FFCP PHASE1:Hg19::chr1:36273224..36273255,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:36273224..36273255,+ | |||
|coexpression_cluster_id=C1003 | |coexpression_cluster_id=C1003 | ||
|description=CAGE_peak_at_chr1:36273224..36273255,+ | |description=CAGE_peak_at_chr1:36273224..36273255,+ | ||
|id=chr1:36273224..36273255,+ | |id=chr1:36273224..36273255,+ | ||
|ontology_enrichment_celltype=CL:0000766!8.90e-28!76;CL:0002009!6.51e-26!65;CL:0002057!7.77e-26!42;CL:0002194!7.08e-25!63;CL:0000576!7.08e-25!63;CL:0000040!7.08e-25!63;CL:0000559!7.08e-25!63;CL:0000557!1.30e-24!71;CL:0000839!1.08e-22!70;CL:0000860!2.10e-22!45;CL:0000763!2.49e-12!112;CL:0000049!2.49e-12!112 | |ontology_enrichment_celltype=CL:0000766!8.90e-28!76;CL:0002009!6.51e-26!65;CL:0002057!7.77e-26!42;CL:0002194!7.08e-25!63;CL:0000576!7.08e-25!63;CL:0000040!7.08e-25!63;CL:0000559!7.08e-25!63;CL:0000557!1.30e-24!71;CL:0000839!1.08e-22!70;CL:0000860!2.10e-22!45;CL:0000763!2.49e-12!112;CL:0000049!2.49e-12!112 | ||
|ontology_enrichment_celltype_v019=CL:0000473;3.32e-28;39!CL:0000234;3.32e-28;39!CL:0000860;7.77e-28;33!CL:0002057;7.77e-28;33!CL:0000576;1.45e-24;48!CL:0000766;1.83e-20;69!CL:0000763;9.48e-08;100!CL:0000235;2.96e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.53e-44,48;CL:0000234,3.53e-44,48;CL:0000766,7.00e-44,72;CL:0002009,4.39e-42,61;CL:0002194,1.74e-40,59;CL:0000576,1.74e-40,59;CL:0000040,1.74e-40,59;CL:0000559,1.74e-40,59;CL:0000557,5.78e-39,67;CL:0000860,2.95e-38,42;CL:0002057,2.95e-38,42;CL:0000839,1.79e-36,66;CL:0000763,2.89e-27,108;CL:0000049,2.89e-27,108;CL:0000738,6.45e-19,136;CL:0002087,7.60e-14,115;CL:0002031,2.53e-13,120;CL:0000037,1.65e-11,168;CL:0002032,2.07e-11,161;CL:0000837,2.07e-11,161;CL:0000988,7.80e-10,177;CL:0002393,5.27e-09,9;CL:0002397,5.27e-09,9;CL:0000134,3.09e-07,354;CL:0000235,3.29e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;1.43e-27;42!CL:0000049;3.04e-08;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.20e-21!102;UBERON:0003061!1.20e-21!102;UBERON:0002371!1.77e-20!80;UBERON:0002193!3.60e-20!112;UBERON:0001474!3.43e-18!86;UBERON:0004765!1.73e-15!101;UBERON:0001434!1.73e-15!101;UBERON:0002405!6.63e-14!115;UBERON:0000467!6.64e-13!625;UBERON:0000480!1.17e-12!626;UBERON:0000468!6.07e-12!659;UBERON:0003081!3.51e-11!216;UBERON:0002204!1.57e-10!167;UBERON:0007023!1.43e-09!115;UBERON:0000062!1.94e-09!511;UBERON:0001049!1.04e-08!57;UBERON:0005068!1.04e-08!57;UBERON:0006241!1.04e-08!57;UBERON:0007135!1.04e-08!57;UBERON:0002780!4.33e-08!41;UBERON:0001890!4.33e-08!41;UBERON:0006240!4.33e-08!41;UBERON:0000922!4.84e-08!612;UBERON:0000923!1.47e-07!604;UBERON:0005291!1.47e-07!604;UBERON:0006598!1.47e-07!604;UBERON:0002532!1.47e-07!604;UBERON:0003080!1.60e-07!42;UBERON:0002050!2.23e-07!605;UBERON:0005423!2.23e-07!605;UBERON:0002616!4.14e-07!59;UBERON:0001893!7.64e-07!34 | |ontology_enrichment_uberon=UBERON:0002390!1.20e-21!102;UBERON:0003061!1.20e-21!102;UBERON:0002371!1.77e-20!80;UBERON:0002193!3.60e-20!112;UBERON:0001474!3.43e-18!86;UBERON:0004765!1.73e-15!101;UBERON:0001434!1.73e-15!101;UBERON:0002405!6.63e-14!115;UBERON:0000467!6.64e-13!625;UBERON:0000480!1.17e-12!626;UBERON:0000468!6.07e-12!659;UBERON:0003081!3.51e-11!216;UBERON:0002204!1.57e-10!167;UBERON:0007023!1.43e-09!115;UBERON:0000062!1.94e-09!511;UBERON:0001049!1.04e-08!57;UBERON:0005068!1.04e-08!57;UBERON:0006241!1.04e-08!57;UBERON:0007135!1.04e-08!57;UBERON:0002780!4.33e-08!41;UBERON:0001890!4.33e-08!41;UBERON:0006240!4.33e-08!41;UBERON:0000922!4.84e-08!612;UBERON:0000923!1.47e-07!604;UBERON:0005291!1.47e-07!604;UBERON:0006598!1.47e-07!604;UBERON:0002532!1.47e-07!604;UBERON:0003080!1.60e-07!42;UBERON:0002050!2.23e-07!605;UBERON:0005423!2.23e-07!605;UBERON:0002616!4.14e-07!59;UBERON:0001893!7.64e-07!34 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.87e-08;15!UBERON:0000179;5.87e-08;15!UBERON:0000463;5.87e-08;15 | |||
