FFCP PHASE1:Hg19::chr2:177502254..177502360,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=375295 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000339037,NR_040001_5end | |||
|description=CAGE_peak_1_at_LOC375295_5end | |||
|id=chr2:177502254..177502360,- | |||
|ontology_enrichment_celltype=CL:0000055!4.19e-15!180;CL:0002620!9.77e-12!23;CL:0000057!1.09e-11!75;CL:0000222!7.30e-08!119;CL:0002334!4.72e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.00e-13;23!CL:1000497;9.50e-09;17!CL:0002518;9.50e-09;17!CL:0002334;4.49e-08;12!CL:1000449;2.60e-07;15!CL:0002570;3.39e-07;8!CL:0000134;8.39e-07;55!CL:0002139;9.31e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,5.29e-13,23;CL:0000057,3.84e-11,76;CL:1000497,8.60e-09,17;CL:0002518,8.60e-09,17;CL:0002334,3.67e-08,12;CL:0002078,1.57e-07,45;CL:1000449,2.37e-07,15;CL:0002570,3.34e-07,8;CL:0002139,9.22e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!9.55e-08!14;DOID:120!1.10e-07!27;DOID:193!3.90e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.97e-09;14!DOID:120;8.42e-08;27!DOID:193;2.41e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.40e-09,14;DOID:120,8.49e-08,27;DOID:193,2.24e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0002199!1.92e-12!45;UBERON:0002416!1.92e-12!45;UBERON:0002097!1.37e-10!40;UBERON:0002100!8.68e-10!216;UBERON:0003064!6.74e-09!37;UBERON:0006554!2.86e-08!44;UBERON:0003886!2.93e-08!63;UBERON:0001008!3.05e-08!45;UBERON:0001013!7.99e-08!14;UBERON:0003102!1.49e-07!95;UBERON:0004876!1.97e-07!20;UBERON:0005256!2.40e-07!143;UBERON:0005156!2.47e-07!59;UBERON:0000990!2.47e-07!59;UBERON:0002553!3.74e-07!70;UBERON:0000489!3.87e-07!32;UBERON:0000475!4.45e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;4.35e-11;41!UBERON:0002199;1.57e-09;46!UBERON:0002416;1.57e-09;46!UBERON:0001013;1.71e-08;14!UBERON:0003102;4.73e-08;50!UBERON:0006555;2.60e-07;15!UBERON:0004819;2.60e-07;15!UBERON:0001285;2.60e-07;15!UBERON:0007684;2.60e-07;15!UBERON:0001473;3.28e-07;8!UBERON:0004536;3.28e-07;8!UBERON:0006558;3.28e-07;8!UBERON:0002067;7.20e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.12e-15,46;UBERON:0002416,1.12e-15,46;UBERON:0002097,8.01e-14,41;UBERON:0001013,1.45e-08,14;UBERON:0006555,4.00e-08,16;UBERON:0004819,4.00e-08,16;UBERON:0000489,1.49e-07,31;UBERON:0002100,1.64e-07,199;UBERON:0002113,1.84e-07,26;UBERON:0003918,1.84e-07,26;UBERON:0011143,1.84e-07,26;UBERON:0005095,1.84e-07,26;UBERON:0007687,1.84e-07,26;UBERON:0004211,2.37e-07,15;UBERON:0009773,2.37e-07,15;UBERON:0001231,2.37e-07,15;UBERON:0001285,2.37e-07,15;UBERON:0007684,2.37e-07,15;UBERON:0004208,2.37e-07,15;UBERON:0005156,3.13e-07,59;UBERON:0000990,3.13e-07,59;UBERON:0001473,3.51e-07,8;UBERON:0004536,3.51e-07,8;UBERON:0006558,3.51e-07,8;UBERON:0003886,5.13e-07,54;UBERON:0002067,7.25e-07,9;UBERON:0004016,7.25e-07,9;UBERON:0010083,7.25e-07,9;UBERON:0003102,7.90e-07,99 | |||
