FFCP PHASE1:Hg19::chr2:120125245..120125268,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1622 | |EntrezGene=1622 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2690 | |HGNC=2690 | ||
|TSSclassifier=strong | |||
|UniProt=P07108 | |UniProt=P07108 | ||
|association_with_transcript=0bp_to_ENST00000393103,NM_001079863,uc002tlx.2_5end | |association_with_transcript=0bp_to_ENST00000393103,NM_001079863,uc002tlx.2_5end | ||
|cluster_id=chr2:120125245..120125268,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_4_at_DBI_5end | |description=CAGE_peak_4_at_DBI_5end | ||
|id=chr2:120125245..120125268,+ | |id=chr2:120125245..120125268,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;3.38e-14;3!UBERON:0003057;3.38e-14;3!UBERON:0005754;1.18e-11;1!UBERON:0010226;2.81e-11;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.97e-18!57;UBERON:0005068!7.97e-18!57;UBERON:0006241!7.97e-18!57;UBERON:0007135!7.97e-18!57;UBERON:0005743!4.04e-16!86;UBERON:0001017!4.98e-16!82;UBERON:0002346!1.89e-14!90;UBERON:0007023!1.92e-14!115;UBERON:0003075!2.98e-14!86;UBERON:0007284!2.98e-14!86;UBERON:0000073!1.05e-13!94;UBERON:0001016!1.05e-13!94;UBERON:0002616!4.74e-13!59;UBERON:0000955!1.84e-12!69;UBERON:0006238!1.84e-12!69;UBERON:0002020!5.53e-12!34;UBERON:0003528!5.53e-12!34;UBERON:0001893!1.86e-11!34;UBERON:0002791!3.46e-11!33;UBERON:0003076!1.53e-10!15;UBERON:0003057!1.53e-10!15;UBERON:0002780!3.03e-10!41;UBERON:0001890!3.03e-10!41;UBERON:0006240!3.03e-10!41;UBERON:0001869!4.53e-10!32;UBERON:0003080!8.35e-10!42;UBERON:0003056!1.19e-08!61;UBERON:0000924!2.14e-08!173;UBERON:0006601!2.14e-08!173;UBERON:0000033!2.92e-08!123;UBERON:0004121!3.99e-08!169;UBERON:0000153!1.11e-07!129;UBERON:0007811!1.11e-07!129;UBERON:0004733!1.12e-07!12;UBERON:0002028!1.12e-07!12;UBERON:0007277!1.12e-07!12;UBERON:0000956!2.08e-07!25;UBERON:0000203!2.08e-07!25;UBERON:0002619!5.67e-07!22;UBERON:0004732!7.50e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;3.81e-15;11!UBERON:0006947;1.91e-14;3!UBERON:0004054;1.91e-14;3!UBERON:0002240;3.38e-14;3!UBERON:0005174;3.38e-14;3!UBERON:0001137;3.38e-14;3!UBERON:0000473;3.02e-12;8!UBERON:0000998;1.18e-11;1!UBERON:0006868;1.18e-11;1!UBERON:0002084;2.81e-11;1!UBERON:0002038;2.81e-11;1!UBERON:0001000;2.81e-11;1!UBERON:0009661;2.81e-11;1!UBERON:0002082;2.81e-11;1!UBERON:0002950;2.81e-11;1!UBERON:0005352;2.81e-11;1!UBERON:0001891;2.81e-11;1!UBERON:0005904;4.56e-11;4!UBERON:0003101;1.16e-07;22!UBERON:0000079;1.16e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,4.66e-15,11;UBERON:0006947,2.77e-14,3;UBERON:0004054,2.77e-14,3;UBERON:0002240,3.17e-14,3;UBERON:0005174,3.17e-14,3;UBERON:0001137,3.17e-14,3;UBERON:0000473,3.02e-12,8;UBERON:0000998,1.18e-11,1;UBERON:0006868,1.18e-11,1;UBERON:0002084,2.96e-11,1;UBERON:0002082,2.96e-11,1;UBERON:0010226,2.96e-11,1;UBERON:0001000,4.91e-11,1;UBERON:0005352,4.91e-11,1;UBERON:0002038,6.00e-11,1;UBERON:0009661,6.00e-11,1;UBERON:0002950,6.00e-11,1;UBERON:0001891,6.00e-11,1;UBERON:0009616,6.00e-11,1;UBERON:0010286,6.00e-11,1;UBERON:0005904,6.02e-11,4;UBERON:0000489,5.18e-08,31;UBERON:0003101,1.28e-07,22;UBERON:0000079,1.28e-07,22 | |||
