FFCP PHASE1:Hg19::chr6:30890373..30890381,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57176 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21642 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=13bp_to_ENST00000477052_5end | |||
|coexpression_cluster_id=C1044 | |||
|description=CAGE_peak_9_at_VARS2_5end | |||
|id=chr6:30890373..30890381,+ | |||
|ontology_enrichment_celltype=CL:0000239!3.15e-20!3;CL:1000615!3.15e-20!3;CL:0002306!3.15e-20!3;CL:0002327!3.46e-15!4;CL:0002536!4.54e-14!2;CL:1000449!9.63e-14!16;CL:1000507!5.47e-13!12;CL:1000494!5.47e-13!12;CL:0002537!2.18e-12!5;CL:1000497!3.71e-12!18;CL:0002518!3.71e-12!18;CL:0002681!3.88e-12!13;CL:0002584!3.88e-12!13;CL:0000066!1.50e-10!254;CL:0002541!9.54e-10!3 | |||
|ontology_enrichment_celltype_v019=CL:0000239;7.81e-45;3!CL:1000615;7.81e-45;3!CL:0002306;7.81e-45;3!CL:0002537;2.08e-27;5!CL:0000349;2.21e-16;19!CL:1000507;2.84e-14;10!CL:1000494;2.84e-14;10!CL:0002541;3.06e-12;3!CL:0002681;4.54e-12;12!CL:0002584;4.54e-12;12!CL:1000449;7.41e-10;15!CL:0002327;1.63e-09;4!CL:1000497;8.23e-09;17!CL:0002518;8.23e-09;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,7.81e-45,3;CL:1000615,7.81e-45,3;CL:0002306,7.81e-45,3;CL:0002537,2.08e-27,5;CL:0000349,2.27e-16,19;CL:1000507,2.84e-14,10;CL:1000494,2.84e-14,10;CL:0002541,3.24e-12,3;CL:0002681,4.54e-12,12;CL:0002584,4.54e-12,12;CL:1000449,7.41e-10,15;CL:0002327,1.57e-09,4;CL:1000497,8.23e-09,17;CL:0002518,8.23e-09,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3111!1.07e-07!1;DOID:3603!1.07e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000305!3.20e-23!7;UBERON:0005631!4.47e-22!14;UBERON:0000158!4.47e-22!14;UBERON:0004871!2.67e-20!8;UBERON:0006853!3.15e-20!3;UBERON:0007685!3.15e-20!3;UBERON:0004134!3.15e-20!3;UBERON:0001911!3.46e-15!4;UBERON:0005333!3.46e-15!4;UBERON:0008425!3.46e-15!4;UBERON:0005311!3.46e-15!4;UBERON:0004211!9.63e-14!16;UBERON:0001285!9.63e-14!16;UBERON:0007684!9.63e-14!16;UBERON:0003220!9.63e-14!16;UBERON:0004208!9.63e-14!16;UBERON:0009773!5.47e-13!12;UBERON:0001231!5.47e-13!12;UBERON:0004810!5.47e-13!12;UBERON:0006555!6.65e-13!17;UBERON:0005103!6.65e-13!17;UBERON:0000083!6.65e-13!17;UBERON:0009201!6.65e-13!17;UBERON:0004819!6.65e-13!17;UBERON:0006553!6.65e-13!17;UBERON:0003074!6.65e-13!17;UBERON:0003060!6.65e-13!17;UBERON:0000478!1.63e-12!24;UBERON:0003064!2.20e-12!37;UBERON:0000080!3.71e-12!18;UBERON:0002120!3.71e-12!18;UBERON:0004875!3.71e-12!18;UBERON:0005721!3.71e-12!18;UBERON:0005754!3.71e-12!18;UBERON:0007297!3.71e-12!18;UBERON:0001225!3.88e-12!13;UBERON:0008987!3.88e-12!13;UBERON:0000058!4.46e-11!26;UBERON:0004876!6.91e-11!20;UBERON:0003887!2.42e-10!21;UBERON:0006554!3.50e-10!44;UBERON:0001008!6.34e-10!45;UBERON:0001851!8.07e-10!16;UBERON:0000476!9.54e-10!3;UBERON:0000920!9.54e-10!3;UBERON:0000353!3.15e-09!17;UBERON:0002113!6.39e-08!27;UBERON:0003918!6.39e-08!27;UBERON:0005095!6.39e-08!27;UBERON:0007687!6.39e-08!27;UBERON:0000076!7.87e-08!8;UBERON:0004923!1.04e-07!57;UBERON:0005153!1.34e-07!37;UBERON:0000997!2.63e-07!1;UBERON:0005056!2.63e-07!1;UBERON:0003101!6.69e-07!22;UBERON:0000079!6.69e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0006853;7.81e-45;3!UBERON:0007685;7.81e-45;3!UBERON:0004134;7.81e-45;3!UBERON:0005631;2.64e-30;10!UBERON:0000158;2.64e-30;10!UBERON:0000305;6.48e-20;7!UBERON:0004211;2.84e-14;10!UBERON:0009773;2.84e-14;10!UBERON:0001231;2.84e-14;10!UBERON:0004810;2.84e-14;10!UBERON:0000478;3.86e-13;24!UBERON:0003124;3.06e-12;3!UBERON:0000920;3.06e-12;3!UBERON:0001