|phase1_expression=19.0762298234084,14.1306345768049,2.67813367782345,7.00513088471913,0.893922188854576,12.2127393374052,32.9289841618804,9.47579810140246,0.261185628199839,0.245733936501509,0,0,0,2.59909341216098,3.31397375727916,0,0,0,1.95173119516203,0.123121058076788,0.408001382488506,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,0.255725123687061,14.0961269429981,2.50668955317945,8.25625158076695,8.74814541756209,14.1124112387764,0,0,0,4.6497571801688,0,0,0,0,0,0,0,0,0,1.72046919021225,0,0,0,0.825354125820202,1.04497483268405,16.2802558276677,20.2786769731425,9.0374565446461,22.1556124410031,26.6095237001479,14.1555993377938,19.1184801779852,5.67099363517232,9.73367038296469,5.38870494302808,6.53146586803269,4.5994991239765,7.59412527654503,1.46561395144326,0,0,0.872188104285069,14.9091585508596,0,0,0,0.354668382198357,0.560677600142307,0,0.24666754841716,0,0.269421344139376,0.326923806226917,0,0,0.234321431833797,16.8566441488373,5.13424639390004,9.56471555531527,5.40198693761318,9.87424960645602,12.2192201830956,0,0.122834317311768,0.206651562351531,1.18800285728205,0.989067717114227,20.0235499626366,26.5888712472008,0,0.125118519871964,0,0.438977620880838,2.45190236639216,1.65261864797256,0.226864366320042,19.3740806543971,24.1319849364981,13.1397778718928,21.3064678219926,28.2363930113323,5.92573242104947,9.1197259602479,17.0464095563679,21.6310151457861,13.8838575834263,15.5564328705486,0.80823028409406,18.8155084033806,28.9158521913328,2.88253006927829,0.966304265816484,0,0,0,0.132529768321485,0,0.10366105501537,0,0,31.2899064659632,43.0971428589233,45.5845240463186,30.6482832501106,56.3065995702277,0.118306800039844,0,0,0.110293972732394,0,0,0,0,0,0,2.80483547606892,3.2925920906512,10.2906097969879,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0.234817388471643,21.7993336119221,17.5934494779112,24.5427856382632,0,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,4.19086102328316,4.96584953225761,3.51652341630141,5.13217338068116,2.87916979569306,0.300343057843917,4.0015700568281,0.336393253036082,0,0.07333828582095,9.69537868183333,17.8828222925941,10.143633030672,8.77595784730073,11.4408180602503,6.17297698229141,8.5109479213967,9.59119844457958,0.142977993658148,6.51145926469732,6.58592269424615,11.7265026345745,0,1.58390374586686,0.904318131178758,0.871533458600294,0.799783929456456,0,0,0,0,0,2.85273810081437,15.491599813431,0,1.79060963239896,0,0,0,0,0,0,0,0,0,0,0,0,1.8403723757871,0.500170521059677,1.62759014219841,0,0,0.473107245101804,0,18.0567659836631,4.5481500811197,5.17365356462525,23.9121215472757,17.8838093485452,0.695068915744663,0,0,0,0,0,0,0,0,17.1194387394956,12.8908057561972,22.1721474602128,4.10045277618243,15.3512174720011,1.93024705372329,14.8418066444991,16.8088566244895,25.7464501704034,21.517314875618,3.63478100428535,24.8690209904313,0,4.41114234667227,1.19705285616665,0.918515585316854,3.27764102412091,7.47409165268718,4.51199612907412,3.92778219232515,3.92174884588428,14.6139224653261,8.02192379585855,10.2360045663807,10.885997137697,16.4096096237626,16.9649977959318,7.85744668877173,11.0371750248068,12.2340611061618,9.97291210714469,15.2234833211081,0,0,0,0,0,0.618246069886334,2.47237555009527,2.22775649785588,0,0,46.5983396548063,5.89691381581944,10.1672087295665,9.21022048356777,10.0620697913707,9.45298154840808,6.38073453222605,9.2044757609389,8.72513949338026,0.330569830721956,0.576570202095319,0,0.10115778085555,0.464845549297286,0.31481234683064,0,0,0.532306