|phase1_expression=0.181678379270557,0.856402095563933,0,0,0,0,0,0,1.56711376919903,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0,0,0,0,0,0.246242116153576,0,0.313454721478088,0.286235987131057,0.136874425072884,0,0.382067028739756,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0.0945348171640679,0,0.175669571386252,3.33996642519167,0.364295288292542,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0.234321431833797,0,0,0,0,0.161872944368132,0,0.204154171254893,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0.300091096084402,0,0.257640540045629,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0,0.243947412259191,0,0,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0.148631162288728,0,0,0,0.268675568108545,0,0,0,0,0.207328115540772,0.576479813667846,0.75745460055828,0.253991577168676,0,0,0,0,0.600686115687835,0.285826432630578,0.112131084345361,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0.76228387266739,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368738337083406,0.0868836144680828,0.391602314925481,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0.784349769176855,1.46139224653261,0,0,0.170093705276516,0,0,0,0,0.254876273045038,1.66215201785745,0.223874754722178,0,0,0,0.328014645699706,0,0.103041011647722,0,0.165018999841176,0,0,0,0,0.308097234229289,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0.511795582622668,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0.196498082026242,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0.142283686696828,0,0,0,0.211673582723883,0.324621940274555,0,0.456469358066384,0,0,0,0,0,0,0.343505344755765,0,0.447352215784832,0.166849141711909,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,0,1.18785872333055,0,0,0.422008249231538,0,0,0,0,0,0.251932747854276,0.102268682502155,0.246169610922139,0,0,0,0,0.0986434056369336,0,0,0,0.371072392647405,1.99613798001194,0.260427761085233,0,0,0.1137934482855,0,0,0,0,0.173624994933292,0.885741385813839,0.361789315876224,0,0.331737779793674,0.591095237907095,0.219385397153973,0.10893846351899,0,0,0,0,0.448788222048861,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0.995261931078505,0.0884575645033392,0.611030144933625,0,0.123563938946503,0,0.269604531922708,0,0.468528891450678,0,0,0,1.18375320854817,0,0.30607276163049,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0,0.174118413160805,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0.195551382734803,0,0.213452994739353,0,0.144090417154106,0,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0.958337652243951,0,0,0.262887354279314,0,0,0,0.199679000498991,0.429226048136571,0,0.0671834724867263,0,0,0.315132729228895,0.247247575143499,0.0674035438541849,0.0984274815147488,0,1.59045937961861,0.817220436669454,0.160753148465019,0.275078873194468,0,0,0,0.0607495566580247,0,0.157611414598396,0.157363764404994,0,0,0.383830394638891,0,1.32418394073086,0,0,0,0,0,0,0,0,0.58620893471233,0,0.904980694530854,0.26446520348538,0,0,0,0,0,0,0,0,0,1.63205341010842,0,0.306345576763462,0.655745261419609,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0.332787154610557,0.683060432355218,0.276697269872462,0,0,0,0,0,0.144921028610825,0.149254802886874,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0.214441591374926,0,0,0.463044948647668,0,0,0,0.219284049578707,0.176689145945881,0,0,0.512483037175893,0.345430341731199,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0.157265941855896,0,0.33946505990805,0,0.123935764259002,0,0,0.394308725006267,0,0,0,0.128458450192919,1.41696576325585,0.159633859057151,0.205116364240755,0,0.276629009856872,0.161475645631851,0,0.196295437002051,0.11796972334774,0,0,0.381382095467167,0,0,0,0.20170506870352