FFCP PHASE1:Hg19::chr13:100634004..100634025,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7546 | |EntrezGene=7546 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12873 | |HGNC=12873 | ||
|TSSclassifier=strong | |||
|UniProt=O95409 | |UniProt=O95409 | ||
|association_with_transcript=0bp_to_ENST00000376335,NM_007129_5end | |association_with_transcript=0bp_to_ENST00000376335,NM_007129_5end | ||
|cluster_id=chr13:100634004..100634025,+ | |||
|coexpression_cluster_id=C1375 | |coexpression_cluster_id=C1375 | ||
|description=CAGE_peak_2_at_ZIC2_5end | |description=CAGE_peak_2_at_ZIC2_5end | ||
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|ontology_enrichment_celltype=CL:0002319!1.95e-11!25;CL:0000133!5.62e-09!59;CL:0000047!3.89e-08!8 | |ontology_enrichment_celltype=CL:0002319!1.95e-11!25;CL:0000133!5.62e-09!59;CL:0000047!3.89e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0002319;3.43e-15;25!CL:0002322;1.39e-08;5!CL:0000540;2.10e-08;6!CL:0000404;2.10e-08;6!CL:0000095;1.81e-07;17!CL:0000243;3.90e-07;15!CL:0000125;3.90e-07;15!CL:0000128;5.74e-07;7!CL:0000126;5.74e-07;7!CL:0000127;5.74e-07;7 | |ontology_enrichment_celltype_v019=CL:0002319;3.43e-15;25!CL:0002322;1.39e-08;5!CL:0000540;2.10e-08;6!CL:0000404;2.10e-08;6!CL:0000095;1.81e-07;17!CL:0000243;3.90e-07;15!CL:0000125;3.90e-07;15!CL:0000128;5.74e-07;7!CL:0000126;5.74e-07;7!CL:0000127;5.74e-07;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.03e-15,25;CL:0000133,1.10e-12,59;CL:0000047,5.41e-11,8;CL:0000221,6.51e-09,72;CL:0000540,1.11e-08,6;CL:0000031,1.11e-08,6;CL:0000404,1.11e-08,6;CL:0002322,1.42e-08,5;CL:0000095,9.76e-08,17;CL:0000123,9.76e-08,17;CL:0000243,2.10e-07,15;CL:0000125,2.10e-07,15;CL:0000030,2.10e-07,15;CL:0000339,2.10e-07,15;CL:0000128,4.66e-07,7;CL:0000126,4.66e-07,7;CL:0000127,4.66e-07,7;CL:0002453,4.66e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000031;2.10e-08;6!CL:0000339;3.90e-07;15!CL:0000133;8.30e-07;59 | |ontology_enrichment_development_v019=CL:0000031;2.10e-08;6!CL:0000339;3.90e-07;15!CL:0000133;8.30e-07;59 | ||
|ontology_enrichment_disease=DOID:162!3.91e-27!235;DOID:0050687!1.44e-26!143;DOID:14566!1.08e-25!239;DOID:305!3.91e-18!106;DOID:0050686!6.19e-08!137;DOID:3095!1.63e-07!22;DOID:2994!1.63e-07!22;DOID:299!5.05e-07!25 | |ontology_enrichment_disease=DOID:162!3.91e-27!235;DOID:0050687!1.44e-26!143;DOID:14566!1.08e-25!239;DOID:305!3.91e-18!106;DOID:0050686!6.19e-08!137;DOID:3095!1.63e-07!22;DOID:2994!1.63e-07!22;DOID:299!5.05e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:171;1.75e-07;10 | |ontology_enrichment_disease_v019=DOID:171;1.75e-07;10 | ||