225;4.54e-12;12!UBERON:0008987;4.54e-12;12!UBERON:0001851;7.41e-10;15!UBERON:0006555;7.41e-10;15!UBERON:0000353;7.41e-10;15!UBERON:0004819;7.41e-10;15!UBERON:0001285;7.41e-10;15!UBERON:0007684;7.41e-10;15!UBERON:0001911;1.63e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006853,7.81e-45,3;UBERON:0007685,7.81e-45,3;UBERON:0004134,7.81e-45,3;UBERON:0005631,6.67e-22,14;UBERON:0000158,6.67e-22,14;UBERON:0000305,6.48e-20,7;UBERON:0004871,1.44e-17,8;UBERON:0004810,2.84e-14,10;UBERON:0000478,3.94e-13,24;UBERON:0000920,3.24e-12,3;UBERON:0001225,4.54e-12,12;UBERON:0008987,4.54e-12,12;UBERON:0001851,7.41e-10,15;UBERON:0004211,7.41e-10,15;UBERON:0009773,7.41e-10,15;UBERON:0000353,7.41e-10,15;UBERON:0001231,7.41e-10,15;UBERON:0001285,7.41e-10,15;UBERON:0007684,7.41e-10,15;UBERON:0004208,7.41e-10,15;UBERON:0001911,1.57e-09,4;UBERON:0005333,1.57e-09,4;UBERON:0008425,1.57e-09,4;UBERON:0005311,1.57e-09,4;UBERON:0006555,2.66e-09,16;UBERON:0004819,2.66e-09,16 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.873765488520689,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.716468181622786,1.16253575405585,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552485933615378,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,5.09752546090077,10.8039881160734,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.92359005739301,0.296964680832639,7.06469614828234,0,0,0,0,0,0,0,0,0,0,0,0.359473404589307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957003479195758,0,1.06606955203727,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p9@VARS2 | |||
}} |
Revision as of 10:56, 22 January 2014
Short description: | p9@VARS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_VARS2_5end |
Coexpression cluster: | C1044_Renal_amniotic_Mammary_chorionic_bile_prostate_Amniotic |
Association with transcript: | 13bp_to_ENST00000477052_5end |
EntrezGene: | VARS2 |
HGNC: | 21642 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 7.81e-45 | 3 |
kidney cortex tubule cell | 7.81e-45 | 3 |
epithelial cell of proximal tubule | 7.81e-45 | 3 |
amnion mesenchymal stem cell | 2.08e-27 | 5 |
extraembryonic cell | 2.27e-16 | 19 |
kidney tubule cell | 2.84e-14 | 10 |
nephron tubule epithelial cell | 2.84e-14 | 10 |
chorionic membrane mesenchymal stem cell | 3.24e-12 | 3 |
kidney cortical cell | 4.54e-12 | 12 |
renal cortical epithelial cell | 4.54e-12 | 12 |
epithelial cell of nephron | 7.41e-10 | 15 |
mammary gland epithelial cell | 1.57e-09 | 4 |
kidney cell | 8.23e-09 | 17 |
kidney epithelial cell | 8.23e-09 | 17 |
Ontology term | p-value | n |
---|---|---|
renal cortex tubule | 7.81e-45 | 3 |
region of nephron tubule | 7.81e-45 | 3 |
proximal tubule | 7.81e-45 | 3 |
extraembryonic membrane | 6.67e-22 | 14 |
membranous layer | 6.67e-22 | 14 |
amnion | 6.48e-20 | 7 |
somatic layer of lateral plate mesoderm | 1.44e-17 | 8 |
nephron tubule epithelium | 2.84e-14 | 10 |
extraembryonic structure | 3.94e-13 | 24 |
egg chorion | 3.24e-12 | 3 |
cortex of kidney | 4.54e-12 | 12 |
renal parenchyma | 4.54e-12 | 12 |
cortex | 7.41e-10 | 15 |
nephron epithelium | 7.41e-10 | 15 |
renal tubule | 7.41e-10 | 15 |
parenchyma | 7.41e-10 | 15 |
nephron tubule | 7.41e-10 | 15 |
nephron | 7.41e-10 | 15 |
uriniferous tubule | 7.41e-10 | 15 |
nephrogenic mesenchyme | 7.41e-10 | 15 |
mammary gland | 1.57e-09 | 4 |
mammary bud | 1.57e-09 | 4 |
mammary ridge | 1.57e-09 | 4 |
mammary placode | 1.57e-09 | 4 |
excretory tube | 2.66e-09 | 16 |
kidney epithelium | 2.66e-09 | 16 |