FFCP PHASE1:Hg19::chr4:15937715..15937733,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:15937715..15937733,-
|short_description=p@chr4:15937715..15937733,-
|description=CAGE_peak_at_chr4:15937715..15937733,-
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:15937715..15937733,- | |||
|coexpression_cluster_id=C4385 | |||
|description=CAGE_peak_at_chr4:15937715..15937733,- | |||
|id=chr4:15937715..15937733,- | |||
|ontology_enrichment_celltype=CL:0000066!2.88e-28!254;CL:0002159!8.17e-24!13;CL:0002076!7.22e-23!43;CL:0000223!2.63e-15!59;CL:0002368!5.72e-15!13;CL:0000244!1.90e-13!4;CL:0000731!1.90e-13!4;CL:0002328!2.28e-11!3;CL:0002621!4.75e-11!3;CL:0000076!9.41e-11!62;CL:0000362!1.22e-10!8;CL:0002166!2.82e-10!3;CL:0002077!8.99e-10!33;CL:0002202!1.48e-09!9;CL:0002632!1.48e-09!9;CL:0000240!1.49e-09!6;CL:0000311!1.49e-09!6;CL:0000079!1.49e-09!6;CL:0000237!1.49e-09!6;CL:0000036!1.49e-09!6;CL:0000357!1.49e-09!6;CL:0000114!1.49e-09!6;CL:0002251!6.94e-09!21;CL:0000317!1.46e-07!2;CL:1000448!1.46e-07!2;CL:0002308!1.46e-07!2;CL:0002140!1.46e-07!2;CL:0000575!1.67e-07!2;CL:0000312!5.58e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002328;6.65e-31;3!CL:0002621;2.47e-30;3!CL:0002202;7.78e-28;9!CL:0002632;7.78e-28;9!CL:0002159;2.34e-25;14!CL:0002368;2.85e-19;13!CL:0000312;4.40e-19;5!CL:0002076;2.59e-18;42!CL:0000362;2.74e-18;9!CL:0000240;5.25e-16;6!CL:0000311;5.25e-16;6!CL:0000079;5.25e-16;6!CL:0000237;5.25e-16;6!CL:0000307;2.59e-14;3!CL:0000244;8.96e-11;4!CL:0000731;8.96e-11;4!CL:0002077;5.06e-10;34!CL:0002251;3.17e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002328,2.95e-31,3;CL:0002621,2.74e-30,3;CL:0002202,6.98e-28,9;CL:0002632,6.98e-28,9;CL:0002076,3.36e-27,42;CL:0002159,2.34e-25,14;CL:0002368,2.64e-19,13;CL:0000223,2.90e-19,58;CL:0000312,3.90e-19,5;CL:0000362,3.00e-18,9;CL:0000240,4.75e-16,6;CL:0000311,4.75e-16,6;CL:0000079,4.75e-16,6;CL:0000237,4.75e-16,6;CL:0000036,4.75e-16,6;CL:0000357,4.75e-16,6;CL:0000114,4.75e-16,6;CL:0000068,3.87e-14,3;CL:0000069,3.87e-14,3;CL:0000307,3.87e-14,3;CL:0000377,3.87e-14,3;CL:0000066,1.24e-11,253;CL:0000244,8.96e-11,4;CL:0000731,8.96e-11,4;CL:0002077,3.18e-10,34;CL:0002321,5.97e-09,250;CL:0002251,3.17e-08,20 | |||
|ontology_enrichment_development_v019=CL:0000357;5.25e-16;6!CL:0000114;5.25e-16;6!CL:0000377;2.59e-14;3!CL:0000223;3.04e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!2.63e-16!14;DOID:305!2.06e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004815;6.65e-31;3!UBERON:0002031;6.65e-31;3!UBERON:0001949;2.47e-30;3!UBERON:0000486;1.74e-20;12!UBERON:0002185;8.07e-19;5!UBERON:0007196;1.07e-16;15!UBERON:0001558;1.07e-16;15!UBERON:0004807;5.25e-16;22!UBERON:0010371;6.46e-15;31!UBERON:0005911;6.51e-15;36!UBERON:0000485;1.29e-13;7!UBERON:0003929;2.24e-13;7!UBERON:0003729;1.49e-12;13!UBERON:0003350;8.93e-12;8!UBERON:0001828;8.93e-12;8!UBERON:0001003;4.57e-11;15!UBERON:0007376;4.57e-11;15!UBERON:0000165;8.46e-09;28!UBERON:0000365;8.50e-09;5!UBERON:0000161;1.19e-08;19!UBERON:0000166;1.19e-08;19!UBERON:0000344;3.17e-08;20!UBERON:0005178;1.78e-07;34!UBERON:0002224;1.78e-07;34!UBERON:0005910;1.80e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.95e-31,3;UBERON:0002031,2.95e-31,3;UBERON:0001949,2.74e-30,3;UBERON:0002185,4.98e-19,5;UBERON:0007196,1.00e-16,15;UBERON:0001558,1.00e-16,15;UBERON:0003102,1.12e-12,99;UBERON:0004807,1.48e-12,28;UBERON:0003729,1.49e-12,13;UBERON:0001004,4.42e-12,74;UBERON:0003350,9.27e-12,8;UBERON:0001828,9.27e-12,8;UBERON