|ontology_enrichment_disease_v019_2=DOID:162,2.21e-13,235;DOID:14566,1.13e-12,239;DOID:0050687,3.86e-12,143;DOID:171,1.72e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.17e-38!82;UBERON:0005743!6.48e-37!86;UBERON:0000073!1.96e-35!94;UBERON:0001016!1.96e-35!94;UBERON:0002346!1.87e-29!90;UBERON:0000955!5.03e-29!69;UBERON:0006238!5.03e-29!69;UBERON:0001049!5.35e-27!57;UBERON:0005068!5.35e-27!57;UBERON:0006241!5.35e-27!57;UBERON:0007135!5.35e-27!57;UBERON:0002616!2.15e-26!59;UBERON:0003075!4.23e-26!86;UBERON:0007284!4.23e-26!86;UBERON:0000924!7.58e-23!173;UBERON:0006601!7.58e-23!173;UBERON:0004121!2.73e-20!169;UBERON:0000033!3.74e-18!123;UBERON:0002780!6.20e-17!41;UBERON:0001890!6.20e-17!41;UBERON:0006240!6.20e-17!41;UBERON:0000153!8.48e-17!129;UBERON:0007811!8.48e-17!129;UBERON:0003056!2.12e-16!61;UBERON:0003080!3.05e-16!42;UBERON:0001893!4.64e-15!34;UBERON:0002020!6.30e-15!34;UBERON:0003528!6.30e-15!34;UBERON:0002791!1.47e-14!33;UBERON:0001869!2.44e-14!32;UBERON:0000956!4.44e-13!25;UBERON:0000203!4.44e-13!25;UBERON:0003076!9.98e-13!15;UBERON:0003057!9.98e-13!15;UBERON:0004733!2.11e-11!12;UBERON:0002028!2.11e-11!12;UBERON:0007277!2.11e-11!12;UBERON:0002619!4.04e-11!22;UBERON:0004732!3.57e-10!13;UBERON:0001950!5.15e-10!20;UBERON:0002680!5.49e-09!9;UBERON:0001895!5.49e-09!9;UBERON:0010092!5.49e-09!9;UBERON:0002037!1.91e-07!6;UBERON:0006215!1.91e-07!6 | |ontology_enrichment_uberon=UBERON:0001017!1.17e-38!82;UBERON:0005743!6.48e-37!86;UBERON:0000073!1.96e-35!94;UBERON:0001016!1.96e-35!94;UBERON:0002346!1.87e-29!90;UBERON:0000955!5.03e-29!69;UBERON:0006238!5.03e-29!69;UBERON:0001049!5.35e-27!57;UBERON:0005068!5.35e-27!57;UBERON:0006241!5.35e-27!57;UBERON:0007135!5.35e-27!57;UBERON:0002616!2.15e-26!59;UBERON:0003075!4.23e-26!86;UBERON:0007284!4.23e-26!86;UBERON:0000924!7.58e-23!173;UBERON:0006601!7.58e-23!173;UBERON:0004121!2.73e-20!169;UBERON:0000033!3.74e-18!123;UBERON:0002780!6.20e-17!41;UBERON:0001890!6.20e-17!41;UBERON:0006240!6.20e-17!41;UBERON:0000153!8.48e-17!129;UBERON:0007811!8.48e-17!129;UBERON:0003056!2.12e-16!61;UBERON:0003080!3.05e-16!42;UBERON:0001893!4.64e-15!34;UBERON:0002020!6.30e-15!34;UBERON:0003528!6.30e-15!34;UBERON:0002791!1.47e-14!33;UBERON:0001869!2.44e-14!32;UBERON:0000956!4.44e-13!25;UBERON:0000203!4.44e-13!25;UBERON:0003076!9.98e-13!15;UBERON:0003057!9.98e-13!15;UBERON:0004733!2.11e-11!12;UBERON:0002028!2.11e-11!12;UBERON:0007277!2.11e-11!12;UBERON:0002619!4.04e-11!22;UBERON:0004732!3.57e-10!13;UBERON:0001950!5.15e-10!20;UBERON:0002680!5.49e-09!9;UBERON:0001895!5.49e-09!9;UBERON:0010092!5.49e-09!9;UBERON:0002037!1.91e-07!6;UBERON:0006215!1.91e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0004733;6.38e-14;12!UBERON:0002028;6.38e-14;12!UBERON:0004732;1.36e-12;13!UBERON:0002680;1.85e-10;9!UBERON:0001895;1.85e-10;9!UBERON:0002037;5.11e-10;6!UBERON:0000955;3.20e-09;68!UBERON:0000073;1.73e-08;53!UBERON:0002616;1.73e-08;53!UBERON:0001017;1.74e-08;75!UBERON:0001016;1.99e-08;83!UBERON:0000956;1.09e-07;25!UBERON:0000203;1.09e-07;25!UBERON:0002346;3.44e-07;4!UBERON:0000923;3.44e-07;4!UBERON:0010316;3.44e-07;4!UBERON:0005291;3.44e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0004733;6.38e-14