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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008089!sRNA-Seq@DRS012095
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11956!SRhi10010.CTTGTA
|name=CD8+ T Cells, donor2
|name=CD8+ T Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=RORA:3.33170510617;PITX1..3:3.30176171631;RFX2..5_RFXANK_RFXAP:3.24899083717;PAX3,7:3.23105522459;CREB1:3.22913469144;ATF4:3.20240188101;ATF5_CREB3:3.1430591932;T:3.13210971248;RUNX1..3:2.97514297507;FOX{D1,D2}:2.83644709083;FOXP1:2.78134001247;BPTF:2.74383178893;FOXN1:2.57857407995;TBX4,5:2.46045653029;NFKB1_REL_RELA:2.32645094827;NKX6-1,2:2.27312763554;FOXO1,3,4:2.24316260391;ZBTB16:2.18694352176;FOX{F1,F2,J1}:2.17176186244;DMAP1_NCOR{1,2}_SMARC:2.11672570883;HMX1:2.11442164128;IKZF2:2.08660311702;PAX2:2.0766493643;ELF1,2,4:2.04475109449;TOPORS:1.94867768057;RFX1:1.94445094631;ETS1,2:1.73353209459;PAX4:1.71072350622;JUN:1.66411278961;SPI1:1.51911658748;CDX1,2,4:1.49769125136;ATF6:1.47225693104;NKX2-1,4:1.40038048939;TGIF1:1.29098415881;ZNF384:1.26585270379;BREu{core}:1.19725888698;TLX2:1.12170519711;HIF1A:1.0936226741;IRF1,2:1.0783685598;AIRE:1.02953020496;ATF2:0.958005665111;SPIB:0.919017725334;PPARG:0.9128149511;LEF1_TCF7_TCF7L1,2:0.909295233335;FOX{I1,J2}:0.796384524699;NANOG{mouse}:0.779505227721;SMAD1..7,9:0.691233668569;EGR1..3:0.616097287488;EP300:0.595704440847;MAFB:0.590260484584;FOSL2:0.503804544044;MYB:0.485682611307;TFDP1:0.47105965944;RREB1:0.449873467061;NKX3-1:0.424991565778;GATA6:0.406108941456;HBP1_HMGB_SSRP1_UBTF:0.347709887734;NFE2L1:0.325400639575;FOXD3:0.313672297681;HMGA1,2:0.295451927172;FOXL1:0.278017618188;GCM1,2:0.275624323456;MYFfamily:0.264312958815;FOS_FOS{B,L1}_JUN{B,D}:0.247872749409;ELK1,4_GABP{A,B1}:0.243520296459;SOX2:0.161828187931;NFIL3:0.160320729949;NFATC1..3:0.144721380768;PAX6:0.113855970025;SREBF1,2:0.110146609291;HOX{A6,A7,B6,B7}:0.0289858241667;BACH2:0.0160032532451;RXRA_VDR{dimer}:-0.0273038764401;CUX2:-0.0274955603152;POU2F1..3:-0.0373308128512;NFIX:-0.0487424389864;IRF7:-0.051691262565;NFE2:-0.0537212896241;SNAI1..3:-0.108529077288;ZEB1:-0.151443875807;PDX1:-0.229855489009;MED-1{core}:-0.245395513974;FOXP3:-0.247772619777;CEBPA,B_DDIT3:-0.257951762459;STAT2,4,6:-0.263831458852;EVI1:-0.266197328854;SOX5:-0.300979980119;SPZ1:-0.312943486771;NFY{A,B,C}:-0.323729852616;AR:-0.352240673554;MTF1:-0.353469365819;E2F1..5:-0.357949391154;AHR_ARNT_ARNT2:-0.359379121816;TFAP4:-0.368670384251;ZNF423:-0.369429071306;MTE{core}:-0.371347091716;HES1:-0.398294266378;NR5A1,2:-0.412828255386;PAX5:-0.417182928754;FOXM1:-0.443936261643;TFAP2B:-0.459620864942;GLI1..3:-0.464219138029;SRF:-0.467463914816;HNF4A_NR2F1,2:-0.477252982867;PRRX1,2:-0.504428044134;LMO2:-0.51644239943;MYOD1:-0.532379702026;NKX2-2,8:-0.544300000627;HOXA9_MEIS1:-0.553962482224;NFE2L2:-0.567808540975;bHLH_family:-0.597220455339;XBP1:-0.617963257407;NRF1:-0.618448328999;PBX1:-0.621257812078;ZFP161:-0.629315553658;DBP:-0.64103104062;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.661893817683;ALX4:-0.662431935078;UFEwm:-0.663947819095;HLF:-0.683367348566;OCT4_SOX2{dimer}:-0.704561