FFCP PHASE1:Hg19::chr1:108593061..108593077,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_at_chr1:108593061..108593077,+ | |||
|id=chr1:108593061..108593077,+ | |||
|ontology_enrichment_celltype=CL:0002009!1.44e-87!65;CL:0002194!2.47e-87!63;CL:0000576!2.47e-87!63;CL:0000040!2.47e-87!63;CL:0000559!2.47e-87!63;CL:0000557!1.80e-85!71;CL:0000766!5.50e-82!76;CL:0002057!2.43e-81!42;CL:0000839!2.98e-80!70;CL:0000860!4.35e-75!45;CL:0000763!1.20e-66!112;CL:0000049!1.20e-66!112;CL:0002087!5.79e-49!119;CL:0000738!6.54e-48!140;CL:0000037!3.30e-47!172;CL:0000566!3.30e-47!172;CL:0002031!3.09e-44!124;CL:0000988!1.21e-43!182;CL:0002032!4.95e-43!165;CL:0000837!4.95e-43!165;CL:0000134!4.97e-15!358;CL:0002320!2.08e-14!365;CL:0000219!7.49e-13!390;CL:0002393!2.75e-11!9;CL:0002397!2.75e-11!9;CL:0000034!1.66e-10!444;CL:0000048!3.18e-10!430;CL:0000723!7.53e-10!436;CL:0000840!2.02e-08!5;CL:0001029!2.02e-08!5;CL:0002619!8.68e-08!3;CL:0000842!2.89e-07!3;CL:0000767!4.29e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.61e-114;33!CL:0002057;1.61e-114;33!CL:0000473;6.52e-108;39!CL:0000234;6.52e-108;39!CL:0000576;3.89e-77;48!CL:0000766;2.98e-45;69!CL:0000763;4.03e-25;100!CL:0002087;6.49e-19;104!CL:0000235;2.45e-17;6!CL:0000738;6.76e-15;136!CL:0002619;4.54e-13;3!CL:0000988;1.28e-09;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.84e-134,48;CL:0000234,8.84e-134,48;CL:0002194,1.14e-122,59;CL:0000576,1.14e-122,59;CL:0000040,1.14e-122,59;CL:0000559,1.14e-122,59;CL:0002009,1.90e-118,61;CL:0000860,6.48e-117,42;CL:0002057,6.48e-117,42;CL:0000557,1.49e-112,67;CL:0000839,5.34e-109,66;CL:0000766,2.29e-99,72;CL:0000763,1.65e-70,108;CL:0000049,1.65e-70,108;CL:0002087,1.46e-62,115;CL:0002031,1.16e-56,120;CL:0000738,1.09e-51,136;CL:0000037,1.02e-44,168;CL:0002032,1.10e-44,161;CL:0000837,1.10e-44,161;CL:0000988,5.01e-42,177;CL:0000235,2.63e-17,6;CL:0000134,9.46e-17,354;CL:0002320,2.95e-16,361;CL:0000219,1.63e-14,386;CL:0002619,3.99e-13,3;CL:0000048,2.22e-12,427;CL:0000723,4.38e-12,433;CL:0000034,1.05e-11,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.50e-83;42!CL:0000049;1.79e-21;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.95e-80!102;UBERON:0003061!4.95e-80!102;UBERON:0002371!2.85e-77!80;UBERON:0002193!7.27e-74!112;UBERON:0001474!7.70e-71!86;UBERON:0004765!2.49e-60!101;UBERON:0001434!2.49e-60!101;UBERON:0002405!3.37e-55!115;UBERON:0003081!4.98e-35!216;UBERON:0002204!2.12e-30!167;UBERON:0002384!2.83e-14!375;UBERON:0000926!3.70e-10!448;UBERON:0004120!3.70e-10!448;UBERON:0006603!3.70e-10!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.95e-98,76;UBERON:0001474,1.01e-90,82;UBERON:0004765,5.10e-82,90;UBERON:0002405,3.89e-79,93;UBERON:0002390,1.90e-78,98;UBERON:0003061,1.90e-78,98;UBERON:0001434,4.47e-73,100;UBERON:0002193,1.75e-70,108;UBERON:0002204,1.39e-40,167;UBERON:0003081,1.02e-33,203;UBERON:0000926,1.06e-18,315;UBERON:0004120,1.06e-18,315;UBERON:0006603,1.06e-18,315;UBERON:0002384,1.40e-15,371;UBERON:0000923,3.46e-07,560;UBERON:0010316,3.46e-07,560;UBERON:0005291,3.46e-07,560;UBERON:0006598,3.46e-07,560;UBERON:0010317,3.46e-07,560;UBERON:0002532,3.46e-07,560;UBERON:0002050,4.51e-07,564 