FFCP PHASE1:Hg19::chr4:16900320..16900332,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9079 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6533 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-19bp_to_ENST00000510825_5end | |||
|cluster_id=chr4:16900320..16900332,- | |||
|coexpression_cluster_id=C1083 | |||
|description=CAGE_peak_8_at_LDB2_5end | |||
|id=chr4:16900320..16900332,- | |||
|ontology_enrichment_celltype=CL:0002139!1.96e-09!24;CL:0000115!1.44e-08!35;CL:0000057!1.78e-08!75;CL:0002620!8.46e-07!23 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.40e-20!115;UBERON:0001869!5.86e-14!32;UBERON:0001893!5.87e-14!34;UBERON:0000956!1.93e-13!25;UBERON:0000203!1.93e-13!25;UBERON:0002619!2.28e-13!22;UBERON:0002791!3.40e-13!33;UBERON:0002020!3.59e-13!34;UBERON:0003528!3.59e-13!34;UBERON:0003080!3.80e-13!42;UBERON:0001017!5.02e-13!82;UBERON:0005743!8.90e-13!86;UBERON:0001950!1.04e-12!20;UBERON:0002780!1.15e-12!41;UBERON:0001890!1.15e-12!41;UBERON:0006240!1.15e-12!41;UBERON:0001049!1.51e-12!57;UBERON:0005068!1.51e-12!57;UBERON:0006241!1.51e-12!57;UBERON:0007135!1.51e-12!57;UBERON:0002346!5.54e-12!90;UBERON:0000073!2.87e-11!94;UBERON:0001016!2.87e-11!94;UBERON:0000955!3.42e-11!69;UBERON:0006238!3.42e-11!69;UBERON:0000477!1.16e-10!286;UBERON:0002616!2.09e-10!59;UBERON:0003075!4.97e-10!86;UBERON:0007284!4.97e-10!86;UBERON:0004111!7.28e-10!241;UBERON:0003056!3.83e-09!61;UBERON:0000025!1.42e-08!194;UBERON:0000153!1.57e-08!129;UBERON:0007811!1.57e-08!129;UBERON:0000033!2.31e-08!123;UBERON:0000468!2.67e-07!659;UBERON:0000119!4.41e-07!312;UBERON:0000924!4.55e-07!173;UBERON:0006601!4.55e-07!173;UBERON:0000483!7.87e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.07e-16;20!UBERON:0002619;1.58e-16;22!UBERON:0000956;5.87e-14;25!UBERON:0000203;5.87e-14;25!UBERON:0001869;5.33e-13;32!UBERON:0001893;1.20e-11;34!UBERON:0002791;1.44e-11;32!UBERON:0000922;4.02e-11;49!UBERON:0003528;1.85e-10;34!UBERON:0002020;1.85e-10;34!UBERON:0000200;1.93e-08;6!UBERON:0002050;2.83e-08;5!UBERON:0005423;2.83e-08;5!UBERON:0002780;1.43e-07;41!UBERON:0001890;1.43e-07;41!UBERON:0002346;6.66e-07;4!UBERON:0000923;6.66e-07;4!UBERON:0010316;6.66e-07;4!UBERON:0005291;6.66e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,7.75e-17,20;UBERON:0002619,9.59e-17,22;UBERON:0001869,1.72e-14,32;UBERON:0000956,3.81e-14,25;UBERON:0000203,3.81e-14,25;UBERON:0001893,2.79e-13,34;UBERON:0002791,9.66e-13,32;UBERON:0003528,1.16e-11,34;UBERON:0002020,1.16e-11,34;UBERON:0002780,5.87e-11,41;UBERON:0001890,5.87e-11,41;UBERON:0003080,5.87e-11,41;UBERON:0006240,5.87e-11,41;UBERON:0007023,9.85e-11,114;UBERON:0000200,7.22e-09,6;UBERON:0001017,3.22e-08,81;UBERON:0001049,2.62e-07,56;UBERON:0005068,2.62e-07,56;UBERON:0006241,2.62e-07,56;UBERON:0007135,2.62e-07,56;UBERON:0000073,3.76e-07,53;UBERON:0002616,3.76e-07,53 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.783556884599516,0,0,0,0,0.247532705920093,0,0,0,0,0.487932798790507,0.123121058076788,0.204000691244253,0,0.572471974262113,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,1.00267582127178,1.30361867064741,0,0.973269740605272,0.472674085820339,0.665188192387692,0,1.89919659471683,0,0,0,0,0,0,0,0,1.78886166630035,0.860234595106124,0.347140501607594,1.13061588384802,0.838998872419812,0.550236083880135,0.626984899610432,3.35941786920128,4.98072767761394,0.66944122552934,0.402829317109147,0,1.22031028774085,1.47065232138347,0.81014194788176,5.17938424047663,3.14341121676638,3.26573293401634,0,1.89853131913626,0.549605231791222,0,0,0,1.49091585508596,0.506522046658319,1.58891016975863,2.29469296599051,1.06400514659507,0.560677600142307,1.06748995729705,0,0.933633106199299,0.538842688278752,0.163461903113459,0.302714855289863,0,0.70296429550139,0.624320153660641,0.570471821544449,0,0,0,0.140450806702248,0,0.61417158655884,0.413303124703062,2.37600571456411,0.494533858557114,0,0,1.17835279767846,0.375355559615893,0.554128230968366,2.63386572528503,0.30648779579902,0.150238058906597,0.113432183160021,2.51145489964407,0.640672166455702,1.48352330811693,3.60109315301283,1.64884046781502,0.257640540045629,0.744467425326359,1.18143432568886,2.24105111870757,1.51460264546469,1.84099797284599,2.58633690910099,0.710019185033229,1.0075209822764,0.339121184620975,0,0,0,2.19552671033272,0.397589304964456,1.2781333715647,1.0366105501537,1.26160425437814,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.16708818237254