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{{UBERON
{{UBERON
|id=UBERON:0002113
|alt_id=UBERON:FMA_7204-MA_0001683;;UBERON:FMA_7205-MA_0001655
|name=kidney
|anatomical_img_id=FMA:7204
|namespace=
|def="A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney]
|xref=AAO:0000250;;BTO:0000671;;EFO:0000929;;EV:0100096;;FMA:7203;;GAID:423;;galen:Kidney;;MA:0000368;;MAT:0000119;;MESH:A.05.810.453;;MIAA:0000119;;ncithesaurus:Kidney;;OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA;;SCTID:181414000;;TAO:0000529;;XAO:0003267
|is_a=UBERON:0000489;;UBERON:0004120;;UBERON:0005172;;UBERON:0006554
|synonym="kidney" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_7204-MA_0001683;;UBERON:FMA_7205-MA_0001655
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney]
|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003918;;UBERON:0005095
|develops_from=UBERON:0003918;;UBERON:0005095
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002113
|is_a=UBERON:0000489 ;;UBERON:0005172 ;;UBERON:0006554 ;;UBERON:0015212
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000916;;UBERON:0001008
|name=kidney
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|is_obsolete=
|obo_creation_date=
|part_of=UBERON:0000916;;UBERON:0011143
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000160;;UBPROP:0000001 "One of either of a pair of structures lying on either side of the dorsal aorta in which fluid balance is regulated and waste is excreted out in the form of urine.[AAO]" xsd:string
|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core
|synonym="kidney" EXACT []
|union_of=
|xref=AAO:0000250;;BTO:0000671;;EFO:0000929;;EV:0100096;;FMA:7203;;GAID:423;;galen:Kidney;;MA:0000368;;MAT:0000119;;MESH:A.05.810.453;;MIAA:0000119;;ncithesaurus:Kidney;;OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA;;SCTID:181414000;;TAO:0000529;;XAO:0003267
}}
}}

Latest revision as of 17:26, 12 September 2014

Name:kidney
Namespace:FANTOM
Definition:"A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney]
Xrefs:
links:

AAO:0000250
BTO:0000671
EFO:0000929
EV:0100096
FMA:7203
GAID:423
galen:Kidney
MA:0000368
MAT:0000119
MESH:A.05.810.453
MIAA:0000119
ncithesaurus:Kidney
OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA
SCTID:181414000
TAO:0000529

XAO:0003267
Synonyms: "kidney" EXACT []
Alt_id: UBERON:FMA_7204-MA_0001683
UBERON:FMA_7205-MA_0001655
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000489(cavitated compound organ),UBERON:0005172(abdomen element),UBERON:0006554(urinary system structure),UBERON:0015212(lateral structure)
develops_from:UBERON:0003918(kidney mesenchyme),UBERON:0005095(kidney rudiment)
part_of:UBERON:0000916(abdomen),UBERON:0011143(upper urinary tract)



Children

is a:UBERON:0000080 (mesonephros),UBERON:0002120 (pronephros)
derives from:FF:0010017 (human kidney - adult sample),FF:0010045 (human kidney - fetal sample),FF:0011341 (mouse kidney- embryo E14 sample),FF:0011350 (mouse kidney- embryo E15 sample),FF:0011363 (mouse kidney- embryo E16 sample),FF:0011371 (mouse kidney- embryo E17 sample),FF:0011396 (mouse kidney- neonate N00 sample),FF:0011419 (mouse kidney- neonate N10 sample),FF:0011432 (mouse kidney- neonate N20 sample),FF:0011482 (mouse kidney- neonate N25 sample),FF:0011483 (mouse kidney- neonate N30 sample),FF:0011512 (mouse kidney- embryo E18 sample),FF:0100067 (kidney cell line sample),FF:0102733 (embryonic kidney cell line sample)
part of:UBERON:0001225 (cortex of kidney),CL:0002518 (kidney epithelial cell),UBERON:0004819 (kidney epithelium),UBERON:0005215 (kidney interstitium),UBERON:0006553 (renal duct),UBERON:0007684 (uriniferous tubule),UBERON:0008987 (renal parenchyma),UBERON:0009201 (nephric duct),UBERON:0010532 (primitive nephron),CL:1000497 (kidney cell),CL:1001318 (renal interstitial pericyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002113 (kidney), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "One of either of a pair of structures lying on either side of the dorsal aorta in which fluid balance is regulated and waste is excreted out in the form of urine.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.