FFCP PHASE1:Hg19::chr7:21467642..21467671,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6671 | |EntrezGene=6671 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11209 | |HGNC=11209 | ||
|TSSclassifier=strong | |||
|UniProt=Q02446,C9JUS7,B4DKX0,F8WB93 | |UniProt=Q02446,C9JUS7,B4DKX0,F8WB93 | ||
|association_with_transcript=0bp_to_ENST00000222584,ENST00000432066,ENST00000446800,ENST00000448246_5end | |association_with_transcript=0bp_to_ENST00000222584,ENST00000432066,ENST00000446800,ENST00000448246_5end | ||
|cluster_id=chr7:21467642..21467671,+ | |||
|coexpression_cluster_id=C1055 | |||
|description=CAGE_peak_2_at_SP4_5end | |description=CAGE_peak_2_at_SP4_5end | ||
|id=chr7:21467642..21467671,+ | |id=chr7:21467642..21467671,+ | ||
|ontology_enrichment_celltype=CL:0000037!6.44e-24!172;CL:0000566!6.44e-24!172;CL:0000738!1.43e-22!140;CL:0002032!3.88e-21!165;CL:0000837!3.88e-21!165;CL:0000988!4.16e-21!182;CL:0000542!9.43e-19!53;CL:0000051!9.43e-19!53;CL:0000838!1.74e-18!52;CL:0002031!7.63e-17!124;CL:0002087!1.95e-15!119;CL:0000791!1.43e-10!18;CL:0000789!1.43e-10!18;CL:0002420!1.43e-10!18;CL:0002419!1.43e-10!18;CL:0000790!1.43e-10!18;CL:0000084!4.57e-09!25;CL:0000827!4.57e-09!25;CL:0000945!5.70e-09!24;CL:0000826!5.70e-09!24;CL:0000236!8.86e-08!14;CL:0000625!3.15e-07!11 | |ontology_enrichment_celltype=CL:0000037!6.44e-24!172;CL:0000566!6.44e-24!172;CL:0000738!1.43e-22!140;CL:0002032!3.88e-21!165;CL:0000837!3.88e-21!165;CL:0000988!4.16e-21!182;CL:0000542!9.43e-19!53;CL:0000051!9.43e-19!53;CL:0000838!1.74e-18!52;CL:0002031!7.63e-17!124;CL:0002087!1.95e-15!119;CL:0000791!1.43e-10!18;CL:0000789!1.43e-10!18;CL:0002420!1.43e-10!18;CL:0002419!1.43e-10!18;CL:0000790!1.43e-10!18;CL:0000084!4.57e-09!25;CL:0000827!4.57e-09!25;CL:0000945!5.70e-09!24;CL:0000826!5.70e-09!24;CL:0000236!8.86e-08!14;CL:0000625!3.15e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000542;5.06e-12;53!CL:0000791;2.13e-11;18!CL:0000789;2.13e-11;18!CL:0002419;2.13e-11;18!CL:0000945;5.36e-10;24!CL:0000084;9.14e-10;25!CL:0000236;4.51e-08;13!CL:0000625;7.95e-08;11!CL:0002087;5.73e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.29e-26,168;CL:0000738,3.32e-26,136;CL:0000988,3.39e-24,177;CL:0002032,3.98e-23,161;CL:0000837,3.98e-23,161;CL:0000542,6.36e-21,53;CL:0000051,6.36e-21,53;CL:0000838,1.25e-20,52;CL:0002031,1.06e-19,120;CL:0002087,4.21e-18,115;CL:0000791,1.61e-11,18;CL:0000789,1.61e-11,18;CL:0002420,1.61e-11,18;CL:0002419,1.61e-11,18;CL:0000790,1.61e-11,18;CL:0000084,3.36e-10,25;CL:0000827,3.36e-10,25;CL:0000945,9.42e-10,24;CL:0000826,9.42e-10,24;CL:0000236,1.95e-08,14;CL:0000625,7.90e-08,11;CL:0000763,6.06e-07,108;CL:0000049,6.06e-07,108 | |||
|ontology_enrichment_development_v019=CL:0000051;5.06e-12;53!CL:0000790;2.13e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.03e-17!115;UBERON:0001049!5.31e-11!57;UBERON:0005068!5.31e-11!57;UBERON:0006241!5.31e-11!57;UBERON:0007135!5.31e-11!57;UBERON:0000073!3.11e-10!94;UBERON:0001016!3.11e-10!94;UBERON:0001017!1.29e-09!82;UBERON:0003080!1.42e-09!42;UBERON:0005743!1.68e-09!86;UBERON:0002780!2.04e-09!41;UBERON:0001890!2.04e-09!41;UBERON:0006240!2.04e-09!41;UBERON:0002020!1.22e-08!34;UBERON:0003528!1.22e-08!34;UBERON:0001893!1.62e-08!34;UBERON:0002791!2.46e-08!33;UBERON:0001869!3.55e-08!32;UBERON:0002616!6.39e-08!59;UBERON:0000955!5.29e-07!69;UBERON:0006238!5.29e-07!69 | |ontology_enrichment_uberon=UBERON:0007023!2.03e-17!115;UBERON:0001049!5.31e-11!57;UBERON:0005068!5.31e-11!57;UBERON:0006241!5.31e-11!57;UBERON:0007135!5.31e-11!57;UBERON:0000073!3.11e-10!94;UBERON:0001016!3.11e-10!94;UBERON:0001017!1.29e-09!82;UBERON:0003080!1.42e-09!42;UBERON:0005743!1.68e-09!86;UBERON:0002780!2.04e-09!41;UBERON:0001890!2.04e-09!41;UBERON:0006240!2.04e-09!41;UBERON:0002020!1.22e-08!34;UBERON:0003528!1.22e-08!34;UBERON:0001893!1.62e-08!34;UBERON:0002791!2.46e-08!33;UBERON:0001869!3.55e-08!32;UBERON:0002616!6.39e-08!59;UBERON:0000955!5.29e-07!69;UBERON:0006238!5.29e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;6.03e-08;41!UBERON:0001890;6.03e-08;41!UBERON:0002791;9.67e-08;32!UBERON:0001869;9.74e-08;32!UBERON:0003528;1.10e-07;34!UBERON:0002020;1.10e-07;34!UBERON:0001893;1.16e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.82e-18,114;UBERON:0001049,7.79e-11,56;UBERON:0005068,7.79e-11,56;UBERON:0006241,7.79e-11,56;UBERON:0007135,7.79e-11,56;UBERON:0001016,1.17e-10,89;UBERON:0000073,3.64e-10,53;UBERON:0002616,3.64e-10,53;UBERON:0002780,3.74e-10,41;UBERON:0001890,3.74e-10,41;UBERON:0003080,3.74e-10,41;UBERON:0006240,3.74e-10,41;UBERON:0001017,8.04e-10,81;UBERON:0003528,5.14e-09,34;UBERON:0002020,5.14e-09,34;UBERON:0001893,6.98e-09,34;UBERON:0001869,1.66e-08,32;UBERON:0002791,1.93e-08,32;UBERON:0002390,2.22e-07,98;UBERON:0003061,2.22e-07,98;UBERON:0000955,5.32e-07,68;UBERON:0006238,5.32e-07,68 | |||
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| ||
|short_description=p2@SP4 | |short_description=p2@SP4 | ||
}} | }} |
Latest revision as of 18:10, 17 September 2015
Short description: | p2@SP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SP4_5end |
Coexpression cluster: | C1055_CD19_thymus_CD4_CD8_Neutrophils_Natural_cerebellum |
Association with transcript: | 0bp_to_ENST00000222584, ENST00000432066, ENST00000446800, ENST00000448246_5end |
EntrezGene: | SP4 |
HGNC: | 11209 |
UniProt: | Q02446C9JUS7B4DKX0F8WB93 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.29e-26 | 168 |
leukocyte | 3.32e-26 | 136 |
hematopoietic cell | 3.39e-24 | 177 |
hematopoietic oligopotent progenitor cell | 3.98e-23 | 161 |
hematopoietic multipotent progenitor cell | 3.98e-23 | 161 |
lymphocyte | 6.36e-21 | 53 |
common lymphoid progenitor | 6.36e-21 | 53 |
lymphoid lineage restricted progenitor cell | 1.25e-20 | 52 |
hematopoietic lineage restricted progenitor cell | 1.06e-19 | 120 |
nongranular leukocyte | 4.21e-18 | 115 |
mature alpha-beta T cell | 1.61e-11 | 18 |
alpha-beta T cell | 1.61e-11 | 18 |
immature T cell | 1.61e-11 | 18 |
mature T cell | 1.61e-11 | 18 |
immature alpha-beta T cell | 1.61e-11 | 18 |
T cell | 3.36e-10 | 25 |
pro-T cell | 3.36e-10 | 25 |
lymphocyte of B lineage | 9.42e-10 | 24 |
pro-B cell | 9.42e-10 | 24 |
B cell | 1.95e-08 | 14 |
CD8-positive, alpha-beta T cell | 7.90e-08 | 11 |
myeloid cell | 6.06e-07 | 108 |
common myeloid progenitor | 6.06e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.82e-18 | 114 |
neural tube | 7.79e-11 | 56 |
neural rod | 7.79e-11 | 56 |
future spinal cord | 7.79e-11 | 56 |
neural keel | 7.79e-11 | 56 |
nervous system | 1.17e-10 | 89 |
regional part of nervous system | 3.64e-10 | 53 |
regional part of brain | 3.64e-10 | 53 |
regional part of forebrain | 3.74e-10 | 41 |
forebrain | 3.74e-10 | 41 |
anterior neural tube | 3.74e-10 | 41 |
future forebrain | 3.74e-10 | 41 |
central nervous system | 8.04e-10 | 81 |
brain grey matter | 5.14e-09 | 34 |
gray matter | 5.14e-09 | 34 |
telencephalon | 6.98e-09 | 34 |
cerebral hemisphere | 1.66e-08 | 32 |
regional part of telencephalon | 1.93e-08 | 32 |
hematopoietic system | 2.22e-07 | 98 |
blood island | 2.22e-07 | 98 |
brain | 5.32e-07 | 68 |
future brain | 5.32e-07 | 68 |