030317022,0,0.55597265731176,0,0.744316738719335,0.632758849437452,2.2875623270859,0.255897791311334,0,0.318203247925937,0.78494864019923,3.95719406683292,3.0199073270966,2.00281083987667,1.01091240786658,1.58510321173008,0.421258456238981,0,8.04254515783239,1.05650146756755,3.13949796238367,5.65621727814851,0,3.30819206127675,0,0,1.15755106853338,0.655894752046633,1.42037263873893,2.478587984798,0.281695602532241,3.29846110069318,2.84922218938051,0.7133421029625,0.709522128141196,28.0773154945893,25.3557067579124,0,0,0.288666338176536,0,0,1.03558180854457,1.29151611801369,5.05414427002877,0.886860307073351,0.459446800413919,0,0,0,0,0,0,0,0,0,0.962479855263359,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,1.35433422241283,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,1.90460633053462,22.45169652366,0,0,0.23874448473769,0,0,0.994147647766298,0,10.5743269771761,1.6480387422676,0,1.39473591775749,0.828851746593443,2.01546198283421,0,0,21.4617315486647,5.48196941998694,0.179021174675609,0,2.56472854656027,0,7.77958931012458,0,0.649376687132959,0,0,0,7.24999575434793,6.14484620741698,1.01701460117107,41.8406196729247,1.03423011972439,7.58171994796461,0.347249989866585,0,0.120596438625408,0,0,0,1.53569778007781,0,0.139423744278603,4.2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| |||
|short_description=p1@LOC375295 | |||
}} |
Revision as of 06:47, 21 January 2014
Short description: | p1@LOC375295 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC375295_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000339037, NR_040001_5end |
EntrezGene: | LOC375295 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 5.29e-13 | 23 |
fibroblast | 3.84e-11 | 76 |
kidney cell | 8.60e-09 | 17 |
kidney epithelial cell | 8.60e-09 | 17 |
preadipocyte | 3.67e-08 | 12 |
meso-epithelial cell | 1.57e-07 | 45 |
epithelial cell of nephron | 2.37e-07 | 15 |
mesenchymal stem cell of adipose | 3.34e-07 | 8 |
endothelial cell of vascular tree | 9.22e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
integument | 1.12e-15 | 46 |
integumental system | 1.12e-15 | 46 |
skin of body | 8.01e-14 | 41 |
adipose tissue | 1.45e-08 | 14 |
excretory tube | 4.00e-08 | 16 |
kidney epithelium | 4.00e-08 | 16 |
cavitated compound organ | 1.49e-07 | 31 |
trunk | 1.64e-07 | 199 |
kidney | 1.84e-07 | 26 |
kidney mesenchyme | 1.84e-07 | 26 |
upper urinary tract | 1.84e-07 | 26 |
kidney rudiment | 1.84e-07 | 26 |
kidney field | 1.84e-07 | 26 |
nephron epithelium | 2.37e-07 | 15 |
renal tubule | 2.37e-07 | 15 |
nephron tubule | 2.37e-07 | 15 |
nephron | 2.37e-07 | 15 |
uriniferous tubule | 2.37e-07 | 15 |
nephrogenic mesenchyme | 2.37e-07 | 15 |
reproductive structure | 3.13e-07 | 59 |
reproductive system | 3.13e-07 | 59 |
lymphatic vessel | 3.51e-07 | 8 |
lymph vasculature | 3.51e-07 | 8 |
lymphatic part of lymphoid system | 3.51e-07 | 8 |
body cavity precursor | 5.13e-07 | 54 |
dermis | 7.25e-07 | 9 |
dermatome | 7.25e-07 | 9 |
future dermis | 7.25e-07 | 9 |
surface structure | 7.90e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.40e-09 | 14 |
female reproductive organ cancer | 8.49e-08 | 27 |
reproductive organ cancer | 2.24e-07 | 29 |