FFCP PHASE1:Hg19::chr12:53494502..53494543,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:53494502..53494543,+ | |||
|description=CAGE_peak_at_chr12:53494502..53494543,+ | |description=CAGE_peak_at_chr12:53494502..53494543,+ | ||
|id=chr12:53494502..53494543,+ | |id=chr12:53494502..53494543,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.08e-26!180;CL:0000680!1.14e-18!57;CL:0000056!1.14e-18!57;CL:0000355!1.14e-18!57;CL:0000187!7.35e-18!54;CL:0000183!4.83e-17!59;CL:0000192!1.37e-15!42;CL:0000514!1.37e-15!42;CL:0000393!8.28e-15!60;CL:0000211!8.28e-15!60;CL:0000057!8.79e-15!75;CL:0000359!1.61e-12!32;CL:0000222!4.58e-12!119;CL:0000220!2.80e-08!246;CL:0002321!5.78e-08!248;CL:0000499!3.77e-07!27;CL:0002334!9.92e-07!12 | |ontology_enrichment_celltype=CL:0000055!1.08e-26!180;CL:0000680!1.14e-18!57;CL:0000056!1.14e-18!57;CL:0000355!1.14e-18!57;CL:0000187!7.35e-18!54;CL:0000183!4.83e-17!59;CL:0000192!1.37e-15!42;CL:0000514!1.37e-15!42;CL:0000393!8.28e-15!60;CL:0000211!8.28e-15!60;CL:0000057!8.79e-15!75;CL:0000359!1.61e-12!32;CL:0000222!4.58e-12!119;CL:0000220!2.80e-08!246;CL:0002321!5.78e-08!248;CL:0000499!3.77e-07!27;CL:0002334!9.92e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000359;3.18e-15;32!CL:0000192;5.70e-13;43!CL:0000499;1.07e-10;28!CL:0002595;4.86e-10;5!CL:0000187;4.02e-08;55!CL:0000393;2.69e-07;61!CL:0000211;2.69e-07;61!CL:0000135;7.54e-07;3!CL:0000388;7.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,4.57e-16,43;CL:0000514,4.57e-16,43;CL:0000359,4.66e-16,32;CL:0000680,3.79e-15,58;CL:0000056,3.79e-15,58;CL:0000355,3.79e-15,58;CL:0000187,5.13e-15,55;CL:0000393,8.74e-13,61;CL:0000211,8.74e-13,61;CL:0000499,2.55e-10,28;CL:0002595,5.42e-10,5;CL:0000057,1.40e-09,76;CL:0000222,5.62e-08,121;CL:0000048,4.38e-07,427;CL:0000135,7.96e-07,3;CL:0000388,7.96e-07,3;CL:0000723,9.97e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;5.70e-13;43!CL:0000355;1.03e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;4.15e-07;3!DOID:127;4.15e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,4.27e-07,3;DOID:127,4.27e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0002385!1.40e-17!63;UBERON:0001015!1.40e-17!63;UBERON:0000383!1.40e-17!63;UBERON:0001134!4.09e-17!61;UBERON:0002036!4.09e-17!61;UBERON:0003082!4.09e-17!61;UBERON:0004290!6.56e-16!70;UBERON:0000914!1.47e-15!83;UBERON:0002329!1.47e-15!83;UBERON:0003077!1.47e-15!83;UBERON:0003059!1.47e-15!83;UBERON:0007282!1.47e-15!83;UBERON:0009618!1.47e-15!83;UBERON:0007285!1.47e-15!83;UBERON:0000486!1.60e-13!82;UBERON:0004573!5.19e-12!33;UBERON:0004571!5.19e-12!33;UBERON:0005256!2.73e-11!143;UBERON:0002100!3.99e-11!216;UBERON:0001637!2.91e-10!42;UBERON:0003509!2.91e-10!42;UBERON:0004572!2.91e-10!42;UBERON:0000475!2.36e-09!365;UBERON:0000490!8.84e-09!138;UBERON:0004872!1.17e-08!84;UBERON:0000481!1.37e-07!347;UBERON:0003104!2.52e-07!238;UBERON:0009142!2.52e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.05e-14;33!UBERON:0004571;5.05e-14;33!UBERON:0001637;1.40e-10;42!UBERON:0003509;1.40e-10;42!UBERON:0004572;1.40e-10;42!UBERON:0003834;4.86e-10;5!UBERON:0001533;4.86e-10;5!UBERON:0003513;1.87e-09;7!UBERON:0001013;3.88e-07;14!UBERON:0007846;7.54e-07;3!UBERON:0000043;7.54e-07;3!UBERON:0007845;7.54e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,7.16e-16,33;UBERON:0004571,7.16e-16,33;UBERON:0002385,4.53e-14,64;UBERON:0001015