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|phase1_expression=1.81678379270557,1.07050261945492,2.11431606143957,2.00146596706261,0.446961094427288,0.872338524100369,2.53299878168311,0,0.522371256399677,0.737201809504527,0.697801167972428,0,0.263766978228454,0.37129905888014,0.331397375727916,0,0,2.19093027116212,0.487932798790507,0.123121058076788,0.408001382488506,0,0.572471974262113,0.273748850145768,0.376627918784408,0,0.164201178899891,0.0787107813136792,3.54027849164014,2.68680578668049,2.16742572642506,0,0.6024118375565,0,0,0,0.293600439334847,5.53995408531877,3.40925560699241,3.03815219002193,13.6588439286354,14.2513213048351,11.5909005435384,7.26991193897824,11.7141542543531,10.1885305698883,7.67015821788759,6.98985409637104,5.26500830521676,4.89077066947656,3.07392847834921,4.7296445977717,10.6871161028352,7.74581620300591,1.35426486594342,8.84738995850242,5.45812300115692,5.16864014223695,3.67300670845083,3.53021929783703,3.19668562899521,2.96866170168044,3.78980949481101,4.26224750532694,5.80418477257168,2.26954089876456,2.4912889959823,6.78371396193207,4.69334626578181,3.9093992046921,3.63239701580021,2.20966581592539,2.84816148696796,3.38008458099107,3.61427309940574,2.51590374610051,7.75067554910816,8.10955221344134,10.6078887220073,4.27519115611873,4.17725022118089,4.20127553658658,0,0.546138611262131,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0.451725357233318,0.255973222308837,1.24930726552346,1.18388626022008,0,0,0,0,0,0,0.12786256184353,1.44575660953827,0,0.724232594804119,3.1811437882044,2.43317435151318,0.283604451492204,0.221729397462564,0.527008714158756,0.982343066232845,0,0.370784442784429,0.97364218096405,2.61194605948901,2.52620124985844,0,0.571994910780128,0,0.39752481473341,0,0.694281003215189,0.56530794192401,0.838998872419812,0.275118041940067,0,1.03366703667732,0.71153252537342,0.33472061276467,0.805658634218294,1.52054421143703,0,0.735326160691737,0,0.446498641420399,0.22452937262617,0.337834441449967,0,0,0.366403487860815,7.9068250461638,0,0,0,0.12663051166458,2.1185468930115,2.0078563452417,0.354668382198357,0.560677600142307,3.20246987189115,0.24666754841716,0.933633106199299,0.67355336034844,0.490385709340376,0,0,0.234321431833797,0.624320153660641,0,0.896692083310806,0.469737994575059,0.161872944368132,0.421352420106746,0.204154171254893,0.122834317311768,0.309977343527296,1.18800285728205,0,0,0,0.336672227908132,0.250237039743928,0.277064115484183,0,0,0.45071417671979,0.226864366320042,1.79389635688862,0.427114777637135,1.27159140695737,2.70081986475962,1.13357782162283,3.09168648054755,1.30281799432113,2.86919764810153,1.46155507741798,2.01947019395292,0.644349290496095,0,2.13005755509969,0.906768884048762,0,1.15956511897978,1.36373060295417,0.860413786167011,1.34171076742555,1.06023814657188,0.929551542956147,0.621966330092223,0.756962552626885,0,0,0.643240938192885,1.38134921352481,0,0.721879481669586,0.354920400119532,0.337169380156203,0,0.661763836394364,0,0,0,0.392442930250692,0,0,0,0.4115740113314,1.47008711385542,0,0,1.18157981336281,0,0.122988438543114,0,0.219500570817251,1.1240175325762,0,0.462942225792648,0,0,0,0.231860809950154,0.352226082707465,1.29929802984966,0,0.761016608938393,0,0,13.2957183287195,3.27605971194933,4.45893486866185,0,1.6798212819886,1.84307626415102,0.0895585227028483,0.290633938513962,0,1.47798971368783,1.40877494421162,0.621984346622316,0.288239906833923,0.37872730027914,3.11139682031628,1.90994212779139,2.34434894420094,0,1.64523988325318,2.40274446275134,1.42913216