FFCP PHASE1:Hg19::chr5:146939412..146939419,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=153469 | |EntrezGene=153469 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-137bp_to_ENST00000506321,NR_038902,uc003lop.1_5end | |association_with_transcript=-137bp_to_ENST00000506321,NR_038902,uc003lop.1_5end | ||
|cluster_id=chr5:146939412..146939419,+ | |||
|coexpression_cluster_id=C127 | |||
|description=CAGE_peak_2_at_LOC153469_5end | |description=CAGE_peak_2_at_LOC153469_5end | ||
|id=chr5:146939412..146939419,+ | |id=chr5:146939412..146939419,+ | ||
|ontology_enrichment_celltype=CL:0002319!4.33e-25!25;CL:0002322!5.69e-23!5;CL:0000133!2.23e-20!59;CL:0000221!1.36e-16!71;CL:0000128!2.24e-16!7;CL:0000126!2.24e-16!7;CL:0000127!2.24e-16!7;CL:0002453!2.24e-16!7;CL:0000047!6.09e-15!8;CL:0000243!1.02e-14!15;CL:0000125!1.02e-14!15;CL:0000030!1.02e-14!15;CL:0000339!1.02e-14!15;CL:0000095!4.05e-13!17;CL:0000123!4.05e-13!17;CL:0000064!1.79e-10!3;CL:0005012!1.79e-10!3;CL:0000067!1.79e-10!3;CL:0002304!1.79e-10!3;CL:0002603!2.38e-10!3;CL:0000333!1.64e-09!41;CL:0002174!1.10e-08!1;CL:0000501!1.10e-08!1 | |ontology_enrichment_celltype=CL:0002319!4.33e-25!25;CL:0002322!5.69e-23!5;CL:0000133!2.23e-20!59;CL:0000221!1.36e-16!71;CL:0000128!2.24e-16!7;CL:0000126!2.24e-16!7;CL:0000127!2.24e-16!7;CL:0002453!2.24e-16!7;CL:0000047!6.09e-15!8;CL:0000243!1.02e-14!15;CL:0000125!1.02e-14!15;CL:0000030!1.02e-14!15;CL:0000339!1.02e-14!15;CL:0000095!4.05e-13!17;CL:0000123!4.05e-13!17;CL:0000064!1.79e-10!3;CL:0005012!1.79e-10!3;CL:0000067!1.79e-10!3;CL:0002304!1.79e-10!3;CL:0002603!2.38e-10!3;CL:0000333!1.64e-09!41;CL:0002174!1.10e-08!1;CL:0000501!1.10e-08!1 | ||
|ontology_enrichment_celltype_v019=CL:0000047;5.69e-21;2!CL:0000064;1.83e-14;3!CL:0000067;1.83e-14;3!CL:0005012;1.83e-14;3!CL:0002304;1.83e-14;3!CL:0000306;3.42e-11;4!CL:0002222;3.42e-11;4!CL:0002224;3.42e-11;4!CL:0000075;7.45e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,2.09e-14,3;CL:0000067,2.09e-14,3;CL:0005012,2.09e-14,3;CL:0002304,2.09e-14,3;CL:0000306,3.42e-11,4;CL:0002222,3.42e-11,4;CL:0002224,3.42e-11,4;CL:0000075,7.67e-07,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050619!6.03e-09!1;DOID:1357!6.03e-09!1 | |ontology_enrichment_disease=DOID:0050619!6.03e-09!1;DOID:1357!6.03e-09!1 | ||
|ontology_enrichment_disease_v019=DOID:0050619;9.91e-41;1!DOID:1357;9.91e-41;1!DOID:5409;2.53e-11;4!DOID:0050615;5.28e-11;16!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,9.91e-41,1;DOID:1357,9.91e-41,1;DOID:5409,2.53e-11,4;DOID:0050615,5.28e-11,16;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0001778!1.79e-10!3;UBERON:0001775!1.79e-10!3;UBERON:0001017!4.08e-10!82;UBERON:0005743!1.47e-09!86;UBERON:0001764!6.03e-09!1;UBERON:0001825!6.03e-09!1;UBERON:0000073!1.79e-08!94;UBERON:0001016!1.79e-08!94;UBERON:0000488!4.54e-08!4;UBERON:0003076!1.19e-07!15;UBERON:0003057!1.19e-07!15;UBERON:0002680!1.52e-07!9;UBERON:0001895!1.52e-07!9;UBERON:0010092!1.52e-07!9 | |ontology_enrichment_uberon=UBERON:0001778!1.79e-10!3;UBERON:0001775!1.79e-10!3;UBERON:0001017!4.08e-10!82;UBERON:0005743!1.47e-09!86;UBERON:0001764!6.03e-09!1;UBERON:0001825!6.03e-09!1;UBERON:0000073!1.79e-08!94;UBERON:0001016!1.79e-08!94;UBERON:0000488!4.54e-08!4;UBERON:0003076!1.19e-07!15;UBERON:0003057!1.19e-07!15;UBERON:0002680!1.52e-07!9;UBERON:0001895!1.52e-07!9;UBERON:0010092!1.52e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0001764;9.91e-41;1!UBERON:0001825;9.91e-41;1!UBERON:0007625;2.33e-15;11!UBERON:0001778;1.83e-14;3!UBERON:0001775;1.83e-14;3!UBERON:0001801;2.66e-12;14!UBERON:0010077;3.42e-11;4!UBERON:0005389;3.42e-11;4!UBERON:0000488;3.42e-11;4!UBERON:0000484;3.42e-11;4!UBERON:0000965;3.42e-11;4!UBERON:0001803;3.42e-11;4!UBERON:0000019;2.46e-09;19!UBERON:0000047;2.46e-09;19!UBERON:0004088;2.46e-09;19!UBERON:0010230;2.46e-09;19!UBERON:0000970;6.42e-09;20!UBERON:0002104;1.53e-08;21!UBERON:0001456;1.53e-08;21!UBERON:0002203;6.78e-08;6!UBERON:0001768;6.78e-08;6!UBERON:0002200;6.78e-08;6!UBERON:0000020;6.98e-08;23!UBERON:0001032;1.36e-07;24!UBERON:0004456;1.36e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001764,9.91e-41,1;UBERON:0001825,9.91e-41,1;UBERON:0007625,2.51e-15,11;UBERON:0001778,2.09e-14,3;UBERON:0001775,2.09e-14,3;UBERON:0001801