FFCP PHASE1:Hg19::chr10:105845611..105845645,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1308 | |EntrezGene=1308 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2194 | |HGNC=2194 | ||
|TSSclassifier=strong | |||
|UniProt=F5H0Q7,Q9UMD9 | |UniProt=F5H0Q7,Q9UMD9 | ||
|association_with_transcript=0bp_to_ENST00000541872,NM_000494,uc001kxr.2,uc009xxp.1,uc010qqv.1_5end | |association_with_transcript=0bp_to_ENST00000541872,NM_000494,uc001kxr.2,uc009xxp.1,uc010qqv.1_5end | ||
|cluster_id=chr10:105845611..105845645,- | |||
|coexpression_cluster_id=C640 | |||
|description=CAGE_peak_1_at_COL17A1_5end | |description=CAGE_peak_1_at_COL17A1_5end | ||
|id=chr10:105845611..105845645,- | |id=chr10:105845611..105845645,- | ||
|ontology_enrichment_celltype=CL:0002076!2.85e-25!43;CL:0000066!4.63e-19!254;CL:0000223!1.17e-18!59;CL:0002251!3.15e-14!21;CL:0002368!2.41e-12!13;CL:0002159!2.05e-09!13;CL:0002202!6.38e-08!9;CL:0002632!6.38e-08!9;CL:0000622!7.48e-08!5 | |ontology_enrichment_celltype=CL:0002076!2.85e-25!43;CL:0000066!4.63e-19!254;CL:0000223!1.17e-18!59;CL:0002251!3.15e-14!21;CL:0002368!2.41e-12!13;CL:0002159!2.05e-09!13;CL:0002202!6.38e-08!9;CL:0002632!6.38e-08!9;CL:0000622!7.48e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0002076;9.39e-21;42!CL:0002251;5.99e-18;20!CL:0002368;9.43e-16;13!CL:0002159;3.91e-11;14!CL:0002202;5.43e-10;9!CL:0002632;5.43e-10;9!CL:0000622;9.42e-10;5!CL:0000349;5.51e-09;19!CL:0000154;5.39e-08;6!CL:0000244;5.81e-08;4!CL:0000731;5.81e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.22e-27,42;CL:0000223,2.22e-21,58;CL:0000066,3.19e-19,253;CL:0002251,6.10e-18,20;CL:0002368,9.50e-16,13;CL:0002159,3.93e-11,14;CL:0002202,5.46e-10,9;CL:0002632,5.46e-10,9;CL:0000622,9.51e-10,5;CL:0000349,5.54e-09,19;CL:0000154,5.42e-08,6;CL:0000244,5.76e-08,4;CL:0000731,5.76e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000223;2.01e-11;58 | |||
|ontology_enrichment_disease=DOID:1749!2.37e-15!14;DOID:305!2.05e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.20e-17;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.16e-17,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.35e-25!169;UBERON:0000925!2.35e-25!169;UBERON:0006595!2.35e-25!169;UBERON:0001004!1.82e-19!72;UBERON:0001007!2.01e-17!155;UBERON:0001555!2.01e-17!155;UBERON:0007026!2.01e-17!155;UBERON:0004921!9.53e-15!129;UBERON:0004185!9.53e-15!129;UBERON:0000077!1.77e-14!130;UBERON:0000166!8.66e-13!21;UBERON:0005631!2.82e-12!14;UBERON:0000158!2.82e-12!14;UBERON:0000065!5.89e-12!53;UBERON:0000161!5.98e-12!35;UBERON:0000165!9.38e-11!28;UBERON:0000930!9.38e-11!28;UBERON:0001041!2.65e-10!98;UBERON:0003124!2.40e-09!7;UBERON:0000072!3.14e-09!46;UBERON:0004807!9.99e-09!28;UBERON:0005181!1.27e-08!35;UBERON:0000062!2.00e-08!511;UBERON:0005178!4.12e-08!34;UBERON:0002224!4.12e-08!34;UBERON:0000464!5.69e-08!104;UBERON:0001044!6.22e-08!6;UBERON:0003293!6.22e-08!6;UBERON:0003294!6.22e-08!6;UBERON:0010047!6.22e-08!6;UBERON:0000167!6.22e-08!6;UBERON:0003102!2.24e-07!95;UBERON:0003408!2.30e-07!10;UBERON:0000365!2.43e-07!5;UBERON:0000078!2.58e-07!18;UBERON:0004923!3.55e-07!57;UBERON:0000922!4.20e-07!612;UBERON:0005153!4.62e-07!37;UBERON:0007196!5.54e-07!14;UBERON:0001558!5.54e-07!14;UBERON:0005157!5.77e-07!51;UBERON