FFCP PHASE1:Hg19::chr2:55278397..55278414,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:55278397..55278414,- to FFCP PHASE1:Hg19::chr2:55278397..55278414,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-433bp_to_ENST00000404909_5end | |||
|cluster_id=chr2:55278397..55278414,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_23_at_RTN4_5end | |||
|id=chr2:55278397..55278414,- | |||
|ontology_enrichment_celltype=CL:0000860!1.05e-25!45;CL:0002057!1.27e-25!42;CL:0000557!5.40e-20!71;CL:0002009!1.13e-18!65;CL:0000766!1.71e-18!76;CL:0000839!5.07e-18!70;CL:0002194!2.99e-17!63;CL:0000576!2.99e-17!63;CL:0000040!2.99e-17!63;CL:0000559!2.99e-17!63;CL:0000012!5.01e-13!682;CL:0000548!7.12e-13!679;CL:0000004!7.12e-13!679;CL:0000255!7.12e-13!679;CL:0000763!1.06e-12!112;CL:0000049!1.06e-12!112;CL:0000063!2.80e-09!578;CL:0002371!2.89e-09!591;CL:0000144!5.78e-09!625;CL:0000003!6.83e-09!722;CL:0000738!1.12e-07!140;CL:0000723!3.04e-07!436;CL:0000034!3.11e-07!444;CL:0000048!3.33e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.83e-63;33!CL:0002057;4.83e-63;33!CL:0000473;1.35e-44;39!CL:0000234;1.35e-44;39!CL:0000576;1.45e-34;48!CL:0000766;1.55e-27;69!CL:0000763;3.90e-12;100!CL:0000767;2.34e-11;3!CL:0002087;5.46e-09;104!CL:0001014;2.28e-08;2!CL:0001016;2.28e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.04e-67,42;CL:0002057,2.04e-67,42;CL:0000473,5.01e-58,48;CL:0000234,5.01e-58,48;CL:0000557,2.73e-54,67;CL:0000766,3.17e-53,72;CL:0002009,5.73e-50,61;CL:0000839,2.54e-48,66;CL:0002194,6.94e-45,59;CL:0000576,6.94e-45,59;CL:0000040,6.94e-45,59;CL:0000559,6.94e-45,59;CL:0000763,2.97e-37,108;CL:0000049,2.97e-37,108;CL:0000738,9.25e-28,136;CL:0002031,1.01e-26,120;CL:0002032,4.56e-22,161;CL:0000837,4.56e-22,161;CL:0000037,8.88e-21,168;CL:0002087,1.41e-19,115;CL:0000988,2.86e-19,177;CL:0000134,4.39e-12,354;CL:0002320,1.20e-11,361;CL:0000767,1.32e-11,3;CL:0000048,2.67e-10,427;CL:0000219,4.19e-10,386;CL:0000723,5.27e-10,433;CL:0000034,1.27e-09,441;CL:0001014,2.17e-08,2;CL:0001016,2.17e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002057;4.76e-50;42!CL:0000049;1.61e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.76e-18!80;UBERON:0001474!1.17e-16!86;UBERON:0004765!1.16e-14!101;UBERON:0001434!1.16e-14!101;UBERON:0002390!3.48e-12!102;UBERON:0003061!3.48e-12!102;UBERON:0002204!5.18e-12!167;UBERON:0003081!9.29e-12!216;UBERON:0002193!1.28e-10!112;UBERON:0002405!1.24e-09!115;UBERON:0000926!1.49e-09!448;UBERON:0004120!1.49e-09!448;UBERON:0006603!1.49e-09!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.30e-47,76;UBERON:0001474,6.60e-43,82;UBERON:0004765,2.26e-38,90;UBERON:0002405,7.17e-37,93;UBERON:0002390,1.43e-34,98;UBERON:0003061,1.43e-34,98;UBERON:0001434,1.02e-33,100;UBERON:0002193,1.31e-30,108;UBERON:0003081,5.91e-23,203;UBERON:0002204,8.17e-21,167;UBERON:0000926,7.45e-14,315;UBERON:0004120,7.45e-14,315;UBERON:0006603,7.45e-14,315;UBERON:0002384,4.77e-11,371 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,2.53299878168311,0,0.261185628199839,0,0,0,0.263766978228454,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,3.93364276848904,2.68680578668049,1.85779347979291,0,0.6024118375565,0.739508020333575,0,0,0,2.76997704265939,2.80762226458198,3.68918480216948,0,0.32389366601898,0,0.436194716338694,0.377875943688809,0,3.25400651667958,2.46700732813095,4.64559556342655,7.48000220037591,4.61089271752381,5.67557351732605,12.7555901872549,4.51839278508678,5.41705946377367,1.50593871634084,0.818718450173537,2.02251136000576,9.48860066349798,9.30694178520671,8.31138263538754,1.31940520074686,1.39624560335142,1.27867425159808,7.54544020434318,1.13477044938228,3.11411124497787,3.76872997885115,4.69334626578181,5.2125322729228,3.63239701580021,2.57794345191295,3.16462387440884,0,0.425208599930087,0.209658645508376,0.561643155732475,0.450530678524519,0,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,2.43806866313962,0,0.12786256184353,0,0,0,0,0,0,0.221729397462564,0.175669571386252,0,0.364295288292542,0,0,0.348259474598534,0,0.238490624305342,0.571994910780128,0.371457501329565,0.993812036833525,0,0.347140501607594,0.56530794192401,0.419