248011;ZBTB6:-0.715110300221;YY1:-0.735074173569;NHLH1,2:-0.757691278762;CRX:-0.760546192657;TFCP2:-0.781018347628;HNF1A:-0.789082374597;STAT5{A,B}:-0.795007640861;ZIC1..3:-0.817480635929;POU1F1:-0.832651888878;PATZ1:-0.864511568197;TEF:-0.904232588127;REST:-0.91979699911;FOXA2:-0.929937743373;MZF1:-0.937427209372;TFAP2{A,C}:-0.939598709443;FOXQ1:-0.979167047809;GATA4:-0.98908387758;TAL1_TCF{3,4,12}:-0.992015582649;MAZ:-1.02874828245;PAX8:-1.06770443007;POU6F1:-1.07896184079;ALX1:-1.08512866202;HSF1,2:-1.08598695774;NANOG:-1.10923780946;HAND1,2:-1.12212119318;HIC1:-1.14068886329;SOX{8,9,10}:-1.1991401627;NR1H4:-1.20233572194;POU3F1..4:-1.23260244649;SP1:-1.25997980094;ZNF143:-1.26687960032;MEF2{A,B,C,D}:-1.26750168818;ZNF238:-1.31135776857;ZNF148:-1.32355661435;ESRRA:-1.38500423975;SOX17:-1.39511768344;TP53:-1.39808781951;RXR{A,B,G}:-1.41046020712;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41238685249;CDC5L:-1.4397391755;LHX3,4:-1.46238827456;XCPE1{core}:-1.50980449067;STAT1,3:-1.51042669823;TBP:-1.53110680605;NR6A1:-1.53380098955;GFI1:-1.53507920254;HOX{A5,B5}:-1.61871003787;MYBL2:-1.67681279843;GTF2I:-1.71132864576;ONECUT1,2:-1.71653163891;RBPJ:-1.74240644172;ARID5B:-1.74849035267;NKX2-3_NKX2-5:-1.75090054363;HOX{A4,D4}:-1.77288905782;TEAD1:-1.77528094427;GFI1B:-1.79922424041;GTF2A1,2:-1.87325005641;EN1,2:-2.01275106648;ESR1:-2.02428421234;POU5F1:-2.06593860969;GZF1:-2.07949147465;TLX1..3_NFIC{dimer}:-2.16670201288;NKX3-2:-2.27135399945;EBF1:-2.30956028671;KLF4:-2.33092353578;IKZF1:-2.3966241777;PRDM1:-2.43240285126;VSX1,2:-2.45090768326;ADNP_IRX_SIX_ZHX:-2.55984303269;PAX1,9:-2.67968318146;NR3C1:-3.71531058595
|top_motifs=RORA:3.33170510617;PITX1..3:3.30176171631;RFX2..5_RFXANK_RFXAP:3.24899083717;PAX3,7:3.23105522459;CREB1:3.22913469144;ATF4:3.20240188101;ATF5_CREB3:3.1430591932;T:3.13210971248;RUNX1..3:2.97514297507;FOX{D1,D2}:2.83644709083;FOXP1:2.78134001247;BPTF:2.74383178893;FOXN1:2.57857407995;TBX4,5:2.46045653029;NFKB1_REL_RELA:2.32645094827;NKX6-1,2:2.27312763554;FOXO1,3,4:2.24316260391;ZBTB16:2.18694352176;FOX{F1,F2,J1}:2.17176186244;DMAP1_NCOR{1,2}_SMARC:2.11672570883;HMX1:2.11442164128;IKZF2:2.08660311702;PAX2:2.0766493643;ELF1,2,4:2.04475109449;TOPORS:1.94867768057;RFX1:1.94445094631;ETS1,2:1.73353209459;PAX4:1.71072350622;JUN:1.66411278961;SPI1:1.51911658748;CDX1,2,4:1.49769125136;ATF6:1.47225693104;NKX2-1,4:1.40038048939;TGIF1:1.29098415881;ZNF384:1.26585270379;BREu{core}:1.19725888698;TLX2:1.12170519711;HIF1A:1.0936226741;IRF1,2:1.0783685598;AIRE:1.02953020496;ATF2:0.958005665111;SPIB:0.919017725334;PPARG:0.9128149511;LEF1_TCF7_TCF7L1,2:0.909295233335;FOX{I1,J2}:0.796384524699;NANOG{mouse}:0.779505227721;SMAD1..7,9:0.691233668569;EGR1..3:0.616097287488;EP300:0.595704440847;MAFB:0.590260484584;FOSL2:0.503804544044;MYB:0.485682611307;TFDP1:0.47105965944;RREB1:0.449873467061;NKX3-1:0.424991565778;GATA6:0.406108941456;HBP1_HMGB_SSRP1_UBTF:0.347709887734;NFE2L1:0.325400639575;FOXD3:0.313672297681;HMGA1,2:0.295451927172;FOXL1:0.278017618188;GCM1,2:0.275624323456;MYFfamily:0.264312958815;FOS_FOS{B,L1}_JUN{B,D}:0.247872749409;ELK1,4_GABP{A,B1}:0.243520296