,1.40241773803446,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0.117408694235822,1.58803092537181,0.925971025153221,1.71228737011138,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.288239906833923,0,0.190493682876507,0,1.17217447210047,0,0,0,0.285826432630578,0.224262168690721,0.43596006883328,0.07333828582095,0.646358578788889,0,0,0.797814349754612,2.08014873822732,0.257207374262142,0,0.266422179016099,0.142977993658148,0,0,0.65147236858747,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0.239624855491583,0,1.42636905040718,0,0,0,0,0,0,0,1.01637849688985,0,0,0.335032530668698,0,0,0,0,0.24538298343828,0,1.62759014219841,2.07970861530807,1.24900292158013,1.73472656537328,2.34282829985426,3.31040709700491,4.5481500811197,0,0.664225598535437,0.737476674166813,1.30325421702124,0.195801157462741,0.343143423810856,0,0,0,0,0,0,0,1.07423381301644,0.561320188866147,0.512556597022804,0.511707249066704,0.321707842287215,0,0.616838775210622,0.177561725313127,1.06765302817952,2.07701771673448,0.464841513839837,0,0,0,0.68888668898764,0.546273504020151,0.786746489756545,0,0.0770153371044148,0,0,0,2.27466768141793,1.19065593693561,0.647747748306418,0,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0,2.26690225624989,0.183138929636687,0.330037999682352,0,0,0,1.06337790121334,0.462145851343933,0.307007349452259,0.413509717453592,1.82614416276065,0.435050081742686,0.340906509664404,0.890320356467374,0,0,0,0,0.929691098594572,1.25924938732256,0,0,0,0,0,0,0,0,0.190630193923825,1.02359116524534,1.28381696410176,0.636406495851874,0,0.359744915166629,0.54907405947211,0.471249609382746,0,0,0,0,0,0,0.682499557039929,1.41405431953713,0,0,0,0,0,4.59126326432643,0.202910376962704,0,0.281695602532241,0,0,0,0.354761064070598,1.26664581178598,2.96365403663912,0.379473173765715,0.349934720244983,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,2.05111450980652,0,0,0,0,0,0,0,0.703347082052564,0,0,0,0.597743964753209,0.276283915531148,0,0.920418142519393,0,0,0,0,0,0.887790650732402,0,0,2.90799823828566,3.9890282209596,3.99227596002388,0,0,1.44999915086959,0,0,0,0,2.91604613383254,0,0.885741385813839,0.120596438625408,0,0.221158519862449,0,3.51016635446356,0,0,4.00141344219745,0.227884111694002,0,0,0,0,0.366390373607449,0,0,0.941881538370149,0,0,0,0,0,0,0,0,0,3.24582959613137,0.995261931078505,0.707660516026713,2.4441205797345,0,0,0,0.337005664903385,2.40773294189637,0,0,0,0,0.789168805698781,1.20990716048664,2.14250933141343,2.0851571277401,0,0,0,0,0,0,0,0,0,0,0,2.27144668714639,0,0,0,0,0.387956065953678,0,2.71176888936639,0.137041924646751,0,5.82459322794084,0,0,2.34798294213288,0,0,0,0,0,0,0,0,0,0.917983958726896,0.288950589901519,0,0,0,0,0,1.95497680890578,0.916641696046735,0.717873024576814,0,0,0.446342914883745,1.34366944973453,0,0,0,0,0,0,0,1.59045937961861,0.544813624446302,3.05430982083536,2.61324929534744,0,0,0,4.1917194094037,0,0.236417121897595,2.25554728980492,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0.326587360109409,0,0,2.3854323049959,0.113312091520126,1.31897010310274,0,0.258565912723101,0.26446520348538,0,0,2.88326013932776,1.25763444079733,2.48543433208317,0.496166021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| |||
|short_description=p8@LDB2 | |||
}} |
Latest revision as of 15:39, 16 September 2015
Short description: | p8@LDB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LDB2_5end |
Coexpression cluster: | C1083_lung_uterus_Endothelial_neuroectodermal_spleen_mesenchymal_occipital |
Association with transcript: | -19bp_to_ENST00000510825_5end |
EntrezGene: | LDB2 |
HGNC: | 6533 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 7.75e-17 | 20 |
regional part of cerebral cortex | 9.59e-17 | 22 |
cerebral hemisphere | 1.72e-14 | 32 |
cerebral cortex | 3.81e-14 | 25 |
pallium | 3.81e-14 | 25 |
telencephalon | 2.79e-13 | 34 |
regional part of telencephalon | 9.66e-13 | 32 |
brain grey matter | 1.16e-11 | 34 |
gray matter | 1.16e-11 | 34 |
regional part of forebrain | 5.87e-11 | 41 |
forebrain | 5.87e-11 | 41 |
anterior neural tube | 5.87e-11 | 41 |
future forebrain | 5.87e-11 | 41 |
adult organism | 9.85e-11 | 114 |
gyrus | 7.22e-09 | 6 |
central nervous system | 3.22e-08 | 81 |
neural tube | 2.62e-07 | 56 |
neural rod | 2.62e-07 | 56 |
future spinal cord | 2.62e-07 | 56 |
neural keel | 2.62e-07 | 56 |
regional part of nervous system | 3.76e-07 | 53 |
regional part of brain | 3.76e-07 | 53 |