,0,0.261906694481422,0.163771917510097,0,0.0675375846183947,0,0.206686796501184,0.253663240775627,0,0.548257766857182,0.496211178389294,0,0.383287282918786,0,0,0,0,0.0887023701626388,0.115233987555779,0.514464028312255,0.543757863814654,0.328863867814245,0.236387681767936,0.333694205676207,0,0.157115589916002,0,0,0,0.9555033757741,0.0714765441766563,0,0,0,0,0.207216164163037,0,0,0,0,0,2.54032230114557,0.4582137370881,0,0,0,0,0.853425474875886,0,0,0,0,0,0.198950775161368,0,0,0,0,0.308696632431779,1.09279780251979,0,0,0,1.57046773691956,0.594092800654172,1.2679671827502,0,0,0.0644578879735772,0,0,0,0,0,0,1.00337708206016,0,0.135982980381829,0,0,0,0,0,0.252332849670158,0.109265571963696,0,0,0,0,0,5.98651715924091,7.502995644373,0,0.310298987585686,0.213233981900981,0,0,0,0,0.12729431655633,0,0,0.342233301085281,0,0,0,0.244209805832924,0.426909383510862,0,0.269475606319761,0,0,0.406896178315738,0,0,0.320568492303233 | |phase1_expression=0.181678379270557,0.856402095563933,0,0,0,0,0,0,1.56711376919903,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0,0,0,0,0,0.246242116153576,0,0.313454721478088,0.286235987131057,0.136874425072884,0,0.382067028739756,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0.0945348171640679,0,0.175669571386252,3.33996642519167,0.364295288292542,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0.234321431833797,0,0,0,0,0.161872944368132,0,0.204154171254893,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0.300091096084402,0,0.257640540045629,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0,0.243947412259191,0,0,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0.148631162288728,0,0,0,0.268675568108545,0,0,0,0,0.207328115540772,0.576479813667846,0.75745460055828,0.253991577168676,0,0,0,0,0.600686115687835,0.285826432630578,0.112131084345361,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0.76228387266739,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368738337083406,0.0868836144680828,0.391602314925481,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0.784349769176855,1.46139224653261,0,0,0.170093705276516,0,0,0,0,0.254876273045038,1.66215201785745,0.223874754722178,0,0,0,0.328014645699706,0,0.103041011647722,0,0.165018999841176,0,0,0,0,0.308097234229289,0,0.137836572484531,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0.511795582622668,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0.196498082026242,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0.142283686696828,0,0,0,0.211673582723883,0.324621940274555,0,0.456469358066384,0,0,0,0,0,0,0.343505344755765,0,0.447352215784832,0.166849141711909,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,0,1.18785872333055,0,0,0.422008249231538,0,0,0,0,0,0.251932747854276,0.102268682502155,0.246169610922139,0,0,0,0,0.0986434056369336,0,0,0,0.371072392647405,1.99613798001194,0.260427761085233,0,0,0.1137934482855,0,0,0,0,0.173624994933292,0.885741385813839,0.361789315876224,0,0.331737779793674,0.591095237907095,0.219385397153973,0.10893846351899,0,0,0,0,0.448788222048861,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0.995261931078505,0.0884575645033392,0.611030144933625,0,0.123563938946503,0,0.269604531922708,0,0.468528891450678,0,0,0,1.18375320854817,0,0.30607276163049,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0,0.174118413160805,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0.195551382734803,0,0.213452994739353