315289,0.336393253036082,1.30788020649984,0.4400297149257,1.03417372606222,0,0.845302752556,1.32969058292435,1.04007436911366,0.257207374262142,0,0.266422179016099,0.285955987316295,0,0,0.977208552881205,0,0.791951872933429,0.904318131178758,1.74306691720059,0.799783929456456,6.08118903205952,4.52031382288914,8.43335757932127,0.239624855491583,0,0,1.01346914667305,0.205476322550383,1.07436577943937,0,0.197030760201927,0,0.385029108839245,1.27047312111232,1.30139853857622,0,0.670065061337395,0,8.23907726341901,11.966458368161,16.9910360508775,0.24538298343828,0,0,0.623912584592421,0.535286966391485,0.630809660135739,0.234282829985426,0.601892199455438,0,1.03473071292505,0,0.368738337083406,0.60818530127658,0,0.343143423810856,2.06768026122887,1.50999940573032,1.17400313583789,0.303127571446259,0,0,0.992431231275107,6.29194090481056,1.12264037773229,1.40953064181271,3.07024349440022,0.482561763430822,1.48418066444991,0.925258162815933,0.532685175939381,0.574890092096664,0.519254429183621,0.348631135379878,0.120859449591622,1.20303882181971,0.0920809889358963,0.114814448164607,0.910455840033585,0.262248829918848,0.902399225814824,2.15642943892361,0,0,0.633309773357254,0,0.340187410553031,0.647747748306418,0,0,0.501689773854853,0,1.66215201785745,0.447749509444357,0,0,1.02580050046556,1.31205858279882,1.30151357865721,1.13345112812495,0.366277859273374,0.82509499920588,0.574265537996172,0,0,0.193341436584244,0.616194468458578,0.15350367472613,0,0.4296809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| ||
|short_description=p@chr1:36273224..36273255,+ | |short_description=p@chr1:36273224..36273255,+ | ||
}} | }} |
Latest revision as of 07:42, 28 July 2015
Short description: | p@chr1:36273224..36273255, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:36273224..36273255, + |
Coexpression cluster: | C1003_CD14_Whole_Neutrophils_Macrophage_Eosinophils_blood_CD14CD16 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.53e-44 | 48 |
phagocyte | 3.53e-44 | 48 |
myeloid leukocyte | 7.00e-44 | 72 |
macrophage dendritic cell progenitor | 4.39e-42 | 61 |
monopoietic cell | 1.74e-40 | 59 |
monocyte | 1.74e-40 | 59 |
monoblast | 1.74e-40 | 59 |
promonocyte | 1.74e-40 | 59 |
granulocyte monocyte progenitor cell | 5.78e-39 | 67 |
classical monocyte | 2.95e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.95e-38 | 42 |
myeloid lineage restricted progenitor cell | 1.79e-36 | 66 |
myeloid cell | 2.89e-27 | 108 |
common myeloid progenitor | 2.89e-27 | 108 |
leukocyte | 6.45e-19 | 136 |
nongranular leukocyte | 7.60e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 2.53e-13 | 120 |
hematopoietic stem cell | 1.65e-11 | 168 |
hematopoietic oligopotent progenitor cell | 2.07e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.07e-11 | 161 |
hematopoietic cell | 7.80e-10 | 177 |
intermediate monocyte | 5.27e-09 | 9 |
CD14-positive, CD16-positive monocyte | 5.27e-09 | 9 |
mesenchymal cell | 3.09e-07 | 354 |
macrophage | 3.29e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.87e-37 | 98 |
blood island | 4.87e-37 | 98 |
bone marrow | 1.47e-33 | 76 |
hemolymphoid system | 9.47e-33 | 108 |
bone element | 2.30e-29 | 82 |
skeletal element | 7.63e-27 | 90 |
immune system | 8.45e-26 | 93 |
skeletal system | 1.02e-22 | 100 |
lateral plate mesoderm | 2.86e-15 | 203 |
musculoskeletal system | 4.49e-11 | 167 |
mesoderm | 3.83e-10 | 315 |
mesoderm-derived structure | 3.83e-10 | 315 |
presumptive mesoderm | 3.83e-10 | 315 |
blood | 6.23e-08 | 15 |
haemolymphatic fluid | 6.23e-08 | 15 |
organism substance | 6.23e-08 | 15 |
neural tube | 6.74e-07 | 56 |
neural rod | 6.74e-07 | 56 |
future spinal cord | 6.74e-07 | 56 |
neural keel | 6.74e-07 | 56 |