FFCP PHASE1:Hg19::chr3:196295437..196295466,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=348793|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28786|TSSclassifier=S|UniProt=C9JJZ8|association_with_transcript=0bp_to_ENST00000429115_5end|coexpression_cluster_id=C1|description=CAGE_peak_3_at_WDR53_5end|id=chr3:196295437..196295466,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002262;1.21e-13;2!CL:1000398;1.21e-13;2!CL:0002575;1.21e-13;2!CL:0002567;1.53e-09;3!CL:0000669;1.80e-07;4|ontology_enrichment_celltype_v019_2=CL:0002262,9.40e-14,2;CL:1000398,9.40e-14,2;CL:0002575,1.55e-13,2;CL:0002567,1.54e-09,3;CL:0000669,2.04e-07,4|ontology_enrichment_development_v019=UBERON:0009117;4.89e-11;10!UBERON:0005564;4.89e-11;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001893!5.98e-09!34;UBERON:0002020!8.93e-09!34;UBERON:0003528!8.93e-09!34;UBERON:0002791!1.15e-08!33;UBERON:0001049!2.18e-08!57;UBERON:0005068!2.18e-08!57;UBERON:0006241!2.18e-08!57;UBERON:0007135!2.18e-08!57;UBERON:0001869!7.94e-08!32;UBERON:0003075!1.40e-07!86;UBERON:0007284!1.40e-07!86;UBERON:0002780!2.49e-07!41;UBERON:0001890!2.49e-07!41;UBERON:0006240!2.49e-07!41;UBERON:0000956!3.54e-07!25;UBERON:0000203!3.54e-07!25;UBERON:0003080!6.05e-07!42|ontology_enrichment_uberon_v019=UBERON:0001281;1.21e-13;2!UBERON:0003497;1.21e-13;2!UBERON:0003909;1.21e-13;2!UBERON:0003835;1.21e-13;2!UBERON:0000473;1.51e-13;8!UBERON:0000991;2.18e-11;21!UBERON:0003135;4.03e-10;11!UBERON:0001280;1.53e-09;3!UBERON:0004647;1.53e-09;3!UBERON:0002119;1.80e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001281,9.40e-14,2;UBERON:0003497,9.40e-14,2;UBERON:0003909,9.40e-14,2;UBERON:0003835,9.40e-14,2;UBERON:0000473,1.51e-13,8;UBERON:0000991,2.11e-11,21;UBERON:0009196,2.11e-11,21;UBERON:0009117,2.11e-11,21;UBERON:0005564,2.11e-11,21;UBERON:0004176,6.47e-11,22;UBERON:0003135,4.03e-10,11;UBERON:0001280,1.30e-09,3;UBERON:0004647,1.30e-09,3;UBERON:0005171,1.30e-09,3;UBERON:0002119,1.69e-07,4|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0.697801167972428,0,0.263766978228454,0.123766352960047,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0.572471974262113,0.273748850145768,0.376627918784408,0.0764134057479513,0.328402357799783,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0.212604299965044,0,0.22465726229299,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0,0,0.32592226663359,0,0,0.222820913770347,0.589211814949674,0,0,0.25618263945135,0,0,0.276350017785848,0,0.296573126324121,0,0,0.226618685395132,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0.486634870302636,0,0,0.263504357079378,3.40545596294053,0,0,0,0,0,0.238490624305342,0,0,0.39752481473341,0,0.347140501607594,0,0.419499436209906,0,0,0,0,0.33472061276467,0,0,0,0,0,0.357198913136319,0,0,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0.560677600142307,0,0.24666754841716,0.311211035399766,0,0.163461903113459,0,0,0,0,0,0,0.23486899728753,0.323745888736263,0.140450806702248,0,0,0,0,0,0,0,0.168336113954066,0,0,0.438977620880838,0,0,0.113432183160021,0.179389635688862,0.213557388818567,0.211931901159562,0,0.103052529238439,0,0.18611685633159,0.506328996723799,0.0974370051611986,0.504867548488229,0.0920498986422993,0,0,0.201504196455281,0.508681776931463,0,0,0.286804595389004,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0.653638332277218,0.237270619111097,0,0.196221465125346,0,0,1.40241773803446,0,0,0,0,0,0,0,0.343135620597051,0.219500570817251,0,0,0.185176890317059,0,0,0,0.115930404975077,0,0.144366447761074,0,0,0,0,0.492434012174795,0,0.148631162288728,0,0,0.425325291727159,0.0895585227028483,0,0,0.492663237895943,0.352193736052904,0,0.432359860250884,0.12624243342638,0.126995788584338,0,1.17217447210047,0,0.308482478109971,0.600686115687835,0,0,0.43596006883328,0.22001485746285,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.142977993658148,0,0.823240336780769,