FFCP PHASE1:Mm9::chr19:46574691..46574720,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:46574691..46574720,+
|short_description=p@chr19:46574691..46574720,+
|description=CAGE_peak_at_chr19:46574691..46574720,+
|association_with_transcript=NA
...") |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=108 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:46574691..46574720,+ | |||
|description=CAGE_peak_at_chr19:46574691..46574720,+ | |||
|id=chr19:46574691..46574720,+ | |||
|ontology_enrichment_celltype=CL:0002319!7.95e-10!43;CL:0000221!2.90e-09!44;CL:0000133!2.90e-09!44;CL:0000117!1.19e-08!23;CL:0000337!1.19e-08!23;CL:0000055!1.73e-08!50;CL:0002321!4.44e-07!70;CL:0000220!4.44e-07!70;CL:0000540!6.14e-07!33;CL:0000047!6.14e-07!33;CL:0000031!6.14e-07!33;CL:0000404!6.14e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,7.47e-10,43;CL:0000221,2.74e-09,44;CL:0000133,2.74e-09,44;CL:0000117,1.13e-08,23;CL:0000337,1.13e-08,23;CL:0002321,3.82e-07,70;CL:0000540,5.90e-07,33;CL:0000047,5.90e-07,33;CL:0000031,5.90e-07,33;CL:0000404,5.90e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.98e-10!73;UBERON:0005743!9.98e-10!73;UBERON:0000073!1.15e-09!75;UBERON:0001016!1.15e-09!75;UBERON:0002346!1.62e-08!71;UBERON:0003075!1.62e-08!71;UBERON:0007284!1.62e-08!71;UBERON:0001049!1.70e-07!52;UBERON:0005068!1.70e-07!52;UBERON:0006241!1.70e-07!52;UBERON:0007135!1.70e-07!52;UBERON:0000025!2.76e-07!114;UBERON:0004121!3.21e-07!102;UBERON:0000924!3.21e-07!102;UBERON:0006601!3.21e-07!102;UBERON:0003056!8.99e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.52e-10,73;UBERON:0001016,1.10e-09,75;UBERON:0002346,1.01e-08,64;UBERON:0003075,1.01e-08,64;UBERON:0007284,1.01e-08,64;UBERON:0001049,1.65e-07,52;UBERON:0005068,1.65e-07,52;UBERON:0006241,1.65e-07,52;UBERON:0007135,1.65e-07,52;UBERON:0010314,3.74e-07,92;UBERON:0000073,3.93e-07,54;UBERON:0004121,4.20e-07,95;UBERON:0000924,4.20e-07,95;UBERON:0006601,4.20e-07,95;UBERON:0000025,4.47e-07,114;UBERON:0003056,8.13e-07,49 | |||
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| ||
|short_description=p@chr19:46574691..46574720,+ | |||
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Latest revision as of 05:44, 4 August 2015
Short description: | p@chr19:46574691..46574720, + |
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Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:46574691..46574720, + |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 7.47e-10 | 43 |
ectodermal cell | 2.74e-09 | 44 |
neurectodermal cell | 2.74e-09 | 44 |
CNS neuron (sensu Vertebrata) | 1.13e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.13e-08 | 23 |
embryonic cell | 3.82e-07 | 70 |
neuron | 5.90e-07 | 33 |
neuronal stem cell | 5.90e-07 | 33 |
neuroblast | 5.90e-07 | 33 |
electrically signaling cell | 5.90e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.52e-10 | 73 |
nervous system | 1.10e-09 | 75 |
neurectoderm | 1.01e-08 | 64 |
neural plate | 1.01e-08 | 64 |
presumptive neural plate | 1.01e-08 | 64 |
neural tube | 1.65e-07 | 52 |
neural rod | 1.65e-07 | 52 |
future spinal cord | 1.65e-07 | 52 |
neural keel | 1.65e-07 | 52 |
structure with developmental contribution from neural crest | 3.74e-07 | 92 |
regional part of nervous system | 3.93e-07 | 54 |
ectoderm-derived structure | 4.20e-07 | 95 |
ectoderm | 4.20e-07 | 95 |
presumptive ectoderm | 4.20e-07 | 95 |
tube | 4.47e-07 | 114 |
pre-chordal neural plate | 8.13e-07 | 49 |