;12!UBERON:0002028;6.38e-14;12!UBERON:0004732;1.36e-12;13!UBERON:0002680;1.85e-10;9!UBERON:0001895;1.85e-10;9!UBERON:0002037;5.11e-10;6!UBERON:0000955;3.20e-09;68!UBERON:0000073;1.73e-08;53!UBERON:0002616;1.73e-08;53!UBERON:0001017;1.74e-08;75!UBERON:0001016;1.99e-08;83!UBERON:0000956;1.09e-07;25!UBERON:0000203;1.09e-07;25!UBERON:0002346;3.44e-07;4!UBERON:0000923;3.44e-07;4!UBERON:0010316;3.44e-07;4!UBERON:0005291;3.44e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.34e-28,89;UBERON:0001017,3.17e-28,81;UBERON:0004121,1.30e-20,171;UBERON:0000924,1.30e-20,171;UBERON:0006601,1.30e-20,171;UBERON:0000955,3.62e-19,68;UBERON:0006238,3.62e-19,68;UBERON:0002346,5.31e-18,86;UBERON:0003075,1.41e-14,82;UBERON:0007284,1.41e-14,82;UBERON:0000073,5.03e-14,53;UBERON:0002616,5.03e-14,53;UBERON:0001049,5.57e-14,56;UBERON:0005068,5.57e-14,56;UBERON:0006241,5.57e-14,56;UBERON:0007135,5.57e-14,56;UBERON:0004733,1.01e-13,12;UBERON:0002028,1.01e-13,12;UBERON:0007277,1.01e-13,12;UBERON:0004732,2.07e-12,13;UBERON:0003076,2.42e-12,15;UBERON:0003057,2.42e-12,15;UBERON:0010371,1.43e-10,104;UBERON:0002680,2.83e-10,9;UBERON:0001895,2.83e-10,9;UBERON:0010092,2.83e-10,9;UBERON:0002037,5.26e-10,6;UBERON:0006215,5.26e-10,6;UBERON:0003056,1.32e-08,61;UBERON:0011216,3.35e-08,223;UBERON:0000956,1.35e-07,25;UBERON:0000203,1.35e-07,25;UBERON:0010314,2.75e-07,132 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.247532705920093,0,0,0,0,0,7.38726348460727,7.54802557603736,8.77673220138646,2.86235987131057,2.46373965131192,1.63205431473244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74150969775797,3.32594096193846,2.28370442802128,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.05429710579726,5.18558332031999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3435546700524,22.2650010780095,14.8728246872984,9.53681706141408,15.3915719034133,18.9788226719432,0,0,0,0,0,0.709840800239063,1.51726221070292,0.723033089650446,1.21323370005633,0.653638332277218,1.18635309555548,0.134831308160164,0.392442930250692,0.769494313892781,0,0,0,0,0,0,0,0,0,2.74508496477641,0,0,0,0,0,0,5.77325368101093,6.26024186865415,3.17003474436719,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0.871901815541886,0,0,0,0,0,0,0,0,0,0,0,0,0,5.04589879554123,8.28324130783232,4.1069440059732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19812427745791,4.59447743336456,0,0,0,0,0,0,0,0,7.6228387266739,2.60279707715243,4.63973287666617,1.67516265334349,1.91381625495949,0,0,0,0.12269149171914,0,0,0.623912584592421,0.178428988797162,0,0.234282829985426,0,0,0,0,0,0,45.8174708462813,38.4320634668159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46511143709349,0.330037999682352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.32669227911434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95249063171651,0.962479855263359,0,0,0,0.640276590135727,1.11598390910176,0,0,0.846694330