FFCP PHASE1:Hg19::chr1:109642840..109642861,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=677766 | |EntrezGene=677766 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=32558 | |HGNC=32558 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=25bp_to_ENST00000458748,NR_003023,uc001dwo.1_5end | |association_with_transcript=25bp_to_ENST00000458748,NR_003023,uc001dwo.1_5end | ||
|cluster_id=chr1:109642840..109642861,+ | |||
|coexpression_cluster_id=C1374 | |||
|description=CAGE_peak_2_at_SCARNA2_5end | |description=CAGE_peak_2_at_SCARNA2_5end | ||
|id=chr1:109642840..109642861,+ | |id=chr1:109642840..109642861,+ | ||
|ontology_enrichment_celltype=CL:0000738!2.80e-14!140;CL:0000037!2.92e-13!172;CL:0000566!2.92e-13!172;CL:0000791!7.26e-12!18;CL:0000789!7.26e-12!18;CL:0002420!7.26e-12!18;CL:0002419!7.26e-12!18;CL:0000790!7.26e-12!18;CL:0000988!8.17e-12!182;CL:0002032!6.18e-11!165;CL:0000837!6.18e-11!165;CL:0000542!1.56e-10!53;CL:0000051!1.56e-10!53;CL:0000838!1.63e-10!52;CL:0002087!5.37e-10!119;CL:0002031!1.74e-09!124;CL:0000084!5.72e-09!25;CL:0000827!5.72e-09!25;CL:0000625!1.79e-08!11;CL:0000236!5.93e-07!14 | |ontology_enrichment_celltype=CL:0000738!2.80e-14!140;CL:0000037!2.92e-13!172;CL:0000566!2.92e-13!172;CL:0000791!7.26e-12!18;CL:0000789!7.26e-12!18;CL:0002420!7.26e-12!18;CL:0002419!7.26e-12!18;CL:0000790!7.26e-12!18;CL:0000988!8.17e-12!182;CL:0002032!6.18e-11!165;CL:0000837!6.18e-11!165;CL:0000542!1.56e-10!53;CL:0000051!1.56e-10!53;CL:0000838!1.63e-10!52;CL:0002087!5.37e-10!119;CL:0002031!1.74e-09!124;CL:0000084!5.72e-09!25;CL:0000827!5.72e-09!25;CL:0000625!1.79e-08!11;CL:0000236!5.93e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000791;7.25e-12;18!CL:0000789;7.25e-12;18!CL:0002419;7.25e-12;18!CL:0000084;5.97e-09;25!CL:0000625;1.79e-08;11!CL:0000236;1.34e-07;13!CL:0000542;4.47e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.18e-15,136;CL:0000037,2.03e-14,168;CL:0000988,4.00e-13,177;CL:0002032,5.57e-12,161;CL:0000837,5.57e-12,161;CL:0000791,7.26e-12,18;CL:0000789,7.26e-12,18;CL:0002420,7.26e-12,18;CL:0002419,7.26e-12,18;CL:0000790,7.26e-12,18;CL:0002087,3.41e-11,115;CL:0002031,1.31e-10,120;CL:0000542,1.56e-10,53;CL:0000051,1.56e-10,53;CL:0000838,1.63e-10,52;CL:0000084,5.72e-09,25;CL:0000827,5.72e-09,25;CL:0000625,1.79e-08,11;CL:0000236,5.93e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;7.25e-12;18!CL:0000051;4.47e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.03e-31!115;UBERON:0001049!3.54e-11!57;UBERON:0005068!3.54e-11!57;UBERON:0006241!3.54e-11!57;UBERON:0007135!3.54e-11!57;UBERON:0003080!2.68e-10!42;UBERON:0002780!4.40e-10!41;UBERON:0001890!4.40e-10!41;UBERON:0006240!4.40e-10!41;UBERON:0002020!1.46e-08!34;UBERON:0003528!1.46e-08!34;UBERON:0001017!1.87e-08!82;UBERON:0001893!3.22e-08!34;UBERON:0002791!3.62e-08!33;UBERON:0002616!4.95e-08!59;UBERON:0001869!6.46e-08!32;UBERON:0005743!7.67e-08!86;UBERON:0002619!1.31e-07!22;UBERON:0000955!3.04e-07!69;UBERON:0006238!3.04e-07!69;UBERON:0000073!6.09e-07!94;UBERON:0001016!6.09e-07!94;UBERON:0001950!6.25e-07!20 | |ontology_enrichment_uberon=UBERON:0007023!5.03e-31!115;UBERON:0001049!3.54e-11!57;UBERON:0005068!3.54e-11!57;UBERON:0006241!3.54e-11!57;UBERON:0007135!3.54e-11!57;UBERON:0003080!2.68e-10!42;UBERON:0002780!4.40e-10!41;UBERON:0001890!4.40e-10!41;UBERON:0006240!4.40e-10!41;UBERON:0002020!1.46e-08!34;UBERON:0003528!1.46e-08!34;UBERON:0001017!1.87e-08!82;UBERON:0001893!3.22e-08!34;UBERON:0002791!3.62e-08!33;UBERON:0002616!4.95e-08!59;UBERON:0001869!6.46e-08!32;UBERON:0005743!7.67e-08!86;UBERON:0002619!1.31e-07!22;UBERON:0000955!3.04e-07!69;UBERON:0006238!3.04e-07!69;UBERON:0000073!6.09e-07!94;UBERON:0001016!6.09e-07!94;UBERON:0001950!6.25e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.66e-08;114!UBERON:0002780;1.15e-07;41!UBERON:0001890;1.15e-07;41!UBERON:0002619;1.31e-07;22!UBERON:0003528;1.69e-07;34!UBERON:0002020;1.69e-07;34!UBERON:0002791;2.81e-07;32!UBERON:0001869;3.21e-07;32!UBERON:0001893;3.83e-07;34!UBERON:0001950;6.27e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.96e-31,114;UBERON:0001049,5.84e-11,56;UBERON:0005068,5.84e-11,56;UBERON:0006241,5.84e-11,56;UBERON:0007135,5.84e-11,56;UBERON:0000073,2.84e-10,53;UBERON:0002616,2.84e-10,53;UBERON:0002780,4.40e-10,41;UBERON:0001890,4.40e-10,41;UBERON:0003080,4.40e-10,41;UBERON:0006240,4.40e-10,41;UBERON:0003528,1.46e-08,34;UBERON:0002020,1.46e-08,34;UBERON:0001017,2.91e-08,81;UBERON:0001893,3.22e-08,34;UBERON:0002791,5.11e-08,32;UBERON:0001869,6.46e-08,32;UBERON:0002619,1.31e-07,22;UBERON:0001016,2.83e-07,89;UBERON:0000955,4.69e-07,68;UBERON:0006238,4.69e-07,68;UBERON:0001950,6.25e-07,20 | |||
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838528 | ||
|short_description=p2@SCARNA2 | |short_description=p2@SCARNA2 | ||
}} | }} |
Latest revision as of 20:48, 15 September 2015
Short description: | p2@SCARNA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SCARNA2_5end |
Coexpression cluster: | C1374_CD8_CD4_CD19_granulocyte_CD133_CD34_Osteoblast |
Association with transcript: | 25bp_to_ENST00000458748, NR_003023, uc001dwo.1_5end |
EntrezGene: | SCARNA2 |
HGNC: | 32558 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.18e-15 | 136 |
hematopoietic stem cell | 2.03e-14 | 168 |
hematopoietic cell | 4.00e-13 | 177 |
hematopoietic oligopotent progenitor cell | 5.57e-12 | 161 |
hematopoietic multipotent progenitor cell | 5.57e-12 | 161 |
mature alpha-beta T cell | 7.26e-12 | 18 |
alpha-beta T cell | 7.26e-12 | 18 |
immature T cell | 7.26e-12 | 18 |
mature T cell | 7.26e-12 | 18 |
immature alpha-beta T cell | 7.26e-12 | 18 |
nongranular leukocyte | 3.41e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 1.31e-10 | 120 |
lymphocyte | 1.56e-10 | 53 |
common lymphoid progenitor | 1.56e-10 | 53 |
lymphoid lineage restricted progenitor cell | 1.63e-10 | 52 |
T cell | 5.72e-09 | 25 |
pro-T cell | 5.72e-09 | 25 |
CD8-positive, alpha-beta T cell | 1.79e-08 | 11 |
B cell | 5.93e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.96e-31 | 114 |
neural tube | 5.84e-11 | 56 |
neural rod | 5.84e-11 | 56 |
future spinal cord | 5.84e-11 | 56 |
neural keel | 5.84e-11 | 56 |
regional part of nervous system | 2.84e-10 | 53 |
regional part of brain | 2.84e-10 | 53 |
regional part of forebrain | 4.40e-10 | 41 |
forebrain | 4.40e-10 | 41 |
anterior neural tube | 4.40e-10 | 41 |
future forebrain | 4.40e-10 | 41 |
brain grey matter | 1.46e-08 | 34 |
gray matter | 1.46e-08 | 34 |
central nervous system | 2.91e-08 | 81 |
telencephalon | 3.22e-08 | 34 |
regional part of telencephalon | 5.11e-08 | 32 |
cerebral hemisphere | 6.46e-08 | 32 |
regional part of cerebral cortex | 1.31e-07 | 22 |
nervous system | 2.83e-07 | 89 |
brain | 4.69e-07 | 68 |
future brain | 4.69e-07 | 68 |
neocortex | 6.25e-07 | 20 |