,4.53e-14,64;UBERON:0000383,4.53e-14,64;UBERON:0001637,6.73e-14,42;UBERON:0003509,6.73e-14,42;UBERON:0004572,6.73e-14,42;UBERON:0001134,1.18e-13,62;UBERON:0002036,1.18e-13,62;UBERON:0003082,1.18e-13,62;UBERON:0002329,4.06e-13,71;UBERON:0003059,4.06e-13,71;UBERON:0007282,4.06e-13,71;UBERON:0004290,4.06e-13,71;UBERON:0009618,4.06e-13,71;UBERON:0003077,8.07e-13,72;UBERON:0007285,8.07e-13,72;UBERON:0007524,1.57e-12,73;UBERON:0000486,3.38e-12,83;UBERON:0007503,4.23e-12,78;UBERON:0004872,1.14e-11,83;UBERON:0005256,8.61e-11,122;UBERON:0003834,5.42e-10,5;UBERON:0001533,5.42e-10,5;UBERON:0007500,5.81e-10,59;UBERON:0001981,5.81e-10,59;UBERON:0004537,5.81e-10,59;UBERON:0006965,5.81e-10,59;UBERON:0003513,2.25e-09,7;UBERON:0000055,9.66e-09,68;UBERON:0003104,9.69e-08,160;UBERON:0009142,9.69e-08,160;UBERON:0001013,3.00e-07,14;UBERON:0002049,7.84e-07,78;UBERON:0007798,7.84e-07,78;UBERON:0007846,7.96e-07,3;UBERON:0000043,7.96e-07,3;UBERON:0007845,7.96e-07,3;UBERON:0000926,8.31e-07,315;UBERON:0004120,8.31e-07,315;UBERON:0006603,8.31e-07,315 | |||
|phase1_expression=0,0.428201047781966,0.140954404095971,1.0007329835313,0.446961094427288,2.61701557230111,0,0,0,0.491467873003018,0.697801167972428,0.218441372130172,0,0.866364470720326,4.97096063591874,0.672325146451775,0,0.730310090387373,1.46379839637152,0.246242116153576,0.816002764977012,0.626909442956176,0,0.136874425072884,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94826728407911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.36560687762909,0.511450247374121,1.0843174571537,2.00535164254356,2.02785126545153,0,0.973269740605272,0.0945348171640679,0.665188192387692,0.527008714158756,0.0654895377488563,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0.436094052142534,1.98788780678127,0.886413581652058,0.529636723252875,4.87622255272983,2.83734705758686,1.12135520028461,0,1.48000529050296,0.933633106199299,0.269421344139376,0.163461903113459,0,0,0,1.5608003841516,0,3.13842229158782,0.23486899728753,0,0,0.204154171254893,0.491337269247072,1.85986406116378,0,2.22540236350701,0,2.15585442544872,0,0.125118519871964,0,0.877955241761676,0.612975591598039,1.50238058906597,0.226864366320042,0.89694817844431,0.213557388818567,1.48352330811693,0.900273288253207,1.03052529238439,1.54584324027377,0.558350568994769,1.18143432568886,1.85130309806277,0.504867548488229,1.10459878370759,1.61646056818812,0.710019185033229,0.806016785821122,0.169560592310488,0.193260853163297,0,0,0,0,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0.643240938192885,0,1.39310378409594,2.16563844500876,0.118306800039844,0,0,0,0,0.474541238222193,0,0,0.38474715694639,0,1.40241773803446,0.4115740113314,1.47008711385542,0,0,0,0,0,0.343135620597051,0,0,0,0.277765335475589,0,0,1.44331342025273,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0.383382679165211,0,0,0,0,0.12624243342638,0,0,0,0,0.205654985406647,0,0,0,1.30788020649984,0.2933531432838,0.517086863031111,10.7296933755565,4.22651376278,0.797814349754612,0,0.514414748524284,1.41849132023278,0,0.285955987316295,0,0,0.325736184293735,0,0.791951872933429,1.20575750823834,0,1.09970290300263,0,0,0,0,0,0,0.289562613335158,1.84928690295345,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.981531933753119,6.5022167737758,2.17012018959788,3.32753378449291,2.14114786556594,0.630809660135739,0.35142424497814,0,15.9185252