:0000166,3.33e-11,22;UBERON:0001003,4.81e-11,15;UBERON:0007376,4.81e-11,15;UBERON:0007383,4.81e-11,15;UBERON:0000485,7.90e-11,9;UBERON:0000161,1.48e-09,36;UBERON:0000365,8.50e-09,5;UBERON:0005911,1.11e-08,82;UBERON:0000165,1.81e-08,29;UBERON:0000930,1.81e-08,29;UBERON:0004119,1.93e-08,160;UBERON:0000925,1.93e-08,160;UBERON:0006595,1.93e-08,160;UBERON:0000344,3.17e-08,20;UBERON:0000033,5.52e-08,56;UBERON:0005910,1.80e-07,6;UBERON:0005178,2.62e-07,34;UBERON:0002224,2.62e-07,34;UBERON:0000072,2.90e-07,47;UBERON:0000153,3.83e-07,62;UBERON:0007811,3.83e-07,62;UBERON:0005181,4.28e-07,35;UBERON:0001444,7.16e-07,49 | |||
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| ||
|short_description=p@chr4:15937715..15937733,- | |||
}} | }} |
Latest revision as of 02:47, 30 July 2015
Short description: | p@chr4:15937715..15937733, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:15937715..15937733, - |
Coexpression cluster: | C4385_Keratinocyte_Tracheal_Bronchial_Mallassezderived_Gingival_Sebocyte_oral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 2.95e-31 | 3 |
gingival epithelial cell | 2.74e-30 | 3 |
epithelial cell of tracheobronchial tree | 6.98e-28 | 9 |
epithelial cell of lower respiratory tract | 6.98e-28 | 9 |
endo-epithelial cell | 3.36e-27 | 42 |
general ecto-epithelial cell | 2.34e-25 | 14 |
respiratory epithelial cell | 2.64e-19 | 13 |
endodermal cell | 2.90e-19 | 58 |
keratinocyte | 3.90e-19 | 5 |
epidermal cell | 3.00e-18 | 9 |
stratified squamous epithelial cell | 4.75e-16 | 6 |
keratin accumulating cell | 4.75e-16 | 6 |
stratified epithelial cell | 4.75e-16 | 6 |
keratinizing barrier epithelial cell | 4.75e-16 | 6 |
epithelial fate stem cell | 4.75e-16 | 6 |
stratified epithelial stem cell | 4.75e-16 | 6 |
surface ectodermal cell | 4.75e-16 | 6 |
duct epithelial cell | 3.87e-14 | 3 |
branched duct epithelial cell | 3.87e-14 | 3 |
tracheal epithelial cell | 3.87e-14 | 3 |
tracheoblast | 3.87e-14 | 3 |
epithelial cell | 1.24e-11 | 253 |
transitional epithelial cell | 8.96e-11 | 4 |
urothelial cell | 8.96e-11 | 4 |
ecto-epithelial cell | 3.18e-10 | 34 |
embryonic cell | 5.97e-09 | 250 |
epithelial cell of alimentary canal | 3.17e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.95e-31 | 3 |
epithelium of bronchus | 2.95e-31 | 3 |
gingival epithelium | 2.74e-30 | 3 |
bronchus | 4.98e-19 | 5 |
tracheobronchial tree | 1.00e-16 | 15 |
lower respiratory tract | 1.00e-16 | 15 |
surface structure | 1.12e-12 | 99 |
respiratory system epithelium | 1.48e-12 | 28 |
mouth mucosa | 1.49e-12 | 13 |
respiratory system | 4.42e-12 | 74 |
epithelium of mucosa | 9.27e-12 | 8 |
gingiva | 9.27e-12 | 8 |
oral opening | 3.33e-11 | 22 |
skin epidermis | 4.81e-11 | 15 |
outer epithelium | 4.81e-11 | 15 |
enveloping layer of ectoderm | 4.81e-11 | 15 |
simple columnar epithelium | 7.90e-11 | 9 |
orifice | 1.48e-09 | 36 |
urothelium | 8.50e-09 | 5 |
endo-epithelium | 1.11e-08 | 82 |
mouth | 1.81e-08 | 29 |
stomodeum | 1.81e-08 | 29 |
endoderm-derived structure | 1.93e-08 | 160 |
endoderm | 1.93e-08 | 160 |
presumptive endoderm | 1.93e-08 | 160 |
mucosa | 3.17e-08 | 20 |
head | 5.52e-08 | 56 |
transitional epithelium | 1.80e-07 | 6 |
thoracic cavity element | 2.62e-07 | 34 |
thoracic cavity | 2.62e-07 | 34 |
segment of respiratory tract | 2.90e-07 | 47 |
anterior region of body | 3.83e-07 | 62 |
craniocervical region | 3.83e-07 | 62 |
thoracic segment organ | 4.28e-07 | 35 |
subdivision of head | 7.16e-07 | 49 |