499436209906,0,0.417989933073621,0,0,0.33472061276467,0,0,0,0,0.81014194788176,0.17859945656816,0,0,1.53316637465883,2.84779697870439,0,0,0,0,0,0.379891534993739,1.58891016975863,0.573673241497627,0,0.560677600142307,1.06748995729705,0,0,0,0.163461903113459,0,0.576175924479999,0,0,0,0,0,0.161872944368132,0.280901613404497,0.204154171254893,0,0,1.18800285728205,0,0,0.718618141816238,0,0.125118519871964,0,0,0,0.150238058906597,0.113432183160021,0.538168907066586,0,0.211931901159562,0,0.103052529238439,0.772921620136887,0,0.506328996723799,0,0.504867548488229,0,0,1.06502877754984,0,0.169560592310488,0,0.545492241181669,0.286804595389004,0.243947412259191,0,0.116193942869518,0,0,0.36497735907583,0,0,0,0.464367928031979,1.44375896333917,0.118306800039844,0.168584690078102,0,0,0,0,0.134831308160164,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0.100528972411631,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0.179117045405697,0,0,0.492663237895943,0,1.03664057770386,1.44119953416961,1.00993946741104,0.190493682876507,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0.301439377059586,0,0,0,0.502257091432126,0,0,0,0,0.144781306667579,0,0,0,0,0,0.385029108839245,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0.24538298343828,0,0,0,0.356857977594324,0,0,0,0,0,0,0,0.173767228936166,0.195801157462741,0,0.620304078368662,0.647142602455851,0.213455115606889,0.606255142892519,1.66435439510497,0,0,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0.114814448164607,0,0,0,0.231046011313244,0,0,0,0,0.680374821106063,0.431831832204279,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0,0.0852266274161009,0,0.165284915360978,0,0.638063562472921,0,0,1.5740617341532,0,0,0.532306030317022,0.869932992075073,0.74129687641568,0.286249773483982,0.372158369359667,0.316379424718726,0,0,0,0.318203247925937,0.78494864019923,0.179872457583315,0.274537029736055,0,0.202182481573316,0,0,0,0,1.05650146756755,0,0,0,0.551365343546124,0,0,0,0,0.608731130888112,0.30982349809975,0.281695602532241,0.143411352204052,0.0982490410131212,0.35667105148125,0,0,0,0,0.349934720244983,0.384888450902048,1.34060455107157,3.26672954583968,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0.333926115068718,0,0,0.19924798825107,0,0,0.20453736500431,0,0,0.0898683511473268,0.358042349351218,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.278847488557207,0.153900517007594,0.113942055847001,0,0,0,0.638002319463839,0,0,0,0.156980256395025,0.166211681900156,0,0.19606253431774,0.167821586975843,0,0.158936578980379,0.210998064528027,0.652931232636591,0.141353071433941,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0.586993856796269,0,0,0,0,0.189559738885464,0.751617097072463,0,0.664653872707185,0.992975867626496,0.313932918407225,0,0.284609546029793,0.138674673013139,0,0.195984794828755,0.957651272384428,0,0.171986032471617,0.19351266257817,0.0730893170861856,0.0821154570532092,0,0.0882561266915003,0,0.137041924646751,0.19871461170299,0,0,0.480952921509202,0.213452994739353,0,0,0,0,0.864328787928898,0.99402028452346,0.471388069233591,0,0.104602846312333,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0.160753148465019,0.687697182986169,0.415440338029185,1.349843349309,11.6070293183692,0,0,0,0,0.211200673038813,0,0.38383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| ||
|short_description=p23@RTN4 | |||
}} | }} |
Latest revision as of 17:09, 17 September 2015
Short description: | p23@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_RTN4_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -433bp_to_ENST00000404909_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.30e-47 | 76 |
bone element | 6.60e-43 | 82 |
skeletal element | 2.26e-38 | 90 |
immune system | 7.17e-37 | 93 |
hematopoietic system | 1.43e-34 | 98 |
blood island | 1.43e-34 | 98 |
skeletal system | 1.02e-33 | 100 |
hemolymphoid system | 1.31e-30 | 108 |
lateral plate mesoderm | 5.91e-23 | 203 |
musculoskeletal system | 8.17e-21 | 167 |
mesoderm | 7.45e-14 | 315 |
mesoderm-derived structure | 7.45e-14 | 315 |
presumptive mesoderm | 7.45e-14 | 315 |
connective tissue | 4.77e-11 | 371 |