FFCP PHASE1:Hg19::chr3:189607187..189607198,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:189607187..189607198,+ | |||
|coexpression_cluster_id=C2735 | |||
|description=CAGE_peak_at_chr3:189607187..189607198,+ | |description=CAGE_peak_at_chr3:189607187..189607198,+ | ||
|id=chr3:189607187..189607198,+ | |id=chr3:189607187..189607198,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.83e-21!43;CL:0000223!4.56e-20!59;CL:0002251!5.25e-14!21;CL:0000066!1.19e-10!254;CL:0002159!8.15e-09!13;CL:0000622!1.28e-08!5;CL:0002368!2.47e-08!13;CL:0002621!9.51e-08!3;CL:0000154!3.75e-07!6;CL:0000076!4.67e-07!62 | |ontology_enrichment_celltype=CL:0002076!1.83e-21!43;CL:0000223!4.56e-20!59;CL:0002251!5.25e-14!21;CL:0000066!1.19e-10!254;CL:0002159!8.15e-09!13;CL:0000622!1.28e-08!5;CL:0002368!2.47e-08!13;CL:0002621!9.51e-08!3;CL:0000154!3.75e-07!6;CL:0000076!4.67e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002159;2.71e-25;14!CL:0000622;2.04e-24;5!CL:0000154;2.16e-20;6!CL:0002076;3.95e-19;42!CL:0002251;1.71e-17;20!CL:0000317;1.37e-16;2!CL:1000448;1.37e-16;2!CL:0002308;1.37e-16;2!CL:0002140;1.37e-16;2!CL:0000150;1.15e-13;9!CL:0000362;1.15e-13;9!CL:0000240;1.34e-11;6!CL:0000311;1.34e-11;6!CL:0000079;1.34e-11;6!CL:0000237;1.34e-11;6!CL:0002231;2.66e-11;3!CL:0002077;3.48e-11;34!CL:0002166;9.33e-11;3!CL:0002623;9.33e-11;3!CL:0002336;1.09e-08;1!CL:0002261;1.09e-08;1!CL:0002252;1.09e-08;1!CL:0002170;1.09e-08;1!CL:0000244;2.77e-08;4!CL:0000731;2.77e-08;4!CL:0000312;8.65e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,2.78e-25,14;CL:0000622,2.95e-24,5;CL:0002076,2.35e-23,42;CL:0000154,2.93e-20,6;CL:0002251,1.83e-17,20;CL:0000317,1.27e-16,2;CL:1000448,1.27e-16,2;CL:0002308,1.27e-16,2;CL:0002140,1.27e-16,2;CL:0000223,2.52e-16,58;CL:0000362,7.04e-14,9;CL:0000150,1.40e-13,9;CL:0002077,7.32e-13,34;CL:0000066,9.40e-13,253;CL:0000240,5.88e-12,6;CL:0000311,5.88e-12,6;CL:0000079,5.88e-12,6;CL:0000237,5.88e-12,6;CL:0000036,5.88e-12,6;CL:0000357,5.88e-12,6;CL:0000114,5.88e-12,6;CL:0002231,3.11e-11,3;CL:0002166,1.32e-10,3;CL:0002623,1.32e-10,3;CL:0000076,2.95e-10,63;CL:0002336,5.70e-09,1;CL:0002261,5.70e-09,1;CL:0002170,5.70e-09,1;CL:0002252,1.42e-08,1;CL:0000244,2.07e-08,4;CL:0000731,2.07e-08,4;CL:0002321,4.38e-08,250;CL:0000312,5.73e-07,5;CL:0000221,9.21e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000223;1.08e-11;58!CL:0000357;1.34e-11;6!CL:0000114;1.34e-11;6 | |||
|ontology_enrichment_disease=DOID:1749!1.75e-18!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;4.18e-09;1!DOID:3149;4.18e-09;1!DOID:1749;7.60e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,3.58e-09,1;DOID:3149,3.58e-09,1;DOID:1749,1.01e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000161!2.77e-17!35;UBERON:0000166!7.68e-14!21;UBERON:0004119!2.54e-13!169;UBERON:0000925!2.54e-13!169;UBERON:0006595!2.54e-13!169;UBERON:0003729!1.11e-12!5;UBERON:0001004!3.53e-12!72;UBERON:0000165!1.50e-11!28;UBERON:0000930!1.50e-11!28;UBERON:0000974!1.03e-10!10;UBERON:0003343!2.28e-10!4;UBERON:0004785!2.28e-10!4;UBERON:0003102!4.17e-09!95;UBERON:0000344!7.46e-09!12;UBERON:0001007!1.90e-08!155;UBERON:0001555!1.90e-08!155;UBERON:0007026!1.90e-08!155;UBERON:0000365!4.80e-08!5;UBERON:0001949!9.51e-08!3;UBERON:0006947!2.15e-07!3;UBERON:0004054!2.15e-07!3 | |ontology_enrichment_uberon=UBERON:0000161!2.77e-17!35;UBERON:0000166!7.68e-14!21;UBERON:0004119!2.54e-13!169;UBERON:0000925!2.54e-13!169;UBERON:0006595!2.54e-13!169;UBERON:0003729!1.11e-12!5;UBERON:0001004!3.53e-12!72;UBERON:0000165!1.50e-11!28;UBERON:0000930!1.50e-11!28;UBERON:0000974!1.03e-10!10;UBERON:0003343!2.28e-10!4;UBERON:0004785!2.28e-10!4;UBERON:0003102!4.17e-09!95;UBERON:0000344!7.46e-09!12;UBERON:0001007!1.90e-08!155;UBERON:0001555!1.90e-08!155;UBERON:0007026!1.90e-08!155;UBERON:0000365!4.80e-08!5;UBERON:0001949!9.51e-08!3;UBERON:0006947!2.15e-07!3;UBERON:0004054!2.15e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002419;1.37e-16;2!UBERON:0007771;1.37e-16;2!UBERON:0003297;1.37e-16;2!UBERON:0001821;1.37e-16;2!UBERON:0003487;1.37e-16;2!UBERON:0001820;1.37e-16;2!UBERON:0000165;2.85e-12;28!UBERON:0000161;9.47e-10;19!UBERON:0000166;9.47e-10;19!UBERON:0003729;1.62e-09;13!UBERON:0003343;9.37e-09;4!UBERON:0004785;9.37e-09;4!UBERON:0001708;2.77e-08;4!UBERON:0008895;2.77e-08;4!UBERON:0001003;2.96e-08;15!UBERON:0007376;2.96e-08;15!UBERON:0011159;8.65e-07;5!UBERON:0000365;8.65e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.14e-18,99;UBERON:0002419,1.27e-16,2;UBERON:0007771,1.27e-16,2;UBERON:0003297,1.27e-16,2;UBERON:0001821,1.27e-16,2;UBERON:0003487,1.27e-16,2;UBERON:0001820,1.27e-16,2;UBERON:0005089,1.27e-16,2;UBERON:0005088,1.27e-16,2;UBERON:0000161,2.82e-12,36;UBERON:0000165,7.22e-12,29;UBERON:0000930,7.22e-12,29;UBERON:0000166,9.19e-12,22;UBERON:0000033,1.53e-11,56;UBERON:0000153,2.88e-10,62;UBERON:0007811,2.88e-10,62;UBERON:0003729,1.36e-09,13;UBERON:0003343,9.39e-09,4;UBERON:0004785,9.39e-09,4;UBERON:0001444,1.27e-08,49;UBERON:0001003,2.23e-08,15;UBERON:0007376,2.23e-08,15;UBERON:0007383,2.23e-08,15;UBERON:0001708,3.59e-08,4;UBERON:0008895,3.59e-08,4;UBERON:0004119,1.38e-07,160;UBERON:0000925,1.38e-07,160;UBERON:0006595,1.38e-07,160;UBERON:0000365,6.85e-07,5;UBERON:0001004,9.29e-07,74 | |||
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|short_description=p@chr3:189607187..189607198,+ | |short_description=p@chr3:189607187..189607198,+ | ||
}} | }} |
Latest revision as of 19:24, 29 July 2015
Short description: | p@chr3:189607187..189607198, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:189607187..189607198, + |
Coexpression cluster: | C2735_oral_Sebocyte_Keratinocyte_Small_cervical_Prostate_keratoacanthoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
surface structure | 1.14e-18 | 99 |
skin gland | 1.27e-16 | 2 |
epidermis gland | 1.27e-16 | 2 |
gland of integumental system | 1.27e-16 | 2 |
sebaceous gland | 1.27e-16 | 2 |
skin sebaceous gland | 1.27e-16 | 2 |
sweat gland | 1.27e-16 | 2 |
sweat gland placode | 1.27e-16 | 2 |
sebaceous gland placode | 1.27e-16 | 2 |
orifice | 2.82e-12 | 36 |
mouth | 7.22e-12 | 29 |
stomodeum | 7.22e-12 | 29 |
oral opening | 9.19e-12 | 22 |
head | 1.53e-11 | 56 |
anterior region of body | 2.88e-10 | 62 |
craniocervical region | 2.88e-10 | 62 |
mouth mucosa | 1.36e-09 | 13 |
mucosa of oral region | 9.39e-09 | 4 |
respiratory system mucosa | 9.39e-09 | 4 |
subdivision of head | 1.27e-08 | 49 |
skin epidermis | 2.23e-08 | 15 |
outer epithelium | 2.23e-08 | 15 |
enveloping layer of ectoderm | 2.23e-08 | 15 |
jaw skeleton | 3.59e-08 | 4 |
splanchnocranium | 3.59e-08 | 4 |
endoderm-derived structure | 1.38e-07 | 160 |
endoderm | 1.38e-07 | 160 |
presumptive endoderm | 1.38e-07 | 160 |
urothelium | 6.85e-07 | 5 |
respiratory system | 9.29e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 3.58e-09 | 1 |
keratoacanthoma | 3.58e-09 | 1 |
squamous cell carcinoma | 1.01e-08 | 14 |