FFCP PHASE1:Hg19::chr2:238277567..238277581,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1293 | |EntrezGene=1293 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2213 | |HGNC=2213 | ||
|TSSclassifier=strong | |||
|UniProt=Q59F25 | |UniProt=Q59F25 | ||
|association_with_transcript=99bp_to_AB209636_5end | |association_with_transcript=99bp_to_AB209636_5end | ||
|cluster_id=chr2:238277567..238277581,- | |||
|coexpression_cluster_id=C332 | |||
|description=CAGE_peak_9_at_COL6A3_5end | |description=CAGE_peak_9_at_COL6A3_5end | ||
|id=chr2:238277567..238277581,- | |id=chr2:238277567..238277581,- | ||
|ontology_enrichment_celltype=CL:0000055!1.01e-39!180;CL:0000057!4.55e-28!75;CL:0000048!2.62e-18!430;CL:0000723!1.07e-17!436;CL:0000183!2.56e-17!59;CL:0000680!3.25e-17!57;CL:0000056!3.25e-17!57;CL:0000355!3.25e-17!57;CL:0000034!8.62e-17!444;CL:0000187!8.70e-17!54;CL:0002620!4.03e-14!23;CL:0000393!1.20e-13!60;CL:0000211!1.20e-13!60;CL:0002371!7.18e-12!591;CL:0002320!5.84e-10!365;CL:0000192!6.05e-10!42;CL:0000514!6.05e-10!42;CL:0000144!8.24e-09!625;CL:0000499!1.97e-08!27;CL:0000188!6.19e-08!9;CL:0000134!1.06e-07!358 | |ontology_enrichment_celltype=CL:0000055!1.01e-39!180;CL:0000057!4.55e-28!75;CL:0000048!2.62e-18!430;CL:0000723!1.07e-17!436;CL:0000183!2.56e-17!59;CL:0000680!3.25e-17!57;CL:0000056!3.25e-17!57;CL:0000355!3.25e-17!57;CL:0000034!8.62e-17!444;CL:0000187!8.70e-17!54;CL:0002620!4.03e-14!23;CL:0000393!1.20e-13!60;CL:0000211!1.20e-13!60;CL:0002371!7.18e-12!591;CL:0002320!5.84e-10!365;CL:0000192!6.05e-10!42;CL:0000514!6.05e-10!42;CL:0000144!8.24e-09!625;CL:0000499!1.97e-08!27;CL:0000188!6.19e-08!9;CL:0000134!1.06e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000134;5.96e-12;55!CL:0000723;1.30e-11;61!CL:0000188;7.87e-11;9!CL:0000048;1.30e-10;58!CL:0002620;1.31e-09;23!CL:0002570;1.95e-08;8!CL:0000034;3.15e-08;69!CL:0000057;1.40e-07;73!CL:0002552;1.45e-07;5!CL:0002320;2.55e-07;188!CL:0000499;3.24e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.93e-18,427;CL:0000057,2.88e-18,76;CL:0000723,9.49e-18,433;CL:0000034,7.38e-17,441;CL:0002320,6.61e-14,361;CL:0000188,1.76e-11,9;CL:0000134,1.71e-10,354;CL:0000680,8.50e-10,58;CL:0000056,8.50e-10,58;CL:0000355,8.50e-10,58;CL:0002620,1.41e-09,23;CL:0000187,5.52e-09,55;CL:0002570,1.83e-08,8;CL:0000219,4.63e-08,386;CL:0002552,1.48e-07,5;CL:0000393,1.79e-07,61;CL:0000211,1.79e-07,61;CL:0000499,3.55e-07,28 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;5.74e-08;5!DOID:450;5.74e-08;5!DOID:66;5.74e-08;5!DOID:423;5.74e-08;5!DOID:0080000;5.74e-08;5!DOID:11722;5.74e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.90e-08,5;DOID:450,4.90e-08,5;DOID:66,4.90e-08,5;DOID:423,4.90e-08,5;DOID:0080000,4.90e-08,5;DOID:11722,4.90e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.21e-20!83;UBERON:0002329!3.21e-20!83;UBERON:0003077!3.21e-20!83;UBERON:0003059!3.21e-20!83;UBERON:0007282!3.21e-20!83;UBERON:0009618!3.21e-20!83;UBERON:0007285!3.21e-20!83;UBERON:0004290!9.04e-19!70;UBERON:0002385!7.55e-16!63;UBERON:0001015!7.55e-16!63;UBERON:0000383!7.55e-16!63;UBERON:0000486!2.90e-15!82;UBERON:0001134!4.49e-15!61;UBERON:0002036!4.49e-15!61;UBERON:0003082!4.49e-15!61;UBERON:0002199!2.23e-12!45;UBERON:0002416!2.23e-12!45;UBERON:0005256!3.82e-12!143;UBERON:0003102!1.07e-11!95;UBERON:0002097!2.78e-10!40;UBERON:0002384!2.45e-09!375;UBERON:0002100!1.28e-08!216;UBERON:0000475!9.92e-08!