FFCP PHASE1:Mm9::chr6:125095253..125095268,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=320678|HGNC=|UniProt=Q8BXL9,D3Z7B0,D3Z633,D6RH90|association_with_transcript=0bp_to_ENSMUST00000051171,ENSMUST00000088276,ENSMUST00000117675,ENSMUST00000119527,ENSMUST00000139071,ENSMUST00000144364,NM_001039669,NM_178787,uc009dto.1,uc009dtp.1,uc009dtq.1,uc009dtr.1,uc012est.1_5end|description=CAGE_peak_1_at_Iffo1_5end|id=chr6:125095253..125095268,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.36e-11!73;UBERON:0005743!6.36e-11!73;UBERON:0000073!4.24e-10!75;UBERON:0001016!4.24e-10!75;UBERON:0000955!4.22e-09!50;UBERON:0006238!4.22e-09!50;UBERON:0002346!4.33e-09!71;UBERON:0003075!4.33e-09!71;UBERON:0007284!4.33e-09!71;UBERON:0000153!6.67e-09!94;UBERON:0007811!1.05e-08!86;UBERON:0002616!1.36e-08!49;UBERON:0000033!2.32e-08!63;UBERON:0004121!3.70e-08!102;UBERON:0000924!3.70e-08!102;UBERON:0006601!3.70e-08!102;UBERON:0001049!4.97e-08!52;UBERON:0005068!4.97e-08!52;UBERON:0006241!4.97e-08!52;UBERON:0007135!4.97e-08!52;UBERON:0002021!6.88e-07!10;UBERON:0000411!6.88e-07!10;UBERON:0001950!6.88e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.32e-11,73;UBERON:0001016,4.22e-10,75;UBERON:0002346,7.01e-09,64;UBERON:0003075,7.01e-09,64;UBERON:0007284,7.01e-09,64;UBERON:0000073,9.18e-09,54;UBERON:0001049,4.95e-08,52;UBERON:0005068,4.95e-08,52;UBERON:0006241,4.95e-08,52;UBERON:0007135,4.95e-08,52;UBERON:0010314,5.06e-08,92;UBERON:0000955,7.23e-08,47;UBERON:0006238,7.23e-08,47;UBERON:0004121,8.44e-08,95;UBERON:0000924,8.44e-08,95;UBERON:0006601,8.44e-08,95;UBERON:0002616,2.21e-07,46;UBERON:0002021,6.86e-07,10;UBERON:0000411,6.86e-07,10;UBERON:0001950,6.86e-07,10|phase1_expression=4.96461426024861,0,0,0,0,0.16787927191189,0,6.19791952519566,1.83025338797167,0.936258105287974,0.856089841127525,0.957265907944037,11.4704489053908,6.90621179110079,5.66286595086627,6.47920855647443,9.09430441566591,12.1452933662922,12.2031845909108,10.6097412949508,10.2902381082794,7.94327609607082,9.14199261986274,0.159992422793407,0.91763712426868,0,0,0,0,0.252030129759931,0,2.54012269383853,2.46025915033828,0,0,0.332469290716985,0,6.27797446105362,4.6880120671428,5.23523743973798,11.7646297606203,8.87959130445979,8.73918635456076,6.42073771675444,6.18399280439039,4.03802854755699,4.69434806608824,6.5407546914134,3.29529274101708,6.80504646759992,5.17949760013841,7.18762821824858,7.04686945442493,11.6057942721815,8.4023449785616,6.43148590089868,9.74213695791773,8.76642556871652,4.45096213891115,6.34789175126439,6.33831403506179,4.40497891689872,2.66788438833342,7.19919773825119,9.88866362566974,7.8152812644071,8.98800331555214,15.7529505181837,4.45865332926454,5.13022565660425,3.57552434297349,8.56952953211411,11.0434270475807,4.04219637409348,3.1629005436018,5.51531271966013,14.3150645299205,13.6625451751151,14.7462271925994,4.08847491963601,5.58074625974699,5.73004707612436,15.355064945076,7.87867654044352,13.1406493088057,8.83885756421003,6.12198227436143,5.59198337475902,2.04460721999597,4.6854367266207,13.3337664802772,5.16254326188832,0,3.2382191498269,1.94932925234301,6.2723764193627,3.37066608316204,3.06774580640504,3.89679006904303,6.36011234118612,4.08445917352373,6.41632387071589,5.09610479413291,21.3320010945999,0,0,0,3.88225191044804,11.1343289968284,13.8051189330287,5.89850111004862,5.1759131313064,4.61230994512117,6.33035090321015,12.6995803706561,8.41966161908826,4.44950941921873,6.36237170447611,7.07688441559899,12