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0,0,0.112085143993527,0.197030760201927,0.215627574859517,0.256686072559497,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0.157702415033935,0,0,0,0,0.664225598535437,0,0.260650843404249,0,1.02943027143257,0,0.215714200818617,0.106727557803444,0,0,0,0,0.153461973288062,0,0,0,0,0,0.462629081407967,0,0.0821271560138091,0,0.232420756919918,0.120859449591622,0.40101294060657,0.0920809889358963,0.229628896329213,0,0.131124414959424,0,0.0770153371044148,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0,0.219259876645935,0.261435451024901,0,0,0.650756789328606,0.103041011647722,0.27470839445503,0.247528499761764,0,0,0,0,0.308097234229289,0.15350367472613,0,0,0,0,0.0890320356467374,0.330569830721956,0,0.127612712494584,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=348793 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28786 | |||
|TSSclassifier=S | |||
|UniProt=C9JJZ8 | |||
|association_with_transcript=0bp_to_ENST00000429115_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_WDR53_5end | |||
|id=chr3:196295437..196295466,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002262;1.21e-13;2!CL:1000398;1.21e-13;2!CL:0002575;1.21e-13;2!CL:0002567;1.53e-09;3!CL:0000669;1.80e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,9.40e-14,2;CL:1000398,9.40e-14,2;CL:0002575,1.55e-13,2;CL:0002567,1.54e-09,3;CL:0000669,2.04e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.89e-11;10!UBERON:0005564;4.89e-11;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!5.98e-09!34;UBERON:0002020!8.93e-09!34;UBERON:0003528!8.93e-09!34;UBERON:0002791!1.15e-08!33;UBERON:0001049!2.18e-08!57;UBERON:0005068!2.18e-08!57;UBERON:0006241!2.18e-08!57;UBERON:0007135!2.18e-08!57;UBERON:0001869!7.94e-08!32;UBERON:0003075!1.40e-07!86;UBERON:0007284!1.40e-07!86;UBERON:0002780!2.49e-07!41;UBERON:0001890!2.49e-07!41;UBERON:0006240!2.49e-07!41;UBERON:0000956!3.54e-07!25;UBERON:0000203!3.54e-07!25;UBERON:0003080!6.05e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0001281;1.21e-13;2!UBERON:0003497;1.21e-13;2!UBERON:0003909;1.21e-13;2!UBERON:0003835;1.21e-13;2!UBERON:0000473;1.51e-13;8!UBERON:0000991;2.18e-11;21!UBERON:0003135;4.03e-10;11!UBERON:0001280;1.53e-09;3!UBERON:0004647;1.53e-09;3!UBERON:0002119;1.80e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,9.40e-14,2;UBERON:0003497,9.40e-14,2;UBERON:0003909,9.40e-14,2;UBERON:0003835,9.40e-14,2;UBERON:0000473,1.51e-13,8;UBERON:0000991,2.11e-11,21;UBERON:0009196,2.11e-11,21;UBERON:0009117,2.11e-11,21;UBERON:0005564,2.11e-11,21;UBERON:0004176,6.47e-11,22;UBERON:0003135,4.03e-10,11;UBERON:0001280,1.30e-09,3;UBERON:0004647,1.30e-09,3;UBERON:0005171,1.30e-09,3;UBERON:0002119,1.69e-07,4 | |||
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| |||
|short_description=p3@WDR53 | |||
}} |
Revision as of 23:33, 12 September 2013
Short description: | p3@WDR53 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_WDR53_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000429115_5end |
EntrezGene: | WDR53 |
HGNC: | 28786 |
UniProt: | C9JJZ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 9.40e-14 | 2 |
endothelial cell of hepatic sinusoid | 9.40e-14 | 2 |
central nervous system pericyte | 1.55e-13 | 2 |
light melanocyte | 1.54e-09 | 3 |
pericyte cell | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 9.40e-14 | 2 |
abdomen blood vessel | 9.40e-14 | 2 |
sinusoid | 9.40e-14 | 2 |
abdominal segment blood vessel | 9.40e-14 | 2 |
testis | 1.51e-13 | 8 |
gonad | 2.11e-11 | 21 |
indifferent external genitalia | 2.11e-11 | 21 |
indifferent gonad | 2.11e-11 | 21 |
gonad primordium | 2.11e-11 | 21 |
external genitalia | 6.47e-11 | 22 |
male reproductive organ | 4.03e-10 | 11 |
liver parenchyma | 1.30e-09 | 3 |
liver lobule | 1.30e-09 | 3 |
hepatic duct | 1.30e-09 | 3 |
left ovary | 1.69e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.