FFCP PHASE1:Hg19::chr20:55926569..55926578,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8480 | |EntrezGene=8480 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9828 | |HGNC=9828 | ||
|TSSclassifier=strong | |||
|UniProt=B0QZ36 | |UniProt=B0QZ36 | ||
|association_with_transcript=3bp_to_ENST00000411894,ENST00000429339_5end | |association_with_transcript=3bp_to_ENST00000411894,ENST00000429339_5end | ||
|cluster_id=chr20:55926569..55926578,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_RAE1_5end | |description=CAGE_peak_3_at_RAE1_5end | ||
|id=chr20:55926569..55926578,+ | |id=chr20:55926569..55926578,+ | ||
|ontology_enrichment_celltype=CL:0000819!6.76e-07!1;CL:0000342!7.15e-07!1;CL:0002565!7.15e-07!1 | |ontology_enrichment_celltype=CL:0000819!6.76e-07!1;CL:0000342!7.15e-07!1;CL:0002565!7.15e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002595;3.35e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,3.22e-09,5 | |||
|ontology_enrichment_development_v019=UBERON:0008801;2.70e-40;1!UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10 | |||
|ontology_enrichment_disease=DOID:630!3.78e-07!1;DOID:0050177!3.78e-07!1;DOID:0050427!3.78e-07!1;DOID:0060073!6.76e-07!1;DOID:8675!6.76e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003135!2.62e-13!11;UBERON:0001829!6.62e-13!2;UBERON:0006947!9.08e-09!3;UBERON:0004054!9.08e-09!3;UBERON:0000200!1.62e-08!6;UBERON:0001831!2.66e-07!1;UBERON:0001567!2.66e-07!1;UBERON:0008801!2.66e-07!1;UBERON:0001736!2.82e-07!1;UBERON:0006298!2.82e-07!1;UBERON:0000473!3.06e-07!8;UBERON:0001301!3.17e-07!1;UBERON:0000989!3.36e-07!1;UBERON:0008811!3.36e-07!1;UBERON:0006258!3.36e-07!1;UBERON:0005876!3.36e-07!1;UBERON:0004874!3.36e-07!1;UBERON:0000998!3.57e-07!1;UBERON:0006868!3.57e-07!1;UBERON:0002506!7.15e-07!1;UBERON:0001769!7.15e-07!1;UBERON:0005904!9.01e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001831;2.70e-40;1!UBERON:0001567;2.70e-40;1!UBERON:0001829;6.30e-21;2!UBERON:0004089;6.30e-21;2!UBERON:0000473;6.64e-21;8!UBERON:0003135;1.62e-15;11!UBERON:0003834;3.35e-09;5!UBERON:0001533;3.35e-09;5!UBERON:0000991;1.27e-08;21!UBERON:0003101;2.82e-08;22!UBERON:0000079;2.82e-08;22!UBERON:0001044;7.01e-08;6!UBERON:0003293;7.01e-08;6!UBERON:0003294;7.01e-08;6!UBERON:0010047;7.01e-08;6!UBERON:0003408;7.01e-08;6!UBERON:0000167;7.01e-08;6!UBERON:0003513;6.21e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001831,3.30e-40,1;UBERON:0001567,3.30e-40,1;UBERON:0008801,3.30e-40,1;UBERON:0000473,6.64e-21,8;UBERON:0001829,6.96e-21,2;UBERON:0004089,6.96e-21,2;UBERON:0003135,1.62e-15,11;UBERON:0003834,3.22e-09,5;UBERON:0001533,3.22e-09,5;UBERON:0000991,1.27e-08,21;UBERON:0009196,1.27e-08,21;UBERON:0009117,1.27e-08,21;UBERON:0005564,1.27e-08,21;UBERON:0004176,2.82e-08,22;UBERON:0003101,2.82e-08,22;UBERON:0000079,2.82e-08,22;UBERON:0001044,7.25e-08,6;UBERON:0003293,7.25e-08,6;UBERON:0003294,7.25e-08,6;UBERON:0010047,7.25e-08,6;UBERON:0000167,7.25e-08,6;UBERON:0003513,6.04e-07,7 | |||
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|short_description=p3@RAE1 | |short_description=p3@RAE1 | ||
}} | }} |
Latest revision as of 04:04, 17 September 2015
Short description: | p3@RAE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAE1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 3bp_to_ENST00000411894, ENST00000429339_5end |
EntrezGene: | RAE1 |
HGNC: | 9828 |
UniProt: | B0QZ36 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 3.22e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
parotid gland | 3.30e-40 | 1 |
cheek | 3.30e-40 | 1 |
parotid gland primordium | 3.30e-40 | 1 |
testis | 6.64e-21 | 8 |
major salivary gland | 6.96e-21 | 2 |
midface | 6.96e-21 | 2 |
male reproductive organ | 1.62e-15 | 11 |
thoracic segment blood vessel | 3.22e-09 | 5 |
subclavian artery | 3.22e-09 | 5 |
gonad | 1.27e-08 | 21 |
indifferent external genitalia | 1.27e-08 | 21 |
indifferent gonad | 1.27e-08 | 21 |
gonad primordium | 1.27e-08 | 21 |
external genitalia | 2.82e-08 | 22 |
male organism | 2.82e-08 | 22 |
male reproductive system | 2.82e-08 | 22 |
saliva-secreting gland | 7.25e-08 | 6 |
gland of oral region | 7.25e-08 | 6 |
gland of foregut | 7.25e-08 | 6 |
oral gland | 7.25e-08 | 6 |
oral cavity | 7.25e-08 | 6 |
trunk blood vessel | 6.04e-07 | 7 |