FFCP PHASE1:Hg19::chr12:120554515..120554531,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:120554515..120554531,-
|short_description=p3@RAB35
|description=CAGE_peak_3_at_RAB35_5end
|association_with_transcript=8bp_to_ENST00000538903_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11021 | |EntrezGene=11021 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9774 | |HGNC=9774 | ||
|TSSclassifier=strong | |||
|UniProt=F5H157 | |UniProt=F5H157 | ||
|association_with_transcript=8bp_to_ENST00000538903_5end | |||
|cluster_id=chr12:120554515..120554531,- | |||
|description=CAGE_peak_3_at_RAB35_5end | |||
|id=chr12:120554515..120554531,- | |||
|ontology_enrichment_celltype=CL:0000115!6.23e-16!35;CL:0002139!4.19e-15!24;CL:0000213!9.60e-14!57;CL:0000215!9.60e-14!57;CL:0002078!1.17e-13!44;CL:0000766!2.38e-12!76;CL:0000222!7.04e-12!119;CL:0000071!1.18e-11!18;CL:0002546!1.18e-11!18;CL:0002057!2.16e-11!42;CL:0002009!2.77e-11!65;CL:0002194!3.79e-11!63;CL:0000576!3.79e-11!63;CL:0000040!3.79e-11!63;CL:0000559!3.79e-11!63;CL:0000557!1.01e-10!71;CL:0000860!1.92e-10!45;CL:0000839!1.93e-10!70;CL:0002371!6.91e-09!591;CL:0000144!1.80e-08!625;CL:0000763!6.32e-08!112;CL:0000049!6.32e-08!112;CL:1000413!5.01e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;9.27e-18;24!CL:0000115;8.12e-17;36!CL:0000860;1.76e-15;33!CL:0002057;1.76e-15;33!CL:0000473;2.67e-14;39!CL:0000234;2.67e-14;39!CL:0000071;1.60e-13;18!CL:0002078;2.87e-12;45!CL:0000213;5.97e-10;58!CL:0000215;5.97e-10;58!CL:0000576;4.71e-09;48!CL:1000413;2.33e-08;9!CL:0000766;1.02e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,8.48e-21,36;CL:0002139,3.12e-18,24;CL:0002078,4.78e-18,45;CL:0000766,9.59e-17,72;CL:0000213,2.93e-16,58;CL:0000215,2.93e-16,58;CL:0000473,5.09e-15,48;CL:0000234,5.09e-15,48;CL:0002194,8.93e-15,59;CL:0000576,8.93e-15,59;CL:0000040,8.93e-15,59;CL:0000559,8.93e-15,59;CL:0002009,1.18e-14,61;CL:0000557,2.78e-14,67;CL:0000071,5.54e-14,18;CL:0002546,5.54e-14,18;CL:0000839,7.42e-14,66;CL:0000222,2.58e-13,121;CL:0000860,3.41e-13,42;CL:0002057,3.41e-13,42;CL:0000763,1.17e-09,108;CL:0000049,1.17e-09,108;CL:1000413,2.71e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002546;1.60e-13;18!CL:0002057;1.46e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.13e-27!216;UBERON:0002193!4.70e-15!112;UBERON:0004535!2.58e-13!110;UBERON:0001009!1.27e-12!113;UBERON:0000055!1.46e-12!69;UBERON:0004872!1.49e-12!84;UBERON:0001986!1.18e-11!18;UBERON:0004638!1.18e-11!18;UBERON:0004852!1.18e-11!18;UBERON:0002390!1.85e-11!102;UBERON:0003061!1.85e-11!102;UBERON:0002371!3.94e-11!80;UBERON:0002049!9.96e-11!79;UBERON:0007798!9.96e-11!79;UBERON:0002405!1.90e-10!115;UBERON:0000487!3.87e-10!22;UBERON:0001474!9.83e-10!86;UBERON:0001981!1.22e-09!60;UBERON:0007500!1.22e-09!60;UBERON:0004537!1.22e-09!60;UBERON:0006965!1.22e-09!60;UBERON:0003914!9.51e-09!118;UBERON:0006914!1.04e-08!25;UBERON:0002204!1.74e-08!167;UBERON:0004765!4.31e-08!101;UBERON:0001434!4.31e-08!101;UBERON:0000926!1.24e-07!448;UBERON:0004120!1.24e-07!448;UBERON:0006603!1.24e-07!448;UBERON:0003915!5.01e-07!9;UBERON:0004700!5.01e-07!9;UBERON:0001917!5.01e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.60e-13;18!UBERON:0001986;1.60e-13;18!UBERON:0004852;1.60e-13;18!UBERON:0000487;5.21e-12;22!UBERON:0006914;2.44e-10;25!UBERON:0000055;1.25e-08;65!UBERON:0003915;2.33e-08;9!UBERON:0004700;2.33e-08;9!UBERON:0001917;2.33e-08;9!UBERON:0000490;4.51e-07;33!UBERON:0007500;4.77e-07;56!UBERON:0001981;4.77e-07;56!UBERON:0004537;4.77e