FFCP PHASE1:Hg19::chr9:4299959..4299974,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:4299959..4299974,-
|short_description=p4@GLIS3
|description=CAGE_peak_4_at_GLIS3_5end
|association_with_transcript=-43bp_to_ENST00000381971,ENST00000465708...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=169792 | |EntrezGene=169792 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28510 | |HGNC=28510 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NEA6,Q1PHJ8 | |UniProt=Q8NEA6,Q1PHJ8 | ||
|association_with_transcript=-43bp_to_ENST00000381971,ENST00000465708,ENST00000477901_5end | |||
|cluster_id=chr9:4299959..4299974,- | |||
|coexpression_cluster_id=C2945 | |||
|description=CAGE_peak_4_at_GLIS3_5end | |||
|id=chr9:4299959..4299974,- | |||
|ontology_enrichment_celltype=CL:0000055!5.44e-11!180;CL:0000187!2.90e-07!54;CL:0000183!2.95e-07!59;CL:0000680!6.57e-07!57;CL:0000056!6.57e-07!57;CL:0000355!6.57e-07!57 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!3.21e-19!659;UBERON:0000467!1.39e-18!625;UBERON:0000480!2.65e-18!626;UBERON:0000062!7.40e-17!511;UBERON:0002050!6.82e-16!605;UBERON:0005423!6.82e-16!605;UBERON:0000025!1.32e-15!194;UBERON:0000922!1.42e-15!612;UBERON:0000923!1.98e-15!604;UBERON:0005291!1.98e-15!604;UBERON:0006598!1.98e-15!604;UBERON:0002532!1.98e-15!604;UBERON:0004111!4.64e-15!241;UBERON:0000477!1.97e-14!286;UBERON:0000475!4.08e-13!365;UBERON:0000481!1.10e-12!347;UBERON:0000483!1.27e-12!309;UBERON:0000119!1.99e-12!312;UBERON:0005743!1.83e-09!86;UBERON:0001017!2.19e-09!82;UBERON:0001049!4.58e-09!57;UBERON:0005068!4.58e-09!57;UBERON:0006241!4.58e-09!57;UBERON:0007135!4.58e-09!57;UBERON:0000955!6.65e-09!69;UBERON:0006238!6.65e-09!69;UBERON:0000926!7.16e-09!448;UBERON:0004120!7.16e-09!448;UBERON:0006603!7.16e-09!448;UBERON:0003075!1.40e-08!86;UBERON:0007284!1.40e-08!86;UBERON:0003914!2.01e-08!118;UBERON:0005256!3.37e-08!143;UBERON:0002616!4.27e-08!59;UBERON:0007023!4.49e-08!115;UBERON:0002100!7.48e-08!216;UBERON:0002346!2.49e-07!90;UBERON:0000073!5.53e-07!94;UBERON:0001016!5.53e-07!94;UBERON:0002780!8.72e-07!41;UBERON:0001890!8.72e-07!41;UBERON:0006240!8.72e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000025,4.11e-12,192;UBERON:0005423,1.04e-10,581;UBERON:0004111,1.24e-10,240;UBERON:0000922,2.16e-10,592;UBERON:0000483,2.69e-10,306;UBERON:0000119,4.18e-10,309;UBERON:0000923,1.22e-08,560;UBERON:0010316,1.22e-08,560;UBERON:0005291,1.22e-08,560;UBERON:0006598,1.22e-08,560;UBERON:0010317,1.22e-08,560;UBERON:0002532,1.22e-08,560;UBERON:0002050,1.29e-08,564;UBERON:0001049,2.14e-08,56;UBERON:0005068,2.14e-08,56;UBERON:0006241,2.14e-08,56;UBERON:0007135,2.14e-08,56;UBERON:0001017,2.67e-08,81;UBERON:0003075,4.45e-08,82;UBERON:0007284,4.45e-08,82;UBERON:0000955,2.79e-07,68;UBERON:0006238,2.79e-07,68;UBERON:0003104,3.43e-07,160;UBERON:0009142,3.43e-07,160;UBERON:0000073,3.65e-07,53;UBERON:0002616,3.65e-07,53;UBERON:0002346,5.01e-07,86;UBERON:0010314,6.07e-07,132 | |||
|phase1_expression=0.181678379270557,0.428201047781966,1.12763523276777,2.00146596706261,1.34088328328186,1.74467704820074,0,1.26343974685366,0.783556884599516,1.47440361900905,0.697801167972428,1.09220686065086,0.263766978228454,1.48519623552056,1.32558950291166,0.672325146451775,2.41077811209591,1.46062018077475,0.975865597581014,1.35433163884467,1.83600622119828,2.19418305034661,5.43848375549008,6.15934912827979,5.14724822338691,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0.553995408531877,1.60435557976113,1.30206522429511,0.671746422719773,0.32389366601898,0.515151135268373,1.16318591023652,2.26725566213286,2.42584061187816,0.697287110717054,4.93401465626191,3.09706370895104,2