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.69e-09;31!UBERON:0001015;1.69e-09;31!UBERON:0000383;1.69e-09;31!UBERON:0002199;6.90e-09;46!UBERON:0002416;6.90e-09;46!UBERON:0004905;9.69e-09;8!UBERON:0000982;9.69e-09;8!UBERON:0004770;9.69e-09;8!UBERON:0002204;1.01e-08;70!UBERON:0011135;6.31e-08;5!UBERON:0002216;6.31e-08;5!UBERON:0011134;6.31e-08;5!UBERON:0002209;6.31e-08;5!UBERON:0002213;6.31e-08;5!UBERON:0007844;6.31e-08;5!UBERON:0011138;6.31e-08;5!UBERON:0001130;6.31e-08;5!UBERON:0001066;6.31e-08;5!UBERON:0001468;6.31e-08;5!UBERON:0001134;7.39e-08;16!UBERON:0002036;7.39e-08;16!UBERON:0002097;1.65e-07;41!UBERON:0001013;4.93e-07;14!UBERON:0002384;5.71e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,7.70e-13,371;UBERON:0002199,3.30e-12,46;UBERON:0002416,3.30e-12,46;UBERON:0007524,3.80e-11,73;UBERON:0002329,7.64e-11,71;UBERON:0003059,7.64e-11,71;UBERON:0007282,7.64e-11,71;UBERON:0004290,7.64e-11,71;UBERON:0009618,7.64e-11,71;UBERON:0003102,1.02e-10,99;UBERON:0003077,1.42e-10,72;UBERON:0007285,1.42e-10,72;UBERON:0000486,1.37e-09,83;UBERON:0002097,3.14e-09,41;UBERON:0007503,4.09e-09,78;UBERON:0002385,4.49e-09,64;UBERON:0001015,4.49e-09,64;UBERON:0000383,4.49e-09,64;UBERON:0003104,8.01e-09,160;UBERON:0009142,8.01e-09,160;UBERON:0004905,9.48e-09,8;UBERON:0000982,9.48e-09,8;UBERON:0004770,9.48e-09,8;UBERON:0001134,1.04e-08,62;UBERON:0002036,1.04e-08,62;UBERON:0003082,1.04e-08,62;UBERON:0011135,3.86e-08,5;UBERON:0002216,3.86e-08,5;UBERON:0011134,3.86e-08,5;UBERON:0002209,3.86e-08,5;UBERON:0002213,3.86e-08,5;UBERON:0005856,3.86e-08,5;UBERON:0005866,3.86e-08,5;UBERON:0005863,3.86e-08,5;UBERON:0007844,3.86e-08,5;UBERON:0011138,3.86e-08,5;UBERON:0001130,3.86e-08,5;UBERON:0001066,3.86e-08,5;UBERON:0001468,3.86e-08,5;UBERON:0000926,9.22e-08,315;UBERON:0004120,9.22e-08,315;UBERON:0006603,9.22e-08,315;UBERON:0005256,1.70e-07,122;UBERON:0001013,5.22e-07,14 | |||
|phase1_expression=0.726713517082227,5.1384125733836,0.563817616383885,2.00146596706261,1.78784437770915,0,0,1.26343974685366,4.96252693579693,0.245733936501509,0,0,0.263766978228454,1.8564952944007,3.64537113300707,1.34465029290355,0.602694528023977,2.19093027116212,0.975865597581014,0,0.204000691244253,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,0.670700859703636,0.383587685530591,2.1686349143074,1.50401373190767,2.60723734129483,1.5905718941022,0.973269740605272,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2663051166458,0.529636723252875,11.1866282092037,1.77334191099179,0,0,1.97334038733728,0,1.61652806483626,1.47115712802113,1.21085942115945,6.33793516927999,0.234321431833797,1.5608003841516,1.1409436430889,2.83952493048422,0.587172493218824,0.971237666208789,0.702254033511242,1.22492502752936,2.57952066354713,2.78979609174567,2.37600571456411,6.67620709052104,0,0.718618141816238,0.673344455816265,1.50142223846357,0,0.438977620880838,1.5324389789951,0.600952235626387,0.340296549480063,5.202299434977,3.84403299873421,1.69545520927649,6.30191301777245,2.06105058476878,4.3798891807757,0.37223371266318,3.20675031258406,1.55899208257918,6.81571190459109,1.10459878370759,0.80823028409406,9.23024940543197,0.906768884048762,0.847802961552438,0,0,0,0,0,0,0.10366105501537,0,0,1.56449532329816,14.7945415784364,0,3.71494342425583,1.44375896333917,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.8231480226628,1.47008711385542,0,0,0,0,0,0.343135620597051,0,0,0.100528972411631,0,0.977424915930974,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.224262168690721,2.1798003441664,0.5867062865676,0.775630294546667,0,1.690605505112,1.06375246633948,3.12022310734098,1.02882949704857,0,1.5985330740966,1.57275793023962,1.62786481617433,3.29296134712308,1.30294473717494,2.13235169245527,2.37585561880029,0,0,0,0,0,0,0.479249710983165,1.14861935834114,1.42636905040718,1.01346914667305,1.43833425785268,0,0,0.197030760201927,0,0,0.254094624222463,0,0,0,0,0,0,0,2.4538298343828,5.50187573165645,5.15403545029498,2.07970861530807,3.39015078714607,1.10391690523