459;SOX2:0.161828187931;NFIL3:0.160320729949;NFATC1..3:0.144721380768;PAX6:0.113855970025;SREBF1,2:0.110146609291;HOX{A6,A7,B6,B7}:0.0289858241667;BACH2:0.0160032532451;RXRA_VDR{dimer}:-0.0273038764401;CUX2:-0.0274955603152;POU2F1..3:-0.0373308128512;NFIX:-0.0487424389864;IRF7:-0.051691262565;NFE2:-0.0537212896241;SNAI1..3:-0.108529077288;ZEB1:-0.151443875807;PDX1:-0.229855489009;MED-1{core}:-0.245395513974;FOXP3:-0.247772619777;CEBPA,B_DDIT3:-0.257951762459;STAT2,4,6:-0.263831458852;EVI1:-0.266197328854;SOX5:-0.300979980119;SPZ1:-0.312943486771;NFY{A,B,C}:-0.323729852616;AR:-0.352240673554;MTF1:-0.353469365819;E2F1..5:-0.357949391154;AHR_ARNT_ARNT2:-0.359379121816;TFAP4:-0.368670384251;ZNF423:-0.369429071306;MTE{core}:-0.371347091716;HES1:-0.398294266378;NR5A1,2:-0.412828255386;PAX5:-0.417182928754;FOXM1:-0.443936261643;TFAP2B:-0.459620864942;GLI1..3:-0.464219138029;SRF:-0.467463914816;HNF4A_NR2F1,2:-0.477252982867;PRRX1,2:-0.504428044134;LMO2:-0.51644239943;MYOD1:-0.532379702026;NKX2-2,8:-0.544300000627;HOXA9_MEIS1:-0.553962482224;NFE2L2:-0.567808540975;bHLH_family:-0.597220455339;XBP1:-0.617963257407;NRF1:-0.618448328999;PBX1:-0.621257812078;ZFP161:-0.629315553658;DBP:-0.64103104062;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.661893817683;ALX4:-0.662431935078;UFEwm:-0.663947819095;HLF:-0.683367348566;OCT4_SOX2{dimer}:-0.704561248011;ZBTB6:-0.715110300221;YY1:-0.735074173569;NHLH1,2:-0.757691278762;CRX:-0.760546192657;TFCP2:-0.781018347628;HNF1A:-0.789082374597;STAT5{A,B}:-0.795007640861;ZIC1..3:-0.817480635929;POU1F1:-0.832651888878;PATZ1:-0.864511568197;TEF:-0.904232588127;REST:-0.91979699911;FOXA2:-0.929937743373;MZF1:-0.937427209372;TFAP2{A,C}:-0.939598709443;FOXQ1:-0.979167047809;GATA4:-0.98908387758;TAL1_TCF{3,4,12}:-0.992015582649;MAZ:-1.02874828245;PAX8:-1.06770443007;POU6F1:-1.07896184079;ALX1:-1.08512866202;HSF1,2:-1.08598695774;NANOG:-1.10923780946;HAND1,2:-1.12212119318;HIC1:-1.14068886329;SOX{8,9,10}:-1.1991401627;NR1H4:-1.20233572194;POU3F1..4:-1.23260244649;SP1:-1.25997980094;ZNF143:-1.26687960032;MEF2{A,B,C,D}:-1.26750168818;ZNF238:-1.31135776857;ZNF148:-1.32355661435;ESRRA:-1.38500423975;SOX17:-1.39511768344;TP53:-1.39808781951;RXR{A,B,G}:-1.41046020712;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41238685249;CDC5L:-1.4397391755;LHX3,4:-1.46238827456;XCPE1{core}:-1.50980449067;STAT1,3:-1.51042669823;TBP:-1.53110680605;NR6A1:-1.53380098955;GFI1:-1.53507920254;HOX{A5,B5}:-1.61871003787;MYBL2:-1.67681279843;GTF2I:-1.71132864576;ONECUT1,2:-1.71653163891;RBPJ:-1.74240644172;ARID5B:-1.74849035267;NKX2-3_NKX2-5:-1.75090054363;HOX{A4,D4}:-1.77288905782;TEAD1:-1.77528094427;GFI1B:-1.79922424041;GTF2A1,2:-1.87325005641;EN1,2:-2.01275106648;ESR1:-2.02428421234;POU5F1:-2.06593860969;GZF1:-2.07949147465;TLX1..3_NFIC{dimer}:-2.16670201288;NKX3-2:-2.27135399945;EBF1:-2.30956028671;KLF4:-2.33092353578;IKZF1:-2.3966241777;PRDM1:-2.43240285126;VSX1,2:-2.45090768326;ADNP_IRX_SIX_ZHX:-2.55984303269;PAX1,9:-2.67968318146;NR3C1:-3.71531058595
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008089!sRNA-Seq@DRS012095