839189,8.27784570340039,0,0,1.39013783148933,0.195801157462741,0,0,0,0,1.21251028578504,0,1.5119514666484,0.496215615637554,0.153461973288062,3.36792113319688,1.66580894032411,0.511707249066704,0.482561763430822,2.96836132889982,0.462629081407967,1.77561725313127,0.9033987161519,3.63478100428535,1.16210378459959,0,0.200506470303285,0.0920809889358963,1.14814448164607,2.00300284807389,3.54035920390445,0,0,0,0,0,1.13733384070897,0,0,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0,0,0,0,0,1.6068392984416,0.580024309752732,0.924291702687866,1.99554777143968,0.137836572484531,0.751941714077915,1.74020032697074,0.767039646744908,0.0890320356467374,0.165284915360978,0.192190067365106,0,0.2023155617111,0.929691098594572,2.51849877464512,1.3940745403212,1.23213432070436,1.06461206063404,1.73986598415015,1.66791797193528,1.00187420719394,0.744316738719335,0.316379424718726,0,0,1.71175595213568,2.54562598340749,1.56989728039846,0.719489830333259,0.823611089208164,0.589062011728432,1.41527737101321,7.92551605865041,3.37006764991185,0.48763373908959,4.38684281336312,7.39551027297288,0.9554993798559,1.1312434556297,0,2.75682671773062,4.64407282668854,3.06915619677634,0.578775534266688,3.9353685122798,0,1.54911749049875,1.40847801266121,0.430234056612155,0.0982490410131212,0.35667105148125,1.41904425628239,11.6109199413715,7.57378253807774,0.379473173765715,0.349934720244983,0,0.670302275535787,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0,0,3.12549761487054,0,0.296964680832639,0,0,0,0.111308705022906,0,0,0.996239941255349,0.276283915531148,0,0,0,0.622079175323615,0.0898683511473268,0,0,0.493217028184668,0,0,0.969332746095218,0,0,0,0,2.89999830173917,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0.10893846351899,1.39423744278603,1.07730361905316,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0.141353071433941,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0.728341138602278,0.394584402849391,0,0,0,0,0.103688191397247,0,0.330991955875499,0,0,0,0,0,0.293977192243133,0.522355239482415,1.92199335066233,0.343972064943233,0,0.0730893170861856,0.0821154570532092,0.387956065953678,0,0.451961481561065,0,0,0.0633107959558787,0,0.160317640503067,0.640358984218058,1.79828648623917,0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| ||
|short_description=p@chr12:53494502..53494543,+ | |short_description=p@chr12:53494502..53494543,+ | ||
}} | }} |
Latest revision as of 09:46, 24 July 2015
Short description: | p@chr12:53494502..53494543, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:53494502..53494543, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 4.57e-16 | 43 |
smooth muscle myoblast | 4.57e-16 | 43 |
vascular associated smooth muscle cell | 4.66e-16 | 32 |
muscle precursor cell | 3.79e-15 | 58 |
myoblast | 3.79e-15 | 58 |
multi-potent skeletal muscle stem cell | 3.79e-15 | 58 |
muscle cell | 5.13e-15 | 55 |
electrically responsive cell | 8.74e-13 | 61 |
electrically active cell | 8.74e-13 | 61 |
stromal cell | 2.55e-10 | 28 |
smooth muscle cell of the subclavian artery | 5.42e-10 | 5 |
fibroblast | 1.40e-09 | 76 |
mesodermal cell | 5.62e-08 | 121 |
multi fate stem cell | 4.38e-07 | 427 |
fibrocyte | 7.96e-07 | 3 |
tendon cell | 7.96e-07 | 3 |
somatic stem cell | 9.97e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 4.27e-07 | 3 |
leiomyoma | 4.27e-07 | 3 |