FFCP PHASE1:Hg19::chr14:106725347..106725368,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_AF460666,AF460671,AF460672,AF460678,AF460691,AF460699,AF460700,AF460800,DQ454508,U64467_5end | |association_with_transcript=0bp_to_AF460666,AF460671,AF460672,AF460678,AF460691,AF460699,AF460700,AF460800,DQ454508,U64467_5end | ||
|cluster_id=chr14:106725347..106725368,- | |||
|coexpression_cluster_id=C350 | |coexpression_cluster_id=C350 | ||
|description=CAGE_peak_1_at_AF460666_5end,CAGE_peak_1_at_AF460671_5end,CAGE_peak_1_at_AF460672_5end,CAGE_peak_1_at_AF460678_5end,CAGE_peak_1_at_AF460691_5end,CAGE_peak_1_at_AF460699_5end,CAGE_peak_1_at_AF460700_5end,CAGE_peak_1_at_AF460800_5end,CAGE_peak_1_at_DQ454508_5end,CAGE_peak_1_at_U64467_5end | |description=CAGE_peak_1_at_AF460666_5end,CAGE_peak_1_at_AF460671_5end,CAGE_peak_1_at_AF460672_5end,CAGE_peak_1_at_AF460678_5end,CAGE_peak_1_at_AF460691_5end,CAGE_peak_1_at_AF460699_5end,CAGE_peak_1_at_AF460700_5end,CAGE_peak_1_at_AF460800_5end,CAGE_peak_1_at_DQ454508_5end,CAGE_peak_1_at_U64467_5end | ||
|id=chr14:106725347..106725368,- | |id=chr14:106725347..106725368,- | ||
|ontology_enrichment_celltype=CL:0000236!5.44e-32!14;CL:0000945!4.40e-29!24;CL:0000826!4.40e-29!24;CL:0000838!1.45e-11!52;CL:0000542!2.77e-11!53;CL:0000051!2.77e-11!53 | |ontology_enrichment_celltype=CL:0000236!5.44e-32!14;CL:0000945!4.40e-29!24;CL:0000826!4.40e-29!24;CL:0000838!1.45e-11!52;CL:0000542!2.77e-11!53;CL:0000051!2.77e-11!53 | ||
|ontology_enrichment_celltype_v019=CL:0000236;9.00e-87;13!CL:0000945;1.55e-75;24!CL:0000542;1.05e-23;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.86e-80,14;CL:0000945,1.51e-75,24;CL:0000826,1.51e-75,24;CL:0000838,9.19e-34,52;CL:0000542,4.37e-33,53;CL:0000051,4.37e-33,53;CL:0002087,6.42e-14,115;CL:0002031,3.00e-13,120;CL:0000738,1.95e-11,136;CL:0002032,2.57e-09,161;CL:0000837,2.57e-09,161;CL:0000037,7.80e-09,168;CL:0000988,2.86e-08,177 | |||
|ontology_enrichment_development_v019=CL:0000051;1.05e-23;53!UBERON:0001045;5.30e-11;1!UBERON:0006298;1.27e-10;1!UBERON:0005425;1.27e-10;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.30e-26!115;UBERON:0000178!3.10e-08!15;UBERON:0000179!3.10e-08!15;UBERON:0000463!3.10e-08!15 | |ontology_enrichment_uberon=UBERON:0007023!8.30e-26!115;UBERON:0000178!3.10e-08!15;UBERON:0000179!3.10e-08!15;UBERON:0000463!3.10e-08!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000029;2.66e-11;1!UBERON:0001154;5.30e-11;1!UBERON:0001153;5.30e-11;1!UBERON:0009854;5.30e-11;1!UBERON:0001736;1.27e-10;1!UBERON:0000941;1.27e-10;1!UBERON:0001785;1.27e-10;1!UBERON:0002464;1.27e-10;1!UBERON:0004904;1.27e-10;1!UBERON:0001021;1.27e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000029,2.53e-11,1;UBERON:0001154,5.57e-11,1;UBERON:0001153,5.57e-11,1;UBERON:0001045,5.57e-11,1;UBERON:0001736,9.05e-11,1;UBERON:0006298,9.05e-11,1;UBERON:0000941,1.46e-10,1;UBERON:0001785,1.46e-10,1;UBERON:0002464,1.46e-10,1;UBERON:0004904,1.46e-10,1;UBERON:0001021,1.46e-10,1;UBERON:0003902,1.46e-10,1;UBERON:0005425,1.46e-10,1 | |||
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| ||
|short_description=p1@AF460666,p1@AF460671,p1@AF460672,p1@AF460678,p1@AF460691,p1@AF460699,p1@AF460700,p1@AF460800,p1@DQ454508,p1@U64467 | |short_description=p1@AF460666,p1@AF460671,p1@AF460672,p1@AF460678,p1@AF460691,p1@AF460699,p1@AF460700,p1@AF460800,p1@DQ454508,p1@U64467 | ||
}} | }} |
Latest revision as of 18:44, 24 July 2015
Short description: | p1@AF460666, p1@AF460671, p1@AF460672, p1@AF460678, p1@AF460691, p1@AF460699, p1@AF460700, p1@AF460800, p1@DQ454508, p1@U64467 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AF460666_5end, CAGE_peak_1_at_AF460671_5end, CAGE_peak_1_at_AF460672_5end, CAGE_peak_1_at_AF460678_5end, CAGE_peak_1_at_AF460691_5end, CAGE_peak_1_at_AF460699_5end, CAGE_peak_1_at_AF460700_5end, CAGE_peak_1_at_AF460800_5end, CAGE_peak_1_at_DQ454508_5end, CAGE_peak_1_at_U64467_5end |
Coexpression cluster: | C350_b_lymph_acute_CD19_lymphoma_spleen_B |
Association with transcript: | 0bp_to_AF460666, AF460671, AF460672, AF460678, AF460691, AF460699, AF460700, AF460800, DQ454508, U64467_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.86e-80 | 14 |
lymphocyte of B lineage | 1.51e-75 | 24 |
pro-B cell | 1.51e-75 | 24 |
lymphoid lineage restricted progenitor cell | 9.19e-34 | 52 |
lymphocyte | 4.37e-33 | 53 |
common lymphoid progenitor | 4.37e-33 | 53 |
nongranular leukocyte | 6.42e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 3.00e-13 | 120 |
leukocyte | 1.95e-11 | 136 |
hematopoietic oligopotent progenitor cell | 2.57e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.57e-09 | 161 |
hematopoietic stem cell | 7.80e-09 | 168 |
hematopoietic cell | 2.86e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
lymph node | 2.53e-11 | 1 |
vermiform appendix | 5.57e-11 | 1 |
caecum | 5.57e-11 | 1 |
midgut | 5.57e-11 | 1 |
submandibular gland | 9.05e-11 | 1 |
submandibular gland primordium | 9.05e-11 | 1 |
cranial nerve II | 1.46e-10 | 1 |
cranial nerve | 1.46e-10 | 1 |
nerve trunk | 1.46e-10 | 1 |
nerve connecting eye with brain | 1.46e-10 | 1 |
nerve | 1.46e-10 | 1 |
retinal neural layer | 1.46e-10 | 1 |
presumptive neural retina | 1.46e-10 | 1 |