.6178142958979,7.06692859073259,4.363877278217,0,33.3770108593164,38.3287473468623,3.0654846625031,4.43315960671905,2.99951365496704,5.46401976414178,21.7196427136993,21.5025283324754,7.91622418311046,22.0756886644191,19.6900902144355,21.1943805450751,26.2830846169767,3.66621709861139,9.57933673697716,3.0326731012041,7.36546495602659,3.6433724029557,5.74755261083682,5.22180176435513,7.08312643827861,11.4981683565744,13.5800543501941,11.6190138454064,20.9549730298603,4.095791865724,5.8622884852024,6.51019159406611,10.5213951565236,7.22922847986555,7.66154766348766,6.1734640922383,3.78165106955137,7.72434506044558,4.88961023517959,3.6941254921427,3.72826390563903,5.15957331958412,4.14142741360334,5.44512891845984,5.3126342571799,4.01094493507183,5.34828072925938,7.51165523918934,5.48797109125697,8.22799249567402,9.68588038066662,10.2146700027778,10.2339991197733,7.90380415047782,9.79706856950714,22.5010244963616,6.17427674275707,0.330418782983798,0.264450566663544,3.62590025909898,2.09013004674395,3.60828891701861,3.83198696784351,2.2237804384487,3.04361001780095,3.32170343081158,2.79988223030818,2.76468729680296,3.78017296878187,4.28920991662064,3.59527763461689,2.80979464837102,3.98282546508734,2.0863469104839,3.77020091612105,0,1.83286195060783,1.16371492300575,4.48869247298039,6.76630947229553,6.9376769550413,6.27994911365499,8.14421281883883,4.44678940630723,3.67059232575407,3.93117990226406,5.62155280962134,3.44862206360455,4.58236603529592,4.32863948028414,4.60313819921297,8.10676133875177,3.84385978463314,2.87536413054709,2.60498663367952,5.61667811606209,6.56705082662491,3.94674309748207,5.78932225636041,7.7596339869974,2.4633883530163,2.77040459951444,1.69745085775188,2.11221223459652,3.68513766371995,3.80869825417622,6.04914308359176,6.30540576424764,6.86540537911202,11.6401981119966,11.1427054006702,10.8791538575514,11.2826265693579,27.142431109069,18.4927932498361,2.95058563811422,1.10374698521893,18.7844190285717,30.8266735737494,1.3114795630134,12.6235463602186,8.20321370482267,6.63745865304285,8.83235930704476,10.0366895140072,10.0259403337077,9.6246020468203,10.1202675418724,13.151513606009,9.48690667071656,25.3843839973228,9.65192579416227,3.91744328067962,7.16702621155735,8.24850614862677,3.98235415019888,2.42780636154981,1.81394134178851,2.82907619633847,1.77181135728464,5.22639751504677,6.97756391554197,4.72593848320757,5.34746067577082,3.47640433729398,4.21674434299995,1.03135543248187,24.1712120085189,4.14140516272013,5.6917820864412,6.00143698088458,6.20690817747958,11.0588666913284,8.22745103010605,10.0473433207818,4.69343416127421,5.50763384245932,1.98475558249466,6.10079135883476,10.0107944551461,4.22190474497091,2.74556391207214,1.96969079694074,3.49777003955821,22.2510362412612,8.88528580148834,5.98521917093345,3.88908507476395,7.34636982318295,9.29520748502971,6.86334519619568,2.71965487990169,4.61839792668071,4.28419918793714,3.81868247206045,3.16335993581135,2.84647253977588,3.67218158794124,3.13632444021703,1.74690050996942,3.77620169877498,5.78574190077352,2.6175594198403,3.36998930558661,3.10669656543463,33.2578833823672,5.83114529571517,5.29467169462712,6.22243802700952,3.61647505737647,5.57555214119568,8.33236394384853,10.54655517236,13.0025587087881,27.0574215325127,24.7705805381764,11.6924114632426,3.04087822935246,3.90301637226344,5.84643703400078,8.41425469637163,9.73538638428198,11.2983722548771,8.56599257612548,10.2985778947111,10.135505285115,13.4098826231