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,4.32e-29,203;UBERON:0002405,1.25e-17,93;UBERON:0002193,1.56e-17,108;UBERON:0000926,2.10e-17,315;UBERON:0004120,2.10e-17,315;UBERON:0006603,2.10e-17,315;UBERON:0000055,4.92e-14,68;UBERON:0004638,5.54e-14,18;UBERON:0001986,5.54e-14,18;UBERON:0004852,5.54e-14,18;UBERON:0004535,7.38e-14,109;UBERON:0004872,8.21e-14,83;UBERON:0002371,8.21e-14,76;UBERON:0002390,3.87e-13,98;UBERON:0003061,3.87e-13,98;UBERON:0001009,8.53e-13,112;UBERON:0000487,1.05e-12,22;UBERON:0001474,5.26e-12,82;UBERON:0004765,6.17e-12,90;UBERON:0002049,2.26e-11,78;UBERON:0007798,2.26e-11,78;UBERON:0006914,1.07e-10,25;UBERON:0007500,1.96e-10,59;UBERON:0001981,1.96e-10,59;UBERON:0004537,1.96e-10,59;UBERON:0006965,1.96e-10,59;UBERON:0002204,2.02e-09,167;UBERON:0001434,2.07e-09,100;UBERON:0003914,4.35e-09,117;UBERON:0003915,2.71e-08,9;UBERON:0004700,2.71e-08,9;UBERON:0001917,2.71e-08,9;UBERON:0002465,5.30e-07,10 | |||
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| ||
|short_description=p3@RAB35 | |||
}} | }} |
Latest revision as of 19:17, 16 September 2015
Short description: | p3@RAB35 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAB35_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_ENST00000538903_5end |
EntrezGene: | RAB35 |
HGNC: | 9774 |
UniProt: | F5H157 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 8.48e-21 | 36 |
endothelial cell of vascular tree | 3.12e-18 | 24 |
meso-epithelial cell | 4.78e-18 | 45 |
myeloid leukocyte | 9.59e-17 | 72 |
lining cell | 2.93e-16 | 58 |
barrier cell | 2.93e-16 | 58 |
defensive cell | 5.09e-15 | 48 |
phagocyte | 5.09e-15 | 48 |
monopoietic cell | 8.93e-15 | 59 |
monocyte | 8.93e-15 | 59 |
monoblast | 8.93e-15 | 59 |
promonocyte | 8.93e-15 | 59 |
macrophage dendritic cell progenitor | 1.18e-14 | 61 |
granulocyte monocyte progenitor cell | 2.78e-14 | 67 |
blood vessel endothelial cell | 5.54e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.54e-14 | 18 |
myeloid lineage restricted progenitor cell | 7.42e-14 | 66 |
mesodermal cell | 2.58e-13 | 121 |
classical monocyte | 3.41e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.41e-13 | 42 |
myeloid cell | 1.17e-09 | 108 |
common myeloid progenitor | 1.17e-09 | 108 |
endothelial cell of artery | 2.71e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 4.32e-29 | 203 |
immune system | 1.25e-17 | 93 |
hemolymphoid system | 1.56e-17 | 108 |
mesoderm | 2.10e-17 | 315 |
mesoderm-derived structure | 2.10e-17 | 315 |
presumptive mesoderm | 2.10e-17 | 315 |
vessel | 4.92e-14 | 68 |
blood vessel endothelium | 5.54e-14 | 18 |
endothelium | 5.54e-14 | 18 |
cardiovascular system endothelium | 5.54e-14 | 18 |
cardiovascular system | 7.38e-14 | 109 |
splanchnic layer of lateral plate mesoderm | 8.21e-14 | 83 |
bone marrow | 8.21e-14 | 76 |
hematopoietic system | 3.87e-13 | 98 |
blood island | 3.87e-13 | 98 |
circulatory system | 8.53e-13 | 112 |
simple squamous epithelium | 1.05e-12 | 22 |
bone element | 5.26e-12 | 82 |
skeletal element | 6.17e-12 | 90 |
vasculature | 2.26e-11 | 78 |
vascular system | 2.26e-11 | 78 |
squamous epithelium | 1.07e-10 | 25 |
epithelial tube open at both ends | 1.96e-10 | 59 |
blood vessel | 1.96e-10 | 59 |
blood vasculature | 1.96e-10 | 59 |
vascular cord | 1.96e-10 | 59 |
musculoskeletal system | 2.02e-09 | 167 |
skeletal system | 2.07e-09 | 100 |
epithelial tube | 4.35e-09 | 117 |
endothelial tube | 2.71e-08 | 9 |
arterial system endothelium | 2.71e-08 | 9 |
endothelium of artery | 2.71e-08 | 9 |
lymphoid system | 5.30e-07 | 10 |