!1.64e-09!41;UBERON:0006240!1.64e-09!41;UBERON:0002616!3.39e-09!59;UBERON:0003080!4.91e-09!42;UBERON:0000924!6.21e-09!173;UBERON:0006601!6.21e-09!173;UBERON:0000033!1.84e-08!123;UBERON:0000153!2.12e-08!129;UBERON:0007811!2.12e-08!129;UBERON:0003056!1.44e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.38e-10;114!UBERON:0003296;7.09e-10;4!UBERON:0010133;7.09e-10;4!UBERON:0004175;8.98e-10;21!UBERON:0001894;4.62e-08;7!UBERON:0000995;9.04e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.70e-36,114;UBERON:0003296,4.62e-10,4;UBERON:0010133,4.62e-10,4;UBERON:0004175,2.62e-09,25;UBERON:0000073,3.50e-09,53;UBERON:0002616,3.50e-09,53;UBERON:0001049,1.87e-08,56;UBERON:0005068,1.87e-08,56;UBERON:0006241,1.87e-08,56;UBERON:0007135,1.87e-08,56;UBERON:0001894,2.32e-08,7;UBERON:0006222,2.32e-08,7;UBERON:0003075,2.90e-08,82;UBERON:0007284,2.90e-08,82;UBERON:0000955,7.80e-08,68;UBERON:0006238,7.80e-08,68;UBERON:0002780,8.59e-08,41;UBERON:0001890,8.59e-08,41;UBERON:0003080,8.59e-08,41;UBERON:0006240,8.59e-08,41;UBERON:0004121,9.91e-08,171;UBERON:0000924,9.91e-08,171;UBERON:0006601,9.91e-08,171;UBERON:0002346,1.28e-07,86;UBERON:0010371,1.54e-07,104;UBERON:0001017,1.82e-07,81;UBERON:0003133,3.05e-07,48;UBERON:0001016,6.24e-07,89 | |||
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| |||
|short_description=p3@PER3 | |||
}} |
Revision as of 06:48, 12 September 2013
Short description: | p3@PER3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PER3_5end |
Coexpression cluster: | NA |
Association with transcript: | 32bp_to_uc009vmg.1_5end |
EntrezGene: | PER3 |
HGNC: | 8847 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.70e-36 | 114 |
gland of diencephalon | 4.62e-10 | 4 |
neuroendocrine gland | 4.62e-10 | 4 |
internal genitalia | 2.62e-09 | 25 |
regional part of nervous system | 3.50e-09 | 53 |
regional part of brain | 3.50e-09 | 53 |
neural tube | 1.87e-08 | 56 |
neural rod | 1.87e-08 | 56 |
future spinal cord | 1.87e-08 | 56 |
neural keel | 1.87e-08 | 56 |
diencephalon | 2.32e-08 | 7 |
future diencephalon | 2.32e-08 | 7 |
neural plate | 2.90e-08 | 82 |
presumptive neural plate | 2.90e-08 | 82 |
brain | 7.80e-08 | 68 |
future brain | 7.80e-08 | 68 |
regional part of forebrain | 8.59e-08 | 41 |
forebrain | 8.59e-08 | 41 |
anterior neural tube | 8.59e-08 | 41 |
future forebrain | 8.59e-08 | 41 |
ectoderm-derived structure | 9.91e-08 | 171 |
ectoderm | 9.91e-08 | 171 |
presumptive ectoderm | 9.91e-08 | 171 |
neurectoderm | 1.28e-07 | 86 |
ecto-epithelium | 1.54e-07 | 104 |
central nervous system | 1.82e-07 | 81 |
reproductive organ | 3.05e-07 | 48 |
nervous system | 6.24e-07 | 89 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.