:0003729!6.26e-07!5;UBERON:0000974!7.24e-07!10;UBERON:0000344!7.88e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;2.27e-14;19!UBERON:0000166;2.27e-14;19!UBERON:0000165;2.79e-13;28!UBERON:0001041;1.78e-11;14!UBERON:0005631;1.89e-10;10!UBERON:0000158;1.89e-10;10!UBERON:0001044;7.44e-10;6!UBERON:0003293;7.44e-10;6!UBERON:0003294;7.44e-10;6!UBERON:0010047;7.44e-10;6!UBERON:0003408;7.44e-10;6!UBERON:0000167;7.44e-10;6!UBERON:0004921;1.50e-09;33!UBERON:0000478;3.10e-09;24!UBERON:0000365;4.38e-09;5!UBERON:0000974;5.59e-09;6!UBERON:0001555;1.34e-08;54!UBERON:0000486;1.40e-08;12!UBERON:0007196;2.55e-08;15!UBERON:0001558;2.55e-08;15!UBERON:0000344;8.51e-08;20!UBERON:0003729;1.82e-07;13!UBERON:0005910;1.88e-07;6!UBERON:0005911;2.71e-07;36!UBERON:0001987;3.71e-07;4!UBERON:0003343;7.31e-07;4!UBERON:0004785;7.31e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.27e-22,160;UBERON:0000925,6.27e-22,160;UBERON:0006595,6.27e-22,160;UBERON:0001004,1.20e-17,74;UBERON:0000166,7.70e-16,22;UBERON:0005631,8.19e-16,14;UBERON:0000158,8.19e-16,14;UBERON:0001007,1.86e-13,145;UBERON:0001555,1.86e-13,145;UBERON:0007026,1.86e-13,145;UBERON:0000161,3.26e-13,36;UBERON:0000165,1.20e-12,29;UBERON:0000930,1.20e-12,29;UBERON:0000153,9.10e-12,62;UBERON:0007811,9.10e-12,62;UBERON:0003124,1.09e-11,7;UBERON:0004921,5.05e-11,118;UBERON:0003102,1.27e-10,99;UBERON:0001044,7.50e-10,6;UBERON:0003293,7.50e-10,6;UBERON:0003294,7.50e-10,6;UBERON:0010047,7.50e-10,6;UBERON:0000167,7.50e-10,6;UBERON:0000065,7.58e-10,54;UBERON:0001041,1.28e-09,87;UBERON:0000033,1.47e-09,56;UBERON:0003408,2.16e-09,10;UBERON:0000478,3.11e-09,24;UBERON:0000365,4.38e-09,5;UBERON:0000974,9.82e-09,10;UBERON:0007196,2.55e-08,15;UBERON:0001558,2.55e-08,15;UBERON:0004923,5.64e-08,66;UBERON:0000344,8.52e-08,20;UBERON:0006562,1.55e-07,11;UBERON:0000072,1.66e-07,47;UBERON:0001444,1.76e-07,49;UBERON:0004807,1.79e-07,28;UBERON:0003729,1.81e-07,13;UBERON:0005910,1.88e-07,6;UBERON:0001987,3.71e-07,4;UBERON:0004340,3.71e-07,4;UBERON:0003343,7.20e-07,4;UBERON:0004785,7.20e-07,4 | |||
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| ||
|short_description=p1@COL17A1 | |short_description=p1@COL17A1 | ||
}} | }} |
Latest revision as of 05:01, 16 September 2015
Short description: | p1@COL17A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL17A1_5end |
Coexpression cluster: | C640_amniotic_salivary_chorionic_Keratinocyte_Urothelial_Prostate_Mammary |
Association with transcript: | 0bp_to_ENST00000541872, NM_000494, uc001kxr.2, uc009xxp.1, uc010qqv.1_5end |
EntrezGene: | COL17A1 |
HGNC: | 2194 |
UniProt: | F5H0Q7Q9UMD9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.22e-27 | 42 |
endodermal cell | 2.22e-21 | 58 |
epithelial cell | 3.19e-19 | 253 |
epithelial cell of alimentary canal | 6.10e-18 | 20 |
respiratory epithelial cell | 9.50e-16 | 13 |
general ecto-epithelial cell | 3.93e-11 | 14 |
epithelial cell of tracheobronchial tree | 5.46e-10 | 9 |
epithelial cell of lower respiratory tract | 5.46e-10 | 9 |
acinar cell | 9.51e-10 | 5 |
extraembryonic cell | 5.54e-09 | 19 |
protein secreting cell | 5.42e-08 | 6 |
transitional epithelial cell | 5.76e-08 | 4 |
urothelial cell | 5.76e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.16e-17 | 14 |