.01384674625505,3.33008918487831,3.31075121844019,1.03423704220986,0.645484683583826,2.70852973188684,1.31769637679823,3.27487380069415,2.47195832889593,0.612167784741805,3.85114832491312,0,1.31940520074686,3.59034583718937,2.98357325372886,0.580418477257168,2.26954089876456,2.4912889959823,4.27122730936464,8.34372669472322,3.69221035998698,0,3.68277635987565,1.58231193720442,0,0.850417199860174,0.209658645508376,0,0.300353785683013,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0.25618263945135,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0.236777252044017,0,0,0,0,2.43806866313962,1.34140171940727,0.895037932904712,0,4.01070328508712,3.47631645505977,0.795285947051099,4.86634870302636,2.55244006342983,4.21285855178871,3.07421749925941,2.75056058545197,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0.258416759169329,0.35576626268671,0.66944122552934,2.01414658554573,1.52054421143703,2.92874469057803,0,0.81014194788176,0.892997282840798,0.673588117878509,0.450445921933289,0,0,0.183201743930407,0,0,0,0.993943903390637,1.2663051166458,5.42877641334197,2.58152958673932,0.709336764396714,3.36406560085384,5.33744978648525,2.4666754841716,6.22422070799533,1.88594940897563,2.12500474047496,0.454072282934794,0.576175924479999,1.40592859100278,0.624320153660641,0,0.448346041655403,0.469737994575059,1.29498355494505,1.26405726032024,0.816616685019573,0.982674538494144,0.826606249406124,1.18800285728205,2.47266929278557,1.82032272387605,2.15585442544872,0.168336113954066,1.00094815897571,1.10825646193673,0.438977620880838,0.612975591598039,0.901428353439581,0.226864366320042,1.25572744982203,0.640672166455702,1.48352330811693,0.600182192168805,0.515262646192195,2.31876486041066,0.37223371266318,3.20675031258406,0.876933046450788,3.02920529092937,1.10459878370759,0.484938170456436,4.61512470271599,0.403008392910561,0,0,0,0,0,0,0,0.414644220061482,0,0,0,0.643240938192885,0,0.464367928031979,2.88751792667834,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.8231480226628,1.47008711385542,1.26755034821831,5.89696330006576,1.77236972004421,0,0.122988438543114,0.686271241194102,0.109750285408626,0,0,0.0925884451585296,0,2.07986957055916,1.44331342025273,2.43453850447661,1.05667824812239,1.58803092537181,0.462985512576611,2.85381228351897,0,0,0.246217006087397,0,0.445893486866185,0,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0,1.86595303986695,4.4677185559258,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0.336393253036082,1.30788020649984,0,1.80980402060889,0,0,2.39344304926383,2.08014873822732,0,0,0,2.85955987316295,0.542621605391443,0,1.30294473717494,1.77695974371273,0.791951872933429,1.20575750823834,0,2.99918973546171,0,0,0,2.15662369942424,1.14861935834114,1.42636905040718,0.579125226670317,1.64381058040307,0,0,0,0,0,1.77866236955724,1.30139853857622,3.86644406388848,0.167516265334349,1.27587750330633,0.749007023947182,0,0.414415513436035,1.59498939234882,3.00102312635806,1.62759014219841,3.53550464602372,1.07057393278297,1.10391690523754,2.6942525448324,0.902838299183157,0,3.10419213877515,0.664225598535437,1.29058417979192,1.21637060255316,0,1.02943027143257,0,0.431428401637234,0,0.606255142892519,0,0.907170879989041,0.496215615637554,2.14846762603287,0.561320188866147,1.66580894032411,0.511707249066704,1.12597744800525,1.48418066444991,0.462629081407967,0.532685175939381,0.492762936082855,0.519254429183621,0.697262270759755,0,0.200506470303285,0.0920809889358963,0.34444334449382,0.910455840033585,2.49136388422906,1.35359883872224,1.5403067420883,3.92174884588428,0,3.16654886678627,1.13733384070897,0.170093705276516,1.0795795805107,0,1.89662506