895531,0,0,1.36940807419915,0,0,4.9094615562465,0,0.201799707191048,0,0,0.614481528616916,1.11838053946208,1.66849141711908,0,2.22724939116194,0,2.97501246323581,0,0,0.935702702041099,0,3.15537356548735,0,4.54617834890261,0,0.296964680832639,0,0.994147647766298,1.40669416410513,0,3.46088135876195,0.211125408127993,0,0,0,0,0,0,0,0.537063524026827,0,0,0,0,2.90799823828566,1.20598527610407,0,0.7812832832557,0,0,0.341380344856499,1.01701460117107,1.89110145414349,0,0.874813840149763,1.73624994933292,0.885741385813839,0.482385754501632,74.7650507953708,30.519875741018,63.5427380750127,1.97446857438575,0.32681539055697,0.975966209950223,0.0769502585037971,0,0,0.538545866458633,0,0,0,0,0,0,0,2.03036094555463,2.15668787749514,2.01385904371011,0.75901493089674,0,3.16497096792041,1.14262965711403,0,0,0,0,0,0,0.123563938946503,0.104421949505455,1.07841812769083,0.802577647298789,0.937057782901357,1.82454789215666,0,0.485560759068186,0,1.20990716048664,2.75465485467441,5.2444861091645,1.05226393590145,3.7327748903009,4.6525771089503,2.64793564700399,2.5114633472578,0,2.56148591426813,1.10939738410511,1.90915712168644,0,1.91530254476886,0,1.54787429224455,1.16107597546902,1.31560770755134,0.574808199372465,0,17.8277375916831,2.03382666702479,0.411125773940253,2.18586072873289,0.949661939338181,0,1.76349404553374,0,0.799238438328521,1.72908500584927,0.572682980829578,1.88754497648161,0.14405479798815,1.61528296235062,0.942776138467182,1.76675467895698,1.67364554099733,1.52997326454483,1.73370353940911,0.600420288709789,0,0,0,0,0.279282401272254,0,0,0.399358000997982,0,0,0,0,0,0,0,0.0674035438541849,2.06697711180972,0,1.59045937961861,1.49823746722733,15.7538085495719,12.378549293751,12.0477698028464,0,0,0.789744236554321,1.67717343799633,0,0.0524545881349981,1.26720403823288,0.537862017998534,1.34340638123612,0,0,0,0,0,0,0,0,1.5334921960688,0.113312091520126,0,0,1.0342636508924,0.79339561045614,0.513260513652988,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,4.55456879125679,0,1.46431517882356,1.1267183763585,5.73409195690071,5.65738162837947,2.48385611765534,0,0.499921631848426,0,1.42732666772484,2.82318983637806,0,3.62302571527063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,1.30497145982606,0,0.463044948647668,0,1.07453304648892,0.308801447160972,0.438568099157414,0.176689145945881,0.771656153083659,0,1.53744911152768,1.72715170865599,0.303859956177382,1.24432592536558,0,0,0,2.6208787907713,0.737318726261158,0.422624246717254,0,0,0,0.567515953566836,1.84105950251841,0,0,0,0,22.6462956272491,28.9405541208837,7.97742890783918,22.107791690575,21.5648229810664,11.1728983594649,0,6.86097181510904,0,0,0,0.706521476061055,2.8339315265117,0.957803154342908,0.205116364240755,0.756215088665154,1.10651603942749,2.26065903884592,0,1.37406805901436,3.89300087047543,1.46742878817343,3.23471865220947,0,2.0710797781803,1.98916222116275,0,1.21023041222112,0,1.04762677792569,0.655087670040387,0.443568258651136,1.2156765231311,0.781078098613847,1.03343398250592,0.507326481551255,2.7348740450911,0,0,12.8386008382523,0.638812138197976,2.67850917939143,0.6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| ||