,2.82e-12,14;UBERON:0010077,3.42e-11,4;UBERON:0005389,3.42e-11,4;UBERON:0000484,3.42e-11,4;UBERON:0002546,3.42e-11,4;UBERON:0000965,3.42e-11,4;UBERON:0001803,3.42e-11,4;UBERON:0003073,3.42e-11,4;UBERON:0005426,3.42e-11,4;UBERON:0000488,3.79e-11,4;UBERON:0000019,6.69e-09,20;UBERON:0000047,6.69e-09,20;UBERON:0010312,6.69e-09,20;UBERON:0004088,6.69e-09,20;UBERON:0010230,6.69e-09,20;UBERON:0003072,6.69e-09,20;UBERON:0004128,6.69e-09,20;UBERON:0003071,6.69e-09,20;UBERON:0000970,1.59e-08,21;UBERON:0002104,1.59e-08,21;UBERON:0001456,3.51e-08,22;UBERON:0002203,7.25e-08,6;UBERON:0001768,7.25e-08,6;UBERON:0002200,7.25e-08,6;UBERON:0000020,1.40e-07,24;UBERON:0001032,1.40e-07,24;UBERON:0004456,1.40e-07,24;UBERON:0000033,3.84e-07,56 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,1.03988298880475,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.265059536642971,0.348581828608555,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27523445472584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.815425236441684,0.732219924186332,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687697182986169,0.83088067605837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,7.69565071626148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.01917182476616,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,0,0.26721740526556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,1.03988298880475,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.265059536642971,0.348581828608555,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27523445472584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.815425236441684,0.732219924186332,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687697182986169,0.83088067605837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,7.69565071626148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.01917182476616,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,0,0.26721740526556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@LOC153469 | |short_description=p2@LOC153469 | ||
}} | }} |
Latest revision as of 22:33, 15 September 2015
Short description: | p2@LOC153469 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LOC153469_5end |
Coexpression cluster: | C127_maxillary_small_hepatoblastoma_hepatocellular_alveolar_colon_argyrophil |
Association with transcript: | -137bp_to_ENST00000506321, NR_038902, uc003lop.1_5end |
EntrezGene: | LOC153469 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 2.09e-14 | 3 |
ciliated epithelial cell | 2.09e-14 | 3 |
multi-ciliated epithelial cell | 2.09e-14 | 3 |
non-pigmented ciliary epithelial cell | 2.09e-14 | 3 |
crystallin accumulating cell | 3.42e-11 | 4 |
vertebrate lens cell | 3.42e-11 | 4 |
lens epithelial cell | 3.42e-11 | 4 |
columnar/cuboidal epithelial cell | 7.67e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
maxillary sinus | 9.91e-41 | 1 |
paranasal sinus | 9.91e-41 | 1 |
pigment epithelium of eye | 2.51e-15 | 11 |
ciliary epithelium | 2.09e-14 | 3 |
ciliary body | 2.09e-14 | 3 |
anterior segment of eyeball | 2.82e-12 | 14 |
cuboidal epithelium | 3.42e-11 | 4 |
transparent eye structure | 3.42e-11 | 4 |
simple cuboidal epithelium | 3.42e-11 | 4 |
cranial placode | 3.42e-11 | 4 |
lens of camera-type eye | 3.42e-11 | 4 |
epithelium of lens | 3.42e-11 | 4 |
lens placode | 3.42e-11 | 4 |
lens vesicle | 3.42e-11 | 4 |
atypical epithelium | 3.79e-11 | 4 |
camera-type eye | 6.69e-09 | 20 |
simple eye | 6.69e-09 | 20 |
immature eye | 6.69e-09 | 20 |
ocular region | 6.69e-09 | 20 |
eyeball of camera-type eye | 6.69e-09 | 20 |
optic cup | 6.69e-09 | 20 |
optic vesicle | 6.69e-09 | 20 |
eye primordium | 6.69e-09 | 20 |
eye | 1.59e-08 | 21 |
visual system | 1.59e-08 | 21 |
face | 3.51e-08 | 22 |
vasculature of eye | 7.25e-08 | 6 |
uvea | 7.25e-08 | 6 |
vasculature of head | 7.25e-08 | 6 |
sense organ | 1.40e-07 | 24 |
sensory system | 1.40e-07 | 24 |
entire sense organ system | 1.40e-07 | 24 |
head | 3.84e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 9.91e-41 | 1 |
maxillary sinus cancer | 9.91e-41 | 1 |
lung small cell carcinoma | 2.53e-11 | 4 |
respiratory system cancer | 5.28e-11 | 16 |
bronchus cancer | 5.08e-07 | 7 |
bronchogenic carcinoma | 5.08e-07 | 7 |