280697,4.51520796469368,0.764628819135115,0,4.25362033972139,0,0,0.256450125116389,0.328014645699706,1.30151357865721,2.67906630284078,0.54941678891006,0.495056999523528,0,0,0,0.773365746336976,1.69453478826109,2.14905144616581,1.65403886981437,2.90034661144339,2.90033387828457,1.27839941124151,0.267096106940212,0,0.384380134730212,0.255225424989168,0.2023155617111,0.464845549297286,1.5740617341532,0.6970372701606,1.54016790088044,0.532306030317022,0.869932992075073,2.22389062924704,2.00374841438788,1.116475108079,0.949138274156178,2.66882271493355,1.79128453917934,1.71175595213568,0.636406495851874,3.92474320099615,3.5974491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|phase1_expression=0.181678379270557,0.428201047781966,1.12763523276777,2.00146596706261,1.34088328328186,1.74467704820074,0,1.26343974685366,0.783556884599516,1.47440361900905,0.697801167972428,1.09220686065086,0.263766978228454,1.48519623552056,1.32558950291166,0.672325146451775,2.41077811209591,1.46062018077475,0.975865597581014,1.35433163884467,1.83600622119828,2.19418305034661,5.43848375549008,6.15934912827979,5.14724822338691,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0.553995408531877,1.60435557976113,1.30206522429511,0.671746422719773,0.32389366601898,0.515151135268373,1.16318591023652,2.26725566213286,2.42584061187816,0.697287110717054,4.93401465626191,3.09706370895104,2.01384674625505,3.33008918487831,3.31075121844019,1.03423704220986,0.645484683583826,2.70852973188684,1.31769637679823,3.27487380069415,2.47195832889593,0.612167784741805,3.85114832491312,0,1.31940520074686,3.59034583718937,2.98357325372886,0.580418477257168,2.26954089876456,2.4912889959823,4.27122730936464,8.34372669472322,3.69221035998698,0,3.68277635987565,1.58231193720442,0,0.850417199860174,0.209658645508376,0,0.300353785683013,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0.25618263945135,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0.236777252044017,0,0,0,0,2.43806866313962,1.34140171940727,0.895037932904712,0,4.01070328508712,3.47631645505977,0.795285947051099,4.86634870302636,2.55244006342983,4.21285855178871,3.07421749925941,2.75056058545197,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0.258416759169329,0.35576626268671,0.66944122552934,2.01414658554573,1.52054421143703,2.92874469057803,0,0.81014194788176,0.892997282840798,0.673588117878509,0.450445921933289,0,0,0.183201743930407,0,0,0,0.993943903390637,1.2663051166458,5.42877641334197,2.58152958673932,0.709336764396714,3.36406560085384,5.33744978648525,2.4666754841716,6.22422070799533,1.88594940897563,2.12500474047496,0.454072282934794,0.576175924479999,1.40592859100278,0.624320153660641,0,0.448346041655403,0.469737994575059,1.29498355494505,1.26405726032024,0.816616685019573,0.982674538494144,0.826606249406124,1.18800285728205,2.47266929278557,1.82032272387605,2.15585442544872,0.168336113954066,1.00094815897571,1.10825646193673,0.438977620880838,0.612975591598039,0.901428353439581,0.226864366320042,1.25572744982203,0.640672166455702,1.48352330811693,0.600182192168805,0.515262646192195,2.31876486041066,0.37223371266318,3.20675031258406,0.876933046450788,3.02920529092937,1.10459878370759,0.484938170456436,4.61512470271599,0.403008392910561,0,0,0,0,0,0,0,0.414644220061482,0,0,0,0.643240938192885,0,0.464367928031979,2.88751792667834,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.8231480226628,1.47008711385542,1.26755034821831,5.89696330006576,1.77236972004421,0,0.122988438543114,0.686271241194102,0.109750285408626,0,0,0.0925884451585296,0,2.07986957055916,1.44331342025273,2.43453850447661,1.05667824812239,1.58803092537181,0.