|short_description=p2@ZIC2 | |short_description=p2@ZIC2 | ||
}} | }} |
Latest revision as of 07:56, 16 September 2015
Short description: | p2@ZIC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ZIC2_5end |
Coexpression cluster: | C1375_cerebellum_Pericytes_extraskeletal_neuroblastoma_teratocarcinoma_neuroectodermal_H9 |
Association with transcript: | 0bp_to_ENST00000376335, NM_007129_5end |
EntrezGene: | ZIC2 |
HGNC: | 12873 |
UniProt: | O95409 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.03e-15 | 25 |
neurectodermal cell | 1.10e-12 | 59 |
neuronal stem cell | 5.41e-11 | 8 |
ectodermal cell | 6.51e-09 | 72 |
neuron | 1.11e-08 | 6 |
neuroblast | 1.11e-08 | 6 |
electrically signaling cell | 1.11e-08 | 6 |
embryonic stem cell | 1.42e-08 | 5 |
neuron associated cell | 9.76e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 9.76e-08 | 17 |
glial cell (sensu Vertebrata) | 2.10e-07 | 15 |
glial cell | 2.10e-07 | 15 |
glioblast | 2.10e-07 | 15 |
glioblast (sensu Vertebrata) | 2.10e-07 | 15 |
oligodendrocyte | 4.66e-07 | 7 |
macroglial cell | 4.66e-07 | 7 |
astrocyte | 4.66e-07 | 7 |
oligodendrocyte precursor cell | 4.66e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.34e-28 | 89 |
central nervous system | 3.17e-28 | 81 |
ectoderm-derived structure | 1.30e-20 | 171 |
ectoderm | 1.30e-20 | 171 |
presumptive ectoderm | 1.30e-20 | 171 |
brain | 3.62e-19 | 68 |
future brain | 3.62e-19 | 68 |
neurectoderm | 5.31e-18 | 86 |
neural plate | 1.41e-14 | 82 |
presumptive neural plate | 1.41e-14 | 82 |
regional part of nervous system | 5.03e-14 | 53 |
regional part of brain | 5.03e-14 | 53 |
neural tube | 5.57e-14 | 56 |
neural rod | 5.57e-14 | 56 |
future spinal cord | 5.57e-14 | 56 |
neural keel | 5.57e-14 | 56 |
segmental subdivision of hindbrain | 1.01e-13 | 12 |
hindbrain | 1.01e-13 | 12 |
presumptive hindbrain | 1.01e-13 | 12 |
segmental subdivision of nervous system | 2.07e-12 | 13 |
posterior neural tube | 2.42e-12 | 15 |
chordal neural plate | 2.42e-12 | 15 |
ecto-epithelium | 1.43e-10 | 104 |
regional part of metencephalon | 2.83e-10 | 9 |
metencephalon | 2.83e-10 | 9 |
future metencephalon | 2.83e-10 | 9 |
cerebellum | 5.26e-10 | 6 |
rhombic lip | 5.26e-10 | 6 |
pre-chordal neural plate | 1.32e-08 | 61 |
organ system subdivision | 3.35e-08 | 223 |
cerebral cortex | 1.35e-07 | 25 |
pallium | 1.35e-07 | 25 |
structure with developmental contribution from neural crest | 2.75e-07 | 132 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.21e-13 | 235 |
disease of cellular proliferation | 1.13e-12 | 239 |
cell type cancer | 3.86e-12 | 143 |
neuroectodermal tumor | 1.72e-07 | 10 |