998,10.7203668813728,14.0469288794881,17.7652891315985,4.0811469050738,1.33191572024439,1.88399098879899,4.02923079273788,6.95482538515886,5.44279178808428,6.04400360081975,4.28736758158132,2.00628841614145,15.2482997506608,14.2700823317225,14.8952833494243,28.8713346337395,15.7568979547248,19.6402413321322,26.3258775090404,17.1122057225204,16.3131267234314,15.0150490408028,3.32119512269365,10.3746467084268,7.17081144167364,9.48116196566347,7.75568701723535,8.08911437180062,9.55660929546946,10.3017528619447,7.38114182061175,11.6240717411347,10.3926512954998,10.1858224348481,11.0496978814461,8.9635213366817,10.6829972257441,13.3362233559261,11.5884325944855,9.64546102318525,11.5384052224926,10.3039244094078,12.343293085875,12.600782237313,10.0143199777875,9.30217066446903,9.78737556319438,12.2691181442931,9.3293266165114,7.10288220882176,10.7285249938231,11.2228454331548,10.5585166130515,11.2295109908142,10.6400071224119,9.45114731234393,10.0311437710194,11.4912865851455,8.4215379040347,10.7435527024149,18.7462565427467,9.48543102213917,8.34724208233517|short_description=p1@Iffo1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:320678 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8BXL9,uniprot:D3Z7B0,uniprot:D3Z633,uniprot:D6RH90 | |||
|association_with_transcript=0bp_to_ENSMUST00000051171,ENSMUST00000088276,ENSMUST00000117675,ENSMUST00000119527,ENSMUST00000139071,ENSMUST00000144364,NM_001039669,NM_178787,uc009dto.1,uc009dtp.1,uc009dtq.1,uc009dtr.1,uc012est.1_5end | |||
|cluster_id=chr6:125095253..125095268,+ | |||
|description=CAGE_peak_1_at_Iffo1_5end | |||
|id=chr6:125095253..125095268,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.36e-11!73;UBERON:0005743!6.36e-11!73;UBERON:0000073!4.24e-10!75;UBERON:0001016!4.24e-10!75;UBERON:0000955!4.22e-09!50;UBERON:0006238!4.22e-09!50;UBERON:0002346!4.33e-09!71;UBERON:0003075!4.33e-09!71;UBERON:0007284!4.33e-09!71;UBERON:0000153!6.67e-09!94;UBERON:0007811!1.05e-08!86;UBERON:0002616!1.36e-08!49;UBERON:0000033!2.32e-08!63;UBERON:0004121!3.70e-08!102;UBERON:0000924!3.70e-08!102;UBERON:0006601!3.70e-08!102;UBERON:0001049!4.97e-08!52;UBERON:0005068!4.97e-08!52;UBERON:0006241!4.97e-08!52;UBERON:0007135!4.97e-08!52;UBERON:0002021!6.88e-07!10;UBERON:0000411!6.88e-07!10;UBERON:0001950!6.88e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.32e-11,73;UBERON:0001016,4.22e-10,75;UBERON:0002346,7.01e-09,64;UBERON:0003075,7.01e-09,64;UBERON:0007284,7.01e-09,64;UBERON:0000073,9.18e-09,54;UBERON:0001049,4.95e-08,52;UBERON:0005068,4.95e-08,52;UBERON:0006241,4.95e-08,52;UBERON:0007135,4.95e-08,52;UBERON:0010314,5.06e-08,92;UBERON:0000955,7.23e-08,47;UBERON:0006238,7.23e-08,47;UBERON:0004121,8.44e-08,95;UBERON:0000924,8.44e-08,95;UBERON:0006601,8.44e-08,95;UBERON:0002616,2.21e-07,46;UBERON:0002021,6.86e-07,10;UBERON:0000411,6.86e-07,10;UBERON:0001950,6.86e-07,10 | |||
|phase1_expression=4.96461426024861,0,0,0,0,0.16787927191189,0,6.19791952519566,1.83025338797167,0.936258105287974,0.856089841127525,0.957265907944037,11.4704489053908,6.90621179110079,5.66286595086627,6.47920855647443,9.09430441566591,12.1452933662922,12.2031845909108,10.6097412949508,10.2902381082794,7.94327609607082,9.14199261986274,0.159992422793407,0.91763712426868,0,0,0,0,0.252030129759931,0,2.54012269383853,2.46025915033828,0,0,0.332469290716985,0,6.27797446105362,4.6880120671428,5.23523743973798,11.7646297606203,8.87959130445979,8.73918635456076,6.42073771675444,6.18399280439039,4.03