FFCP PHASE1:Hg19::chr16:55542976..55543003,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:55542976..55543003,+
|short_description=p1@LPCAT2
|description=CAGE_peak_1_at_LPCAT2_5end
|association_with_transcript=63bp_to_NM_017839,uc002eie.3_5end
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54947 | |EntrezGene=54947 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26032 | |HGNC=26032 | ||
|TSSclassifier=strong | |||
|UniProt=Q7L5N7 | |UniProt=Q7L5N7 | ||
|association_with_transcript=63bp_to_NM_017839,uc002eie.3_5end | |||
|cluster_id=chr16:55542976..55543003,+ | |||
|coexpression_cluster_id=C3571 | |||
|description=CAGE_peak_1_at_LPCAT2_5end | |||
|id=chr16:55542976..55543003,+ | |||
|ontology_enrichment_celltype=CL:0000766!5.33e-31!76;CL:0000763!1.85e-30!112;CL:0000049!1.85e-30!112;CL:0000557!9.60e-27!71;CL:0000839!3.39e-25!70;CL:0002009!9.59e-24!65;CL:0002194!4.91e-23!63;CL:0000576!4.91e-23!63;CL:0000040!4.91e-23!63;CL:0000559!4.91e-23!63;CL:0002057!3.13e-20!42;CL:0000860!2.16e-17!45 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.63e-15;39!CL:0000234;8.63e-15;39!CL:0000766;1.64e-14;69!CL:0000860;2.92e-14;33!CL:0002057;2.92e-14;33!CL:0000576;2.47e-13;48!CL:0000763;1.59e-10;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.69e-33,72;CL:0000763,2.85e-32,108;CL:0000049,2.85e-32,108;CL:0000557,4.39e-29,67;CL:0000839,1.90e-27,66;CL:0002009,5.00e-26,61;CL:0002194,2.54e-25,59;CL:0000576,2.54e-25,59;CL:0000040,2.54e-25,59;CL:0000559,2.54e-25,59;CL:0000473,1.01e-23,48;CL:0000234,1.01e-23,48;CL:0000860,2.91e-20,42;CL:0002057,2.91e-20,42 | |||
|ontology_enrichment_development_v019=CL:0002057;1.08e-14;42!CL:0000049;2.35e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.07e-22!102;UBERON:0003061!3.07e-22!102;UBERON:0002193!8.37e-22!112;UBERON:0002371!1.64e-21!80;UBERON:0003081!1.96e-20!216;UBERON:0001474!2.45e-17!86;UBERON:0000467!2.40e-15!625;UBERON:0000480!5.09e-15!626;UBERON:0002405!9.42e-15!115;UBERON:0004765!1.19e-14!101;UBERON:0001434!1.19e-14!101;UBERON:0000468!2.27e-12!659;UBERON:0000062!3.23e-10!511;UBERON:0002050!4.19e-10!605;UBERON:0005423!4.19e-10!605;UBERON:0000923!5.39e-10!604;UBERON:0005291!5.39e-10!604;UBERON:0006598!5.39e-10!604;UBERON:0002532!5.39e-10!604;UBERON:0007023!8.94e-10!115;UBERON:0000922!1.40e-09!612;UBERON:0002204!4.01e-08!167;UBERON:0000926!2.16e-07!448;UBERON:0004120!2.16e-07!448;UBERON:0006603!2.16e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.16e-24,203;UBERON:0002390,7.11e-24,98;UBERON:0003061,7.11e-24,98;UBERON:0002193,2.45e-23,108;UBERON:0002371,2.58e-23,76;UBERON:0002405,1.39e-19,93;UBERON:0001474,7.99e-19,82;UBERON:0004765,1.89e-16,90;UBERON:0002050,5.46e-15,564;UBERON:0001434,5.00e-14,100;UBERON:0000923,6.25e-14,560;UBERON:0010316,6.25e-14,560;UBERON:0005291,6.25e-14,560;UBERON:0006598,6.25e-14,560;UBERON:0010317,6.25e-14,560;UBERON:0002532,6.25e-14,560;UBERON:0000926,1.16e-13,315;UBERON:0004120,1.16e-13,315;UBERON:0006603,1.16e-13,315;UBERON:0005423,1.00e-12,581;UBERON:0000922,3.82e-12,592;UBERON:0007023,1.50e-09,114;UBERON:0002204,2.08e-07,167 | |||
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| ||
|short_description=p1@LPCAT2 | |||
}} | }} |
Latest revision as of 00:27, 17 September 2015
Short description: | p1@LPCAT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LPCAT2_5end |
Coexpression cluster: | C3571_Neutrophils_Mast_CD14_Eosinophils_Dendritic_thyroid_Prostate |
Association with transcript: | 63bp_to_NM_017839, uc002eie.3_5end |
EntrezGene: | LPCAT2 |
HGNC: | 26032 |
UniProt: | Q7L5N7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.69e-33 | 72 |
myeloid cell | 2.85e-32 | 108 |
common myeloid progenitor | 2.85e-32 | 108 |
granulocyte monocyte progenitor cell | 4.39e-29 | 67 |
myeloid lineage restricted progenitor cell | 1.90e-27 | 66 |
macrophage dendritic cell progenitor | 5.00e-26 | 61 |
monopoietic cell | 2.54e-25 | 59 |
monocyte | 2.54e-25 | 59 |
monoblast | 2.54e-25 | 59 |
promonocyte | 2.54e-25 | 59 |
defensive cell | 1.01e-23 | 48 |
phagocyte | 1.01e-23 | 48 |
classical monocyte | 2.91e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.91e-20 | 42 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.16e-24 | 203 |
hematopoietic system | 7.11e-24 | 98 |
blood island | 7.11e-24 | 98 |
hemolymphoid system | 2.45e-23 | 108 |
bone marrow | 2.58e-23 | 76 |
immune system | 1.39e-19 | 93 |
bone element | 7.99e-19 | 82 |
skeletal element | 1.89e-16 | 90 |
embryonic structure | 5.46e-15 | 564 |
skeletal system | 5.00e-14 | 100 |
germ layer | 6.25e-14 | 560 |
germ layer / neural crest | 6.25e-14 | 560 |
embryonic tissue | 6.25e-14 | 560 |
presumptive structure | 6.25e-14 | 560 |
germ layer / neural crest derived structure | 6.25e-14 | 560 |
epiblast (generic) | 6.25e-14 | 560 |
mesoderm | 1.16e-13 | 315 |
mesoderm-derived structure | 1.16e-13 | 315 |
presumptive mesoderm | 1.16e-13 | 315 |
developing anatomical structure | 1.00e-12 | 581 |
embryo | 3.82e-12 | 592 |
adult organism | 1.50e-09 | 114 |
musculoskeletal system | 2.08e-07 | 167 |