|accession_numbers=DRX008196;DRR009068;DRZ000493;DRZ001878;CAGE!DRX012364;DRR013812;DRZ003013;NA;sRNA-Seq
|library_id=CNhs11956!SRhi10010.CTTGTA
}}
}}

Revision as of 21:26, 16 October 2013


Name:CD8+ T Cells, donor2
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueblood
dev stage57 years old adult
sexmale
age57
cell typet cell, CD8+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberCD8T726
catalog number3H100-26-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008089
sRNA-Seq  DRS012095
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.186
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0559
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0922
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.259
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.886
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.89
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.186
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.624
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.744
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.836
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.6
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.103
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.515
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.203
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.103
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.217
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.51
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.821
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.813
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.676
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.157
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.497
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.369
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0508
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.496
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.846
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.786
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.744
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0194
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.458
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.369
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.812
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.491
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.852
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.699
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.145
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.87
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.803
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.73
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.103
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.723
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11956

Jaspar motifP-value
MA0002.23.74238e-4
MA0003.10.335
MA0004.10.813
MA0006.10.333
MA0007.10.377
MA0009.10.0289
MA0014.10.647
MA0017.10.0966
MA0018.26.87486e-9
MA0019.10.718
MA0024.10.685
MA0025.10.268
MA0027.10.667
MA0028.10.153