802854755699,4.69434806608824,6.5407546914134,3.29529274101708,6.80504646759992,5.17949760013841,7.18762821824858,7.04686945442493,11.6057942721815,8.4023449785616,6.43148590089868,9.74213695791773,8.76642556871652,4.45096213891115,6.34789175126439,6.33831403506179,4.40497891689872,2.66788438833342,7.19919773825119,9.88866362566974,7.8152812644071,8.98800331555214,15.7529505181837,4.45865332926454,5.13022565660425,3.57552434297349,8.56952953211411,11.0434270475807,4.04219637409348,3.1629005436018,5.51531271966013,14.3150645299205,13.6625451751151,14.7462271925994,4.08847491963601,5.58074625974699,5.73004707612436,15.355064945076,7.87867654044352,13.1406493088057,8.83885756421003,6.12198227436143,5.59198337475902,2.04460721999597,4.6854367266207,13.3337664802772,5.16254326188832,0,3.2382191498269,1.94932925234301,6.2723764193627,3.37066608316204,3.06774580640504,3.89679006904303,6.36011234118612,4.08445917352373,6.41632387071589,5.09610479413291,21.3320010945999,0,0,0,3.88225191044804,11.1343289968284,13.8051189330287,5.89850111004862,5.1759131313064,4.61230994512117,6.33035090321015,12.6995803706561,8.41966161908826,4.44950941921873,6.36237170447611,7.07688441559899,12.6178142958979,7.06692859073259,4.363877278217,0,33.3770108593164,38.3287473468623,3.0654846625031,4.43315960671905,2.99951365496704,5.46401976414178,21.7196427136993,21.5025283324754,7.91622418311046,22.0756886644191,19.6900902144355,21.1943805450751,26.2830846169767,3.66621709861139,9.57933673697716,3.0326731012041,7.36546495602659,3.6433724029557,5.74755261083682,5.22180176435513,7.08312643827861,11.4981683565744,13.5800543501941,11.6190138454064,20.9549730298603,4.095791865724,5.8622884852024,6.51019159406611,10.5213951565236,7.22922847986555,7.66154766348766,6.1734640922383,3.78165106955137,7.72434506044558,4.88961023517959,3.6941254921427,3.72826390563903,5.15957331958412,4.14142741360334,5.44512891845984,5.3126342571799,4.01094493507183,5.34828072925938,7.51165523918934,5.48797109125697,8.22799249567402,9.68588038066662,10.2146700027778,10.2339991197733,7.90380415047782,9.79706856950714,22.5010244963616,6.17427674275707,0.330418782983798,0.264450566663544,3.62590025909898,2.09013004674395,3.60828891701861,3.83198696784351,2.2237804384487,3.04361001780095,3.32170343081158,2.79988223030818,2.76468729680296,3.78017296878187,4.28920991662064,3.59527763461689,2.80979464837102,3.98282546508734,2.0863469104839,3.77020091612105,0,1.83286195060783,1.16371492300575,4.48869247298039,6.76630947229553,6.9376769550413,6.27994911365499,8.14421281883883,4.44678940630723,3.67059232575407,3.93117990226406,5.62155280962134,3.44862206360455,4.58236603529592,4.32863948028414,4.60313819921297,8.10676133875177,3.84385978463314,2.87536413054709,2.60498663367952,5.61667811606209,6.56705082662491,3.94674309748207,5.78932225636041,7.7596339869974,2.4633883530163,2.77040459951444,1.69745085775188,2.11221223459652,3.68513766371995,3.80869825417622,6.04914308359176,6.30540576424764,6.86540537911202,11.6401981119966,11.1427054006702,10.8791538575514,11.2826265693579,27.142431109069,18.4927932498361,2.95058563811422,1.10374698521893,18.7844190285717,30.8266735737494,1.3114795630134,12.6235463602186,8.20321370482267,6.63745865304285,8.83235930704476,10.0366895140072,10.0259403337077,9.6246020468203,10.1202675418724,13.151513606009,9.48690667071656,25.3843839973228,9.65192579416227,3.91744328067962,7.16702621155735,8.24850614862677,3.98235415019888,2.42780636