462985512576611,2.85381228351897,0,0,0.246217006087397,0,0.445893486866185,0,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0,1.86595303986695,4.4677185559258,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0.336393253036082,1.30788020649984,0,1.80980402060889,0,0,2.39344304926383,2.08014873822732,0,0,0,2.85955987316295,0.542621605391443,0,1.30294473717494,1.77695974371273,0.791951872933429,1.20575750823834,0,2.99918973546171,0,0,0,2.15662369942424,1.14861935834114,1.42636905040718,0.579125226670317,1.64381058040307,0,0,0,0,0,1.77866236955724,1.30139853857622,3.86644406388848,0.167516265334349,1.27587750330633,0.749007023947182,0,0.414415513436035,1.59498939234882,3.00102312635806,1.62759014219841,3.53550464602372,1.07057393278297,1.10391690523754,2.6942525448324,0.902838299183157,0,3.10419213877515,0.664225598535437,1.29058417979192,1.21637060255316,0,1.02943027143257,0,0.431428401637234,0,0.606255142892519,0,0.907170879989041,0.496215615637554,2.14846762603287,0.561320188866147,1.66580894032411,0.511707249066704,1.12597744800525,1.48418066444991,0.462629081407967,0.532685175939381,0.492762936082855,0.519254429183621,0.697262270759755,0,0.200506470303285,0.0920809889358963,0.34444334449382,0.910455840033585,2.49136388422906,1.35359883872224,1.5403067420883,3.92174884588428,0,3.16654886678627,1.13733384070897,0.170093705276516,1.0795795805107,0,1.89662506280697,4.51520796469368,0.764628819135115,0,4.25362033972139,0,0,0.256450125116389,0.328014645699706,1.30151357865721,2.67906630284078,0.54941678891006,0.495056999523528,0,0,0,0.773365746336976,1.69453478826109,2.14905144616581,1.65403886981437,2.90034661144339,2.90033387828457,1.27839941124151,0.267096106940212,0,0.384380134730212,0.255225424989168,0.2023155617111,0.464845549297286,1.5740617341532,0.6970372701606,1.54016790088044,0.532306030317022,0.869932992075073,2.22389062924704,2.00374841438788,1.116475108079,0.949138274156178,2.66882271493355,1.79128453917934,1.71175595213568,0.636406495851874,3.92474320099615,3.5974491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| ||
|short_description=p4@GLIS3 | |||
}} | }} |
Latest revision as of 12:19, 17 September 2015
Short description: | p4@GLIS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GLIS3_5end |
Coexpression cluster: | C2945_seminal_extraskeletal_leiomyoblastoma_thyroid_spinal_serous_ductus |
Association with transcript: | -43bp_to_ENST00000381971, ENST00000465708, ENST00000477901_5end |
EntrezGene: | GLIS3 |
HGNC: | 28510 |
UniProt: | Q8NEA6Q1PHJ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
tube | 4.11e-12 | 192 |
developing anatomical structure | 1.04e-10 | 581 |
anatomical conduit | 1.24e-10 | 240 |
embryo | 2.16e-10 | 592 |
epithelium | 2.69e-10 | 306 |
cell layer | 4.18e-10 | 309 |
germ layer | 1.22e-08 | 560 |
germ layer / neural crest | 1.22e-08 | 560 |
embryonic tissue | 1.22e-08 | 560 |
presumptive structure | 1.22e-08 | 560 |
germ layer / neural crest derived structure | 1.22e-08 | 560 |
epiblast (generic) | 1.22e-08 | 560 |
embryonic structure | 1.29e-08 | 564 |
neural tube | 2.14e-08 | 56 |
neural rod | 2.14e-08 | 56 |
future spinal cord | 2.14e-08 | 56 |
neural keel | 2.14e-08 | 56 |
central nervous system | 2.67e-08 | 81 |
neural plate | 4.45e-08 | 82 |
presumptive neural plate | 4.45e-08 | 82 |
brain | 2.79e-07 | 68 |
future brain | 2.79e-07 | 68 |
mesenchyme | 3.43e-07 | 160 |
entire embryonic mesenchyme | 3.43e-07 | 160 |
regional part of nervous system | 3.65e-07 | 53 |
regional part of brain | 3.65e-07 | 53 |
neurectoderm | 5.01e-07 | 86 |
structure with developmental contribution from neural crest | 6.07e-07 | 132 |