,0,0.144090417154106,0,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0.958337652243951,0,0,0.262887354279314,0,0,0,0.199679000498991,0.429226048136571,0,0.0671834724867263,0,0,0.315132729228895,0.247247575143499,0.0674035438541849,0.0984274815147488,0,1.59045937961861,0.817220436669454,0.160753148465019,0.275078873194468,0,0,0,0.0607495566580247,0,0.157611414598396,0.157363764404994,0,0,0.383830394638891,0,1.32418394073086,0,0,0,0,0,0,0,0,0.58620893471233,0,0.904980694530854,0.26446520348538,0,0,0,0,0,0,0,0,0,1.63205341010842,0,0.306345576763462,0.655745261419609,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0.332787154610557,0.683060432355218,0.276697269872462,0,0,0,0,0,0.144921028610825,0.149254802886874,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0.214441591374926,0,0,0.463044948647668,0,0,0,0.219284049578707,0.176689145945881,0,0,0.512483037175893,0.345430341731199,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0.157265941855896,0,0.33946505990805,0,0.123935764259002,0,0,0.394308725006267,0,0,0,0.128458450192919,1.41696576325585,0.159633859057151,0.205116364240755,0,0.276629009856872,0.161475645631851,0,0.196295437002051,0.11796972334774,0,0,0.381382095467167,0,0,0,0.20170506870352,0,0.261906694481422,0.163771917510097,0,0.0675375846183947,0,0.206686796501184,0.253663240775627,0,0.548257766857182,0.496211178389294,0,0.383287282918786,0,0,0,0,0.0887023701626388,0.115233987555779,0.514464028312255,0.543757863814654,0.328863867814245,0.236387681767936,0.333694205676207,0,0.157115589916002,0,0,0,0.9555033757741,0.0714765441766563,0,0,0,0,0.207216164163037,0,0,0,0,0,2.54032230114557,0.4582137370881,0,0,0,0,0.853425474875886,0,0,0,0,0,0.198950775161368,0,0,0,0,0.308696632431779,1.09279780251979,0,0,0,1.57046773691956,0.594092800654172,1.2679671827502,0,0,0.0644578879735772,0,0,0,0,0,0,1.00337708206016,0,0.135982980381829,0,0,0,0,0,0.252332849670158,0.109265571963696,0,0,0,0,0,5.98651715924091,7.502995644373,0,0.310298987585686,0.213233981900981,0,0,0,0,0.12729431655633,0,0,0.342233301085281,0,0,0,0.244209805832924,0.426909383510862,0,0.269475606319761,0,0,0.406896178315738,0,0,0.320568492303233 | ||
|short_description=p4@DBI | |short_description=p4@DBI | ||
}} | }} |
Latest revision as of 16:57, 16 September 2015
Short description: | p4@DBI |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_DBI_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000393103, NM_001079863, uc002tlx.2_5end |
EntrezGene: | DBI |
HGNC: | 2690 |
UniProt: | P07108 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 4.66e-15 | 11 |
male genital duct | 2.77e-14 | 3 |
internal male genitalia | 2.77e-14 | 3 |
spinal cord | 3.17e-14 | 3 |
dorsal region element | 3.17e-14 | 3 |
dorsum | 3.17e-14 | 3 |
testis | 3.02e-12 | 8 |
seminal vesicle | 1.18e-11 | 1 |
seminal fluid secreting gland | 1.18e-11 | 1 |
heart left ventricle | 2.96e-11 | 1 |
cardiac ventricle | 2.96e-11 | 1 |
future cardiac ventricle | 2.96e-11 | 1 |
vas deferens | 4.91e-11 | 1 |
spermatic cord | 4.91e-11 | 1 |
substantia nigra | 6.00e-11 | 1 |
midbrain nucleus | 6.00e-11 | 1 |
regional part of midbrain | 6.00e-11 | 1 |
midbrain | 6.00e-11 | 1 |
presumptive midbrain | 6.00e-11 | 1 |
midbrain neural tube | 6.00e-11 | 1 |
duct of male reproductive system | 6.02e-11 | 4 |
cavitated compound organ | 5.18e-08 | 31 |
male organism | 1.28e-07 | 22 |
male reproductive system | 1.28e-07 | 22 |