FFCP PHASE1:Hg19::chr17:54991369..54991386,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7706 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12932 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=1bp_to_ENST00000537230_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_2_at_TRIM25_5end | |||
|id=chr17:54991369..54991386,- | |||
|ontology_enrichment_celltype=CL:0000766!1.60e-20!76;CL:0000763!2.34e-19!112;CL:0000049!2.34e-19!112;CL:0000860!5.59e-19!45;CL:0002057!9.13e-19!42;CL:0000557!3.67e-18!71;CL:0000063!6.43e-17!578;CL:0002009!1.50e-16!65;CL:0002194!1.57e-16!63;CL:0000576!1.57e-16!63;CL:0000040!1.57e-16!63;CL:0000559!1.57e-16!63;CL:0000839!3.73e-16!70;CL:0000037!1.48e-14!172;CL:0000566!1.48e-14!172;CL:0000988!6.79e-14!182;CL:0002032!8.44e-14!165;CL:0000837!8.44e-14!165;CL:0000738!3.08e-12!140;CL:0000012!3.05e-10!682;CL:0002031!6.21e-10!124;CL:0002078!7.99e-10!44;CL:0002087!8.26e-10!119;CL:0000548!1.28e-09!679;CL:0000004!1.28e-09!679;CL:0000255!1.28e-09!679;CL:0000213!5.17e-09!57;CL:0000215!5.17e-09!57;CL:0000115!5.91e-09!35;CL:0002139!1.65e-08!24;CL:0000076!2.38e-08!62;CL:0000066!8.29e-08!254;CL:0002371!2.29e-07!591;CL:0000003!7.72e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.51e-19;33!CL:0002057;7.51e-19;33!CL:0000473;1.86e-14;39!CL:0000234;1.86e-14;39!CL:0000576;8.67e-13;48!CL:0000766;1.26e-10;69!CL:0002139;1.20e-08;24!CL:0000763;1.33e-08;100!CL:0000115;1.84e-07;36!CL:0002078;5.51e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.83e-21,72;CL:0000763,8.88e-20,108;CL:0000049,8.88e-20,108;CL:0000860,4.83e-19,42;CL:0002057,4.83e-19,42;CL:0000557,1.29e-18,67;CL:0000473,4.22e-18,48;CL:0000234,4.22e-18,48;CL:0002009,5.57e-17,61;CL:0002194,5.57e-17,59;CL:0000576,5.57e-17,59;CL:0000040,5.57e-17,59;CL:0000559,5.57e-17,59;CL:0000839,1.52e-16,66;CL:0000037,1.17e-14,168;CL:0002032,6.85e-14,161;CL:0000837,6.85e-14,161;CL:0000988,9.26e-14,177;CL:0000738,2.35e-12,136;CL:0002078,6.47e-10,45;CL:0002031,6.84e-10,120;CL:0002087,9.37e-10,115;CL:0000115,3.83e-09,36;CL:0000213,7.35e-09,58;CL:0000215,7.35e-09,58;CL:0002139,1.27e-08,24;CL:0000076,5.52e-08,63;CL:0000066,7.80e-08,253 | |||
|ontology_enrichment_development_v019=CL:0002057;3.88e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.13e-23!112;UBERON:0002390!6.62e-21!102;UBERON:0003061!6.62e-21!102;UBERON:0002405!3.80e-19!115;UBERON:0002371!8.60e-17!80;UBERON:0001474!2.14e-16!86;UBERON:0004765!2.01e-13!101;UBERON:0001434!2.01e-13!101;UBERON:0003081!3.56e-13!216;UBERON:0000926!9.49e-11!448;UBERON:0004120!9.49e-11!448;UBERON:0006603!9.49e-11!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,7.32e-24,108;UBERON:0002390,4.69e-21,98;UBERON:0003061,4.69e-21,98;UBERON:0002405,2.14e-20,93;UBERON:0002371,5.23e-17,76;UBERON:0001474,1.45e-16,82;UBERON:0003081,1.03e-13,203;UBERON:0004765,1.14e-13,90;UBERON:0001434,4.35e-12,100;UBERON:0000926,1.20e-08,315;UBERON:0004120,1.20e-08,315;UBERON:0006603,1.20e-08,315 | |||
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| |||
|short_description=p2@TRIM25 | |||
}} |
Revision as of 16:25, 20 January 2014
Short description: | p2@TRIM25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRIM25_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 1bp_to_ENST00000537230_5end |
EntrezGene: | TRIM25 |
HGNC: | 12932 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.83e-21 | 72 |
myeloid cell | 8.88e-20 | 108 |
common myeloid progenitor | 8.88e-20 | 108 |
classical monocyte | 4.83e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.83e-19 | 42 |
granulocyte monocyte progenitor cell | 1.29e-18 | 67 |
defensive cell | 4.22e-18 | 48 |
phagocyte | 4.22e-18 | 48 |
macrophage dendritic cell progenitor | 5.57e-17 | 61 |
monopoietic cell | 5.57e-17 | 59 |
monocyte | 5.57e-17 | 59 |
monoblast | 5.57e-17 | 59 |
promonocyte | 5.57e-17 | 59 |
myeloid lineage restricted progenitor cell | 1.52e-16 | 66 |
hematopoietic stem cell | 1.17e-14 | 168 |
hematopoietic oligopotent progenitor cell | 6.85e-14 | 161 |
hematopoietic multipotent progenitor cell | 6.85e-14 | 161 |
hematopoietic cell | 9.26e-14 | 177 |
leukocyte | 2.35e-12 | 136 |
meso-epithelial cell | 6.47e-10 | 45 |
hematopoietic lineage restricted progenitor cell | 6.84e-10 | 120 |
nongranular leukocyte | 9.37e-10 | 115 |
endothelial cell | 3.83e-09 | 36 |
lining cell | 7.35e-09 | 58 |
barrier cell | 7.35e-09 | 58 |
endothelial cell of vascular tree | 1.27e-08 | 24 |
squamous epithelial cell | 5.52e-08 | 63 |
epithelial cell | 7.80e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 7.32e-24 | 108 |
hematopoietic system | 4.69e-21 | 98 |
blood island | 4.69e-21 | 98 |
immune system | 2.14e-20 | 93 |
bone marrow | 5.23e-17 | 76 |
bone element | 1.45e-16 | 82 |
lateral plate mesoderm | 1.03e-13 | 203 |
skeletal element | 1.14e-13 | 90 |
skeletal system | 4.35e-12 | 100 |
mesoderm | 1.20e-08 | 315 |
mesoderm-derived structure | 1.20e-08 | 315 |
presumptive mesoderm | 1.20e-08 | 315 |