FFCP PHASE1:Hg19::chr2:26700923..26700934,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9381 | |EntrezGene=9381 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8515 | |HGNC=8515 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HC10 | |UniProt=Q9HC10 | ||
|association_with_transcript=-13bp_to_ENST00000338581,ENST00000339598,ENST00000402415,NM_004802,NM_194322,NM_194323,uc002rhh.2,uc002rhi.2,uc002rhj.2_5end | |association_with_transcript=-13bp_to_ENST00000338581,ENST00000339598,ENST00000402415,NM_004802,NM_194322,NM_194323,uc002rhh.2,uc002rhi.2,uc002rhj.2_5end | ||
|cluster_id=chr2:26700923..26700934,- | |||
|coexpression_cluster_id=C830 | |||
|description=CAGE_peak_9_at_OTOF_5end | |description=CAGE_peak_9_at_OTOF_5end | ||
|id=chr2:26700923..26700934,- | |id=chr2:26700923..26700934,- | ||
|ontology_enrichment_celltype=CL:0000188!3.21e-17!9;CL:0005020!7.05e-15!6;CL:0002138!7.05e-15!6;CL:0005022!7.05e-15!6 | |ontology_enrichment_celltype=CL:0000188!3.21e-17!9;CL:0005020!7.05e-15!6;CL:0002138!7.05e-15!6;CL:0005022!7.05e-15!6 | ||
|ontology_enrichment_celltype_v019=CL:0002188;4.21e-21;5!CL:1000746;1.65e-15;7!CL:1000612;1.65e-15;7!CL:0002681;1.22e-09;12!CL:0002584;1.22e-09;12!CL:1000449;5.55e-08;15!CL:1000497;3.38e-07;17!CL:0002518;3.38e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002188,4.21e-21,5;CL:1000746,1.65e-15,7;CL:1000612,1.65e-15,7;CL:0002681,1.22e-09,12;CL:0002584,1.22e-09,12;CL:1000449,5.55e-08,15;CL:1000497,3.38e-07,17;CL:0002518,3.38e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001473!2.66e-11!8;UBERON:0004536!2.66e-11!8;UBERON:0006558!2.66e-11!8;UBERON:0002465!3.81e-09!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;1.65e-15;7!UBERON:0001229;1.65e-15;7!UBERON:0001225;1.22e-09;12!UBERON:0008987;1.22e-09;12!UBERON:0001851;5.55e-08;15!UBERON:0006555;5.55e-08;15!UBERON:0000353;5.55e-08;15!UBERON:0004819;5.55e-08;15!UBERON:0001285;5.55e-08;15!UBERON:0007684;5.55e-08;15!UBERON:0001134;1.54e-07;16!UBERON:0002036;1.54e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,1.65e-15,7;UBERON:0000074,1.65e-15,7;UBERON:0001229,1.65e-15,7;UBERON:0001230,1.65e-15,7;UBERON:0003220,1.65e-15,7;UBERON:0005749,1.65e-15,7;UBERON:0004199,1.65e-15,7;UBERON:0004209,1.65e-15,7;UBERON:0004198,1.65e-15,7;UBERON:0005103,9.39e-14,8;UBERON:0000083,9.39e-14,8;UBERON:0009201,9.39e-14,8;UBERON:0006553,9.39e-14,8;UBERON:0003074,9.39e-14,8;UBERON:0003060,9.39e-14,8;UBERON:0000080,2.19e-12,9;UBERON:0002120,2.19e-12,9;UBERON:0004875,2.19e-12,9;UBERON:0005721,2.19e-12,9;UBERON:0005754,2.19e-12,9;UBERON:0007297,2.19e-12,9;UBERON:0004876,2.16e-10,11;UBERON:0001225,1.22e-09,12;UBERON:0008987,1.22e-09,12;UBERON:0003887,1.22e-09,12;UBERON:0001851,5.55e-08,15;UBERON:0004211,5.55e-08,15;UBERON:0009773,5.55e-08,15;UBERON:0000353,5.55e-08,15;UBERON:0001231,5.55e-08,15;UBERON:0001285,5.55e-08,15;UBERON:0007684,5.55e-08,15;UBERON:0004208,5.55e-08,15;UBERON:0006555,1.45e-07,16;UBERON:0004819,1.45e-07,16 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.71136263451447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773365746336976,0.154048617114644,0.15350367472613,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0.301925687133347,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0.476128862927481,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.71136263451447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773365746336976,0.154048617114644,0.15350367472613,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0.301925687133347,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0.476128862927481,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p9@OTOF | |short_description=p9@OTOF | ||
}} | }} |
Latest revision as of 15:07, 16 September 2015
Short description: | p9@OTOF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_OTOF_5end |
Coexpression cluster: | C830_Renal_Endothelial_adipose_Mast_ovary_testis_Lymphatic |
Association with transcript: | -13bp_to_ENST00000338581, ENST00000339598, ENST00000402415, NM_004802, NM_194322, NM_194323, uc002rhh.2, uc002rhi.2, uc002rhj.2_5end |
EntrezGene: | OTOF |
HGNC: | 8515 |
UniProt: | Q9HC10 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 4.21e-21 | 5 |
glomerular cell | 1.65e-15 | 7 |
kidney corpuscule cell | 1.65e-15 | 7 |
kidney cortical cell | 1.22e-09 | 12 |
renal cortical epithelial cell | 1.22e-09 | 12 |
epithelial cell of nephron | 5.55e-08 | 15 |
kidney cell | 3.38e-07 | 17 |
kidney epithelial cell | 3.38e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 1.65e-15 | 7 |
renal glomerulus | 1.65e-15 | 7 |
renal corpuscle | 1.65e-15 | 7 |
glomerular capsule | 1.65e-15 | 7 |
metanephric mesenchyme | 1.65e-15 | 7 |
glomerular tuft | 1.65e-15 | 7 |
S-shaped body | 1.65e-15 | 7 |
renal vesicle | 1.65e-15 | 7 |
comma-shaped body | 1.65e-15 | 7 |
mesonephric epithelium | 9.39e-14 | 8 |
mesonephric tubule | 9.39e-14 | 8 |
nephric duct | 9.39e-14 | 8 |
renal duct | 9.39e-14 | 8 |
mesonephric duct | 9.39e-14 | 8 |
pronephric duct | 9.39e-14 | 8 |
mesonephros | 2.19e-12 | 9 |
pronephros | 2.19e-12 | 9 |
nephrogenic cord | 2.19e-12 | 9 |
pronephric mesoderm | 2.19e-12 | 9 |
rostral part of nephrogenic cord | 2.19e-12 | 9 |
presumptive pronephric mesoderm | 2.19e-12 | 9 |
urogenital ridge | 2.16e-10 | 11 |
cortex of kidney | 1.22e-09 | 12 |
renal parenchyma | 1.22e-09 | 12 |
intraembryonic coelom | 1.22e-09 | 12 |
cortex | 5.55e-08 | 15 |
nephron epithelium | 5.55e-08 | 15 |
renal tubule | 5.55e-08 | 15 |
parenchyma | 5.55e-08 | 15 |
nephron tubule | 5.55e-08 | 15 |
nephron | 5.55e-08 | 15 |
uriniferous tubule | 5.55e-08 | 15 |
nephrogenic mesenchyme | 5.55e-08 | 15 |
excretory tube | 1.45e-07 | 16 |
kidney epithelium | 1.45e-07 | 16 |