MA0029.10.617
MA0030.10.0203
MA0031.13.20367e-5
MA0035.20.406
MA0038.10.016
MA0039.20.195
MA0040.10.609
MA0041.10.225
MA0042.10.594
MA0043.10.00373
MA0046.10.0339
MA0047.20.67
MA0048.10.64
MA0050.12.60542e-5
MA0051.10.0907
MA0052.10.0289
MA0055.10.583
MA0057.10.205
MA0058.10.746
MA0059.10.783
MA0060.10.0187
MA0061.11.36991e-10
MA0062.21.45051e-7
MA0065.20.881
MA0066.10.661
MA0067.10.00378
MA0068.10.9
MA0069.10.616
MA0070.10.413
MA0071.10.772
MA0072.10.0797
MA0073.10.531
MA0074.10.963
MA0076.10.0822
MA0077.10.0899
MA0078.10.974
MA0079.20.773
MA0080.22.18565e-8
MA0081.10.0425
MA0083.10.314
MA0084.10.244
MA0087.10.548
MA0088.10.197
MA0090.12.68744e-4
MA0091.10.279
MA0092.10.825
MA0093.10.713
MA0099.20.634
MA0100.10.905
MA0101.18.27359e-7
MA0102.20.74
MA0103.10.937
MA0104.20.715
MA0105.14.37854e-8
MA0106.10.0722
MA0107.12.31565e-6
MA0108.21.03725e-4
MA0111.10.408
MA0112.20.288
MA0113.10.487
MA0114.10.18
MA0115.10.244
MA0116.10.114
MA0117.10.0137
MA0119.10.268
MA0122.10.706
MA0124.10.0688
MA0125.10.068
MA0131.10.0812
MA0135.10.178
MA0136.19.32993e-12
MA0137.20.0313
MA0138.20.0593
MA0139.10.841
MA0140.10.672
MA0141.10.186
MA0142.10.124
MA0143.10.206
MA0144.10.192
MA0145.10.0234
MA0146.10.767
MA0147.10.638
MA0148.11
MA0149.10.61
MA0150.10.286
MA0152.10.00132
MA0153.10.144
MA0154.10.779
MA0155.10.182
MA0156.12.59997e-7
MA0157.10.00238
MA0159.10.989
MA0160.10.651
MA0162.10.355
MA0163.10.0205
MA0164.10.592
MA0258.10.964
MA0259.10.767



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11956

Novel motifP-value
10.954
100.00619
1000.735
1010.186
1020.774
1030.28
1040.929
1050.91
1060.124
1070.0632
1080.749
1090.986
110.74
1100.36
1110.476
1120.802
1130.26
1140.701
1150.566
1160.192
1170.0079
1180.537
1190.585
120.78
1200.253
1210.601
1220.727
1233.68154e-6
1240.972
1250.901
1260.702
1270.397
1280.772
1290.155
130.672
1300.146
1310.228
1320.284
1330.816
1340.676
1350.185
1360.739
1370.0626
1380.69
1390.102
140.492
1400.799
1410.948
1420.326
1430.0338
1440.997
1450.499
1460.361
1470.0418
1480.259
1490.216
150.456
1500.828
1510.496
1520.917
1530.404
1540.0813
1550.0925
1560.909
1570.726
1580.0109
1590.881
160.229
1600.0671
1610.676
1620.0589
1630.651
1640.055
1650.866
1660.544
1670.121
1680.41
1690.282
170.548
180.762
190.0616
20.188
200.142
210.999
220.146
230.732
240.379
250.238
260.996
270.461
280.308
290.0953
30.588
300.0358
310.564
320.0373
330.593
340.251
350.342
360.187
370.359
380.598
390.509
40.8
400.803
410.237
420.4
430.618
440.605
450.101
460.912
470.763
480.941
490.185
50.832
500.435
510.977
520.958
530.243
540.945
550.847
560.726
570.977
580.21
590.219
60.909
600.607
610.282
620.369
630.827
640.986
650.534
660.318
670.475
680.851
690.873
70.842
700.2
710.265
720.594
730.498
740.545
750.0558
760.0946
770.00272
780.724
790.586
80.302
800.173
810.906
820.667
830.782
840.115
850.665
860.0384
870.957
880.947
890.00157
90.579
900.664
910.791
920.909
930.958
940.325
950.203
960.792
970.214
980.529
998.09635e-6



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11956


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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