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0.767658796194425,0.154816123316076,0,0,0,0,0,0.880801318004542,1.10799081706375,1.00272223735071,0.651032612147555,2.23915474239924,1.94336199611388,1.28787783817093,12.6496467738221,13.6035339727971,11.886618998203,17.8970358417377,16.0355476328512,15.4853185447552,4.31538588483226,9.99026755463492,5.43909128743746,4.13694816883942,5.80936215225443,0,12.9887214284397,15.5556505532972,15.7306439111559,5.81559395504715,14.1208771913481,7.03270838378945,2.63881040149373,4.78712778291916,2.98357325372886,5.5139755339431,4.53908179752912,4.9825779919646,13.0649305933506,8.86520961314342,8.47036494349955,5.44859552370032,7.73383035573886,5.69632297393592,0.845021145247767,0.425208599930087,1.25795187305026,5.16711703273877,2.25265339262259,0.964353520182481,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0.473554504088034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0.174129737299267,0.398873881556595,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46217006087397,1.8720341211139,2.22946743433092,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,1.00451418286425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,1.50999940573032,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0.476463550915578,0.822724546172388,0,0,0,0,0,0,0,0,0,0,0,0,2.11673582723883,0.649243880549111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0.476809736941136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656740165994712,0,0,0,0,0,0,0,0,0.106787412567695,0,2.89967338743037,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:108593061..108593077,+ | |||
}} |
Revision as of 19:53, 10 January 2014
Short description: | p@chr1:108593061..108593077, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:108593061..108593077, + |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.84e-134 | 48 |
phagocyte | 8.84e-134 | 48 |
monopoietic cell | 1.14e-122 | 59 |
monocyte | 1.14e-122 | 59 |
monoblast | 1.14e-122 | 59 |
promonocyte | 1.14e-122 | 59 |
macrophage dendritic cell progenitor | 1.90e-118 | 61 |
classical monocyte | 6.48e-117 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.48e-117 | 42 |
granulocyte monocyte progenitor cell | 1.49e-112 | 67 |
myeloid lineage restricted progenitor cell | 5.34e-109 | 66 |
myeloid leukocyte | 2.29e-99 | 72 |
myeloid cell | 1.65e-70 | 108 |
common myeloid progenitor | 1.65e-70 | 108 |
nongranular leukocyte | 1.46e-62 | 115 |
hematopoietic lineage restricted progenitor cell | 1.16e-56 | 120 |
leukocyte | 1.09e-51 | 136 |
hematopoietic stem cell | 1.02e-44 | 168 |
hematopoietic oligopotent progenitor cell | 1.10e-44 | 161 |
hematopoietic multipotent progenitor cell | 1.10e-44 | 161 |
hematopoietic cell | 5.01e-42 | 177 |
macrophage | 2.63e-17 | 6 |
mesenchymal cell | 9.46e-17 | 354 |
connective tissue cell | 2.95e-16 | 361 |
motile cell | 1.63e-14 | 386 |
adult endothelial progenitor cell | 3.99e-13 | 3 |
multi fate stem cell | 2.22e-12 | 427 |
somatic stem cell | 4.38e-12 | 433 |
stem cell | 1.05e-11 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.95e-98 | 76 |
bone element | 1.01e-90 | 82 |
skeletal element | 5.10e-82 | 90 |
immune system | 3.89e-79 | 93 |
hematopoietic system | 1.90e-78 | 98 |
blood island | 1.90e-78 | 98 |
skeletal system | 4.47e-73 | 100 |
hemolymphoid system | 1.75e-70 | 108 |
musculoskeletal system | 1.39e-40 | 167 |
lateral plate mesoderm | 1.02e-33 | 203 |
mesoderm | 1.06e-18 | 315 |
mesoderm-derived structure | 1.06e-18 | 315 |
presumptive mesoderm | 1.06e-18 | 315 |
connective tissue | 1.40e-15 | 371 |
germ layer | 3.46e-07 | 560 |
germ layer / neural crest | 3.46e-07 | 560 |
embryonic tissue | 3.46e-07 | 560 |
presumptive structure | 3.46e-07 | 560 |
germ layer / neural crest derived structure | 3.46e-07 | 560 |
epiblast (generic) | 3.46e-07 | 560 |
embryonic structure | 4.51e-07 | 564 |