FFCP PHASE1:Hg19::chr5:179263474..179263514,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:179263474..179263514,+
|short_description=p@chr5:179263474..179263514,+
|description=CAGE_peak_at_chr5:179263474..179263514,+
|association_with_transcript=...") |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:179263474..179263514,+ | |||
|coexpression_cluster_id=C4489 | |||
|description=CAGE_peak_at_chr5:179263474..179263514,+ | |||
|id=chr5:179263474..179263514,+ | |||
|ontology_enrichment_celltype=CL:0000548!7.41e-10!679;CL:0000004!7.41e-10!679;CL:0000255!7.41e-10!679;CL:0000012!2.14e-09!682;CL:0002057!2.28e-08!42;CL:0000144!3.16e-08!625;CL:0000860!4.61e-08!45;CL:0000839!1.25e-07!70;CL:0000063!1.33e-07!578;CL:0002194!2.68e-07!63;CL:0000576!2.68e-07!63;CL:0000040!2.68e-07!63;CL:0000559!2.68e-07!63;CL:0000077!5.88e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.92e-16;33!CL:0002057;6.92e-16;33!CL:0000473;1.29e-14;39!CL:0000234;1.29e-14;39!CL:0000077;7.01e-08;19!CL:0000576;1.24e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.46e-13,48;CL:0000234,1.46e-13,48;CL:0000860,1.45e-11,42;CL:0002057,1.45e-11,42;CL:0000839,2.33e-11,66;CL:0002194,4.21e-11,59;CL:0000576,4.21e-11,59;CL:0000040,4.21e-11,59;CL:0000559,4.21e-11,59;CL:0000557,5.55e-11,67;CL:0002009,2.56e-10,61;CL:0000766,4.83e-10,72;CL:0000213,1.13e-09,58;CL:0000215,1.13e-09,58;CL:0000077,5.40e-08,19;CL:0000048,7.07e-08,427;CL:0000723,7.23e-08,433;CL:0000034,3.07e-07,441;CL:0000222,5.40e-07,121;CL:0002320,5.66e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.17e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!7.75e-09!448;UBERON:0004120!7.75e-09!448;UBERON:0006603!7.75e-09!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,3.03e-12,315;UBERON:0004120,3.03e-12,315;UBERON:0006603,3.03e-12,315;UBERON:0002371,4.88e-10,76;UBERON:0002405,3.41e-09,93;UBERON:0001474,1.04e-08,82;UBERON:0004765,1.19e-08,90;UBERON:0003081,2.39e-08,203;UBERON:0002204,3.81e-08,167;UBERON:0001434,6.54e-08,100 | |||
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| ||
|short_description=p@chr5:179263474..179263514,+ | |||
}} | }} |
Latest revision as of 13:54, 30 July 2015
Short description: | p@chr5:179263474..179263514, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:179263474..179263514, + |
Coexpression cluster: | C4489_Osteoblast_CD14_leiomyoma_Monocytederived_mesothelioma_Prostate_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.46e-13 | 48 |
phagocyte | 1.46e-13 | 48 |
classical monocyte | 1.45e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.45e-11 | 42 |
myeloid lineage restricted progenitor cell | 2.33e-11 | 66 |
monopoietic cell | 4.21e-11 | 59 |
monocyte | 4.21e-11 | 59 |
monoblast | 4.21e-11 | 59 |
promonocyte | 4.21e-11 | 59 |
granulocyte monocyte progenitor cell | 5.55e-11 | 67 |
macrophage dendritic cell progenitor | 2.56e-10 | 61 |
myeloid leukocyte | 4.83e-10 | 72 |
lining cell | 1.13e-09 | 58 |
barrier cell | 1.13e-09 | 58 |
mesothelial cell | 5.40e-08 | 19 |
multi fate stem cell | 7.07e-08 | 427 |
somatic stem cell | 7.23e-08 | 433 |
stem cell | 3.07e-07 | 441 |
mesodermal cell | 5.40e-07 | 121 |
connective tissue cell | 5.66e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 3.03e-12 | 315 |
mesoderm-derived structure | 3.03e-12 | 315 |
presumptive mesoderm | 3.03e-12 | 315 |
bone marrow | 4.88e-10 | 76 |
immune system | 3.41e-09 | 93 |
bone element | 1.04e-08 | 82 |
skeletal element | 1.19e-08 | 90 |
lateral plate mesoderm | 2.39e-08 | 203 |
musculoskeletal system | 3.81e-08 | 167 |
skeletal system | 6.54e-08 | 100 |