FFCP PHASE1:Hg19::chr12:129308487..129308588,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:129308487..129308588,- to FFCP PHASE1:Hg19::chr12:129308487..129308588,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=121260 | |EntrezGene=121260 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23090 | |HGNC=23090 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N697 | |UniProt=Q8N697 | ||
|association_with_transcript=0bp_to_ENST00000266771,NM_145648,uc001uhu.2,uc001uhv.2_5end | |||
|cluster_id=chr12:129308487..129308588,- | |||
|coexpression_cluster_id=C1662 | |||
|description=CAGE_peak_1_at_SLC15A4_5end | |||
|id=chr12:129308487..129308588,- | |||
|ontology_enrichment_celltype=CL:0002371!3.69e-16!591;CL:0000144!1.02e-14!625;CL:0000738!1.76e-14!140;CL:0002087!2.88e-12!119;CL:0002057!1.74e-10!42;CL:0002009!2.09e-10!65;CL:0000034!3.09e-10!444;CL:0002320!3.99e-10!365;CL:0000766!4.46e-10!76;CL:0002194!4.52e-10!63;CL:0000576!4.52e-10!63;CL:0000040!4.52e-10!63;CL:0000559!4.52e-10!63;CL:0000723!6.93e-10!436;CL:0000048!1.62e-09!430;CL:0000134!4.60e-09!358;CL:0002031!1.08e-08!124;CL:0000860!2.38e-08!45;CL:0000219!3.52e-08!390;CL:0000012!5.25e-08!682;CL:0000557!7.79e-08!71;CL:0000548!9.88e-08!679;CL:0000004!9.88e-08!679;CL:0000255!9.88e-08!679;CL:0000945!1.34e-07!24;CL:0000826!1.34e-07!24;CL:0000003!7.14e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.76e-08;39!CL:0000234;2.76e-08;39!CL:0000945;8.29e-08;24!CL:0000860;1.24e-07;33!CL:0002057;1.24e-07;33!CL:0000576;2.41e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,8.35e-16,136;CL:0002087,1.41e-13,115;CL:0000473,1.68e-12,48;CL:0000234,1.68e-12,48;CL:0002009,3.69e-12,61;CL:0002194,8.03e-12,59;CL:0000576,8.03e-12,59;CL:0000040,8.03e-12,59;CL:0000559,8.03e-12,59;CL:0000766,1.30e-11,72;CL:0000034,3.57e-11,441;CL:0002320,5.05e-11,361;CL:0000723,8.29e-11,433;CL:0000860,1.74e-10,42;CL:0002057,1.74e-10,42;CL:0000048,2.02e-10,427;CL:0000134,6.55e-10,354;CL:0002031,1.06e-09,120;CL:0000557,3.57e-09,67;CL:0000219,5.89e-09,386;CL:0000945,1.34e-07,24;CL:0000826,1.34e-07,24;CL:0000839,3.18e-07,66;CL:0000988,4.27e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;5.90e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.41e-12!102;UBERON:0003061!1.41e-12!102;UBERON:0003081!2.16e-12!216;UBERON:0002193!2.67e-12!112;UBERON:0002384!3.12e-09!375;UBERON:0002405!1.57e-08!115;UBERON:0002371!5.19e-08!80 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.73e-14,98;UBERON:0003061,4.73e-14,98;UBERON:0002193,1.15e-13,108;UBERON:0003081,5.97e-11,203;UBERON:0002384,4.47e-10,371;UBERON:0002405,8.86e-10,93;UBERON:0000926,1.39e-09,315;UBERON:0004120,1.39e-09,315;UBERON:0006603,1.39e-09,315;UBERON:0002371,2.88e-09,76;UBERON:0000479,4.57e-08,773;UBERON:0002204,1.71e-07,167;UBERON:0004765,2.18e-07,90;UBERON:0001474,4.24e-07,82 | |||
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| ||
|short_description=p1@SLC15A4 | |||
}} | }} |
Latest revision as of 07:46, 17 September 2015
Short description: | p1@SLC15A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC15A4_5end |
Coexpression cluster: | C1662_Eosinophils_Dendritic_Neutrophils_Whole_renal_splenic_giant |
Association with transcript: | 0bp_to_ENST00000266771, NM_145648, uc001uhu.2, uc001uhv.2_5end |
EntrezGene: | SLC15A4 |
HGNC: | 23090 |
UniProt: | Q8N697 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 8.35e-16 | 136 |
nongranular leukocyte | 1.41e-13 | 115 |
defensive cell | 1.68e-12 | 48 |
phagocyte | 1.68e-12 | 48 |
macrophage dendritic cell progenitor | 3.69e-12 | 61 |
monopoietic cell | 8.03e-12 | 59 |
monocyte | 8.03e-12 | 59 |
monoblast | 8.03e-12 | 59 |
promonocyte | 8.03e-12 | 59 |
myeloid leukocyte | 1.30e-11 | 72 |
stem cell | 3.57e-11 | 441 |
connective tissue cell | 5.05e-11 | 361 |
somatic stem cell | 8.29e-11 | 433 |
classical monocyte | 1.74e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.74e-10 | 42 |
multi fate stem cell | 2.02e-10 | 427 |
mesenchymal cell | 6.55e-10 | 354 |
hematopoietic lineage restricted progenitor cell | 1.06e-09 | 120 |
granulocyte monocyte progenitor cell | 3.57e-09 | 67 |
motile cell | 5.89e-09 | 386 |
lymphocyte of B lineage | 1.34e-07 | 24 |
pro-B cell | 1.34e-07 | 24 |
myeloid lineage restricted progenitor cell | 3.18e-07 | 66 |
hematopoietic cell | 4.27e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.73e-14 | 98 |
blood island | 4.73e-14 | 98 |
hemolymphoid system | 1.15e-13 | 108 |
lateral plate mesoderm | 5.97e-11 | 203 |
connective tissue | 4.47e-10 | 371 |
immune system | 8.86e-10 | 93 |
mesoderm | 1.39e-09 | 315 |
mesoderm-derived structure | 1.39e-09 | 315 |
presumptive mesoderm | 1.39e-09 | 315 |
bone marrow | 2.88e-09 | 76 |
tissue | 4.57e-08 | 773 |
musculoskeletal system | 1.71e-07 | 167 |
skeletal element | 2.18e-07 | 90 |
bone element | 4.24e-07 | 82 |