754,0.819989904948992,0.902838299183157,2.27407504055985,0,1.99267679560631,2.21243002250044,0.60818530127658,2.15381273209015,6.17658162859541,0,0,0,0,0,0,0.744323423456331,0.61384789315225,1.68396056659844,0.256278298511402,0,1.28683136914886,0,7.40206530252747,3.55123450626254,0.574890092096664,2.59627214591811,5.22946703069817,0,0,0,2.41110341145674,6.00900854422166,4.327105693661,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0,0,0,0,0,1.35339005608971,2.92692372517824,2.6095624703442,1.65403886981437,1.93356440762893,7.39585138962565,1.61930592090592,1.95870478422822,0,0.192190067365106,0,0,0,7.55549632393536,0.6970372701606,0.308033580176089,0,0,0,0,0.744316738719335,0.316379424718726,0.38126038784765,0.511795582622668,3.85145089230528,1.27281299170375,0,1.2591072030832,2.19629623788844,1.7671860351853,0,0,1.26377536871694,0.48763373908959,0.974853958525138,1.05650146756755,1.09199929126389,7.91870418940791,3.39024349860728,0.551365343546124,0.66343897524122,0,1.73632660280006,0.655894752046633,0.202910376962704,1.239293992399,0,0.286822704408103,0.491245205065606,0.7133421029625,0.354761064070598,1.05553817648832,4.61012850143863,0,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,2.17727711363265,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0.824378340616761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0.485560759068186,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0.138674673013139,0,0,0,1.04836000945218,0.171986032471617,0,0,0,0,0,0.90392296312213,0.548167698587004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52997326454483,0.288950589901519,0,0.136905378891993,0,0,0,1.11712960508902,0,0,0.599037001496973,0.858452096273142,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0.714695326373367,0,0,1.08599920350743,1.72844298240254,7.83809664262582,0,0,0,0,0,1.32506888912221,0,0,0,0,0.213574825135389,0.157204305099666,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2937214757744,0,0,3.28360566351123,4.67426619694449,2.21922344601045,2.65164207385125,8.55330865958755,2.66943366478961,0.686520205190771,3.02461847526478,2.33155800874171,1.92211694986524,1.43367090447332,0,1.08684069813382,2.90294345488599,4.51930914748591,4.17396049449387,0.751288044986092,0.761610424337591,1.22061219961398,2.90957854724095,0.429642228169954,0.464033759878494,1.59238355479446,0,2.40376993627955,3.36749488765919,0,0,0,0,0,1.15761237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| ||
|short_description=p9@COL6A3 | |short_description=p9@COL6A3 | ||
}} | }} |
Latest revision as of 03:37, 16 September 2015
Short description: | p9@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | 99bp_to_AB209636_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | Q59F25 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.93e-18 | 427 |
fibroblast | 2.88e-18 | 76 |
somatic stem cell | 9.49e-18 | 433 |
stem cell | 7.38e-17 | 441 |
connective tissue cell | 6.61e-14 | 361 |
cell of skeletal muscle | 1.76e-11 | 9 |
mesenchymal cell | 1.71e-10 | 354 |
muscle precursor cell | 8.50e-10 | 58 |
myoblast | 8.50e-10 | 58 |
multi-potent skeletal muscle stem cell | 8.50e-10 | 58 |
skin fibroblast | 1.41e-09 | 23 |
muscle cell | 5.52e-09 | 55 |
mesenchymal stem cell of adipose | 1.83e-08 | 8 |
motile cell | 4.63e-08 | 386 |
fibroblast of gingiva | 1.48e-07 | 5 |
electrically responsive cell | 1.79e-07 | 61 |
electrically active cell | 1.79e-07 | 61 |
stromal cell | 3.55e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.90e-08 | 5 |
myotonic disease | 4.90e-08 | 5 |
muscle tissue disease | 4.90e-08 | 5 |
myopathy | 4.90e-08 | 5 |
muscular disease | 4.90e-08 | 5 |
myotonic dystrophy | 4.90e-08 | 5 |