154981,1.81394134178851,2.82907619633847,1.77181135728464,5.22639751504677,6.97756391554197,4.72593848320757,5.34746067577082,3.47640433729398,4.21674434299995,1.03135543248187,24.1712120085189,4.14140516272013,5.6917820864412,6.00143698088458,6.20690817747958,11.0588666913284,8.22745103010605,10.0473433207818,4.69343416127421,5.50763384245932,1.98475558249466,6.10079135883476,10.0107944551461,4.22190474497091,2.74556391207214,1.96969079694074,3.49777003955821,22.2510362412612,8.88528580148834,5.98521917093345,3.88908507476395,7.34636982318295,9.29520748502971,6.86334519619568,2.71965487990169,4.61839792668071,4.28419918793714,3.81868247206045,3.16335993581135,2.84647253977588,3.67218158794124,3.13632444021703,1.74690050996942,3.77620169877498,5.78574190077352,2.6175594198403,3.36998930558661,3.10669656543463,33.2578833823672,5.83114529571517,5.29467169462712,6.22243802700952,3.61647505737647,5.57555214119568,8.33236394384853,10.54655517236,13.0025587087881,27.0574215325127,24.7705805381764,11.6924114632426,3.04087822935246,3.90301637226344,5.84643703400078,8.41425469637163,9.73538638428198,11.2983722548771,8.56599257612548,10.2985778947111,10.135505285115,13.4098826231998,10.7203668813728,14.0469288794881,17.7652891315985,4.0811469050738,1.33191572024439,1.88399098879899,4.02923079273788,6.95482538515886,5.44279178808428,6.04400360081975,4.28736758158132,2.00628841614145,15.2482997506608,14.2700823317225,14.8952833494243,28.8713346337395,15.7568979547248,19.6402413321322,26.3258775090404,17.1122057225204,16.3131267234314,15.0150490408028,3.32119512269365,10.3746467084268,7.17081144167364,9.48116196566347,7.75568701723535,8.08911437180062,9.55660929546946,10.3017528619447,7.38114182061175,11.6240717411347,10.3926512954998,10.1858224348481,11.0496978814461,8.9635213366817,10.6829972257441,13.3362233559261,11.5884325944855,9.64546102318525,11.5384052224926,10.3039244094078,12.343293085875,12.600782237313,10.0143199777875,9.30217066446903,9.78737556319438,12.2691181442931,9.3293266165114,7.10288220882176,10.7285249938231,11.2228454331548,10.5585166130515,11.2295109908142,10.6400071224119,9.45114731234393,10.0311437710194,11.4912865851455,8.4215379040347,10.7435527024149,18.7462565427467,9.48543102213917,8.34724208233517 | |||
|short_description=p1@Iffo1 | |||
}} |
Revision as of 03:59, 5 August 2015
Short description: | p1@Iffo1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Iffo1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000051171, ENSMUST00000088276, ENSMUST00000117675, ENSMUST00000119527, ENSMUST00000139071, ENSMUST00000144364, NM_001039669, NM_178787, uc009dto.1, uc009dtp.1, uc009dtq.1, uc009dtr.1, uc012est.1_5end |
EntrezGene: | 320678 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.32e-11 | 73 |
nervous system | 4.22e-10 | 75 |
neurectoderm | 7.01e-09 | 64 |
neural plate | 7.01e-09 | 64 |
presumptive neural plate | 7.01e-09 | 64 |
regional part of nervous system | 9.18e-09 | 54 |
neural tube | 4.95e-08 | 52 |
neural rod | 4.95e-08 | 52 |
future spinal cord | 4.95e-08 | 52 |
neural keel | 4.95e-08 | 52 |
structure with developmental contribution from neural crest | 5.06e-08 | 92 |
brain | 7.23e-08 | 47 |
future brain | 7.23e-08 | 47 |
ectoderm-derived structure | 8.44e-08 | 95 |
ectoderm | 8.44e-08 | 95 |
presumptive ectoderm | 8.44e-08 | 95 |
regional part of brain | 2.21e-07 | 46 |
occipital lobe | 6.86e-07 | 10 |
visual cortex | 6.86e-07 | 10 |
neocortex | 6.86e-07 | 10 |