FFCP PHASE1:Hg19::chr12:20522816..20522841,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5139 | |EntrezGene=5139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8778 | |HGNC=8778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-217bp_to_ENST00000542675_5end | |association_with_transcript=-217bp_to_ENST00000542675_5end | ||
|cluster_id=chr12:20522816..20522841,+ | |||
|coexpression_cluster_id=C1012 | |||
|description=CAGE_peak_4_at_PDE3A_5end | |description=CAGE_peak_4_at_PDE3A_5end | ||
|id=chr12:20522816..20522841,+ | |id=chr12:20522816..20522841,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000097;6.09e-15;5!CL:0000163;3.96e-08;9!CL:0002195;5.07e-07;2!CL:0002571;5.07e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,6.78e-15,5;CL:0002028,6.78e-15,5;CL:0000163,4.20e-08,9;CL:0002195,5.90e-07,2;CL:0002571,5.90e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.43e-16;29!UBERON:0005062;7.42e-08;4!UBERON:0007284;7.42e-08;4!UBERON:0004872;9.75e-07;7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:114;1.06e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,1.03e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.06e-25!115;UBERON:0000477!2.44e-14!286;UBERON:0000468!5.05e-12!659;UBERON:0000481!2.35e-11!347;UBERON:0000025!1.79e-10!194;UBERON:0001737!3.17e-10!9;UBERON:0000922!3.19e-09!612;UBERON:0000467!1.23e-08!625;UBERON:0000480!1.54e-08!626;UBERON:0001017!3.74e-08!82;UBERON:0002050!4.20e-08!605;UBERON:0005423!4.20e-08!605;UBERON:0004111!4.37e-08!241;UBERON:0007100!6.05e-08!27;UBERON:0005743!6.20e-08!86;UBERON:0004872!7.66e-08!84;UBERON:0002616!8.72e-08!59;UBERON:0000923!9.10e-08!604;UBERON:0005291!9.10e-08!604;UBERON:0006598!9.10e-08!604;UBERON:0002532!9.10e-08!604;UBERON:0001049!1.36e-07!57;UBERON:0005068!1.36e-07!57;UBERON:0006241!1.36e-07!57;UBERON:0007135!1.36e-07!57;UBERON:0000119!4.13e-07!312;UBERON:0000064!4.31e-07!219;UBERON:0000073!4.82e-07!94;UBERON:0001016!4.82e-07!94;UBERON:0002346!4.84e-07!90;UBERON:0003075!5.05e-07!86;UBERON:0007284!5.05e-07!86;UBERON:0001557!5.51e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.00e-25;9!UBERON:0001557;2.00e-25;9!UBERON:0004151;1.95e-10;3!UBERON:0003978;2.27e-10;3!UBERON:0000946;2.27e-10;3!UBERON:0000072;2.17e-09;37!UBERON:0007100;7.22e-09;25!UBERON:0000065;2.90e-08;44!UBERON:0002081;2.08e-07;2!UBERON:0002133;2.08e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,9.36e-26,9;UBERON:0008947,9.05e-12,38;UBERON:0003258,9.05e-12,38;UBERON:0001557,3.17e-11,19;UBERON:0004151,1.93e-10,3;UBERON:0003978,2.18e-10,3;UBERON:0009751,2.18e-10,3;UBERON:0000946,2.18e-10,3;UBERON:0002523,2.18e-10,3;UBERON:0005983,2.18e-10,3;UBERON:0002165,2.18e-10,3;UBERON:0002062,2.18e-10,3;UBERON:0007280,2.18e-10,3;UBERON:0004921,1.15e-09,118;UBERON:0001041,2.58e-08,87;UBERON:0007100,4.54e-08,27;UBERON:0000072,1.28e-07,47;UBERON:0002133,1.99e-07,2;UBERON:0002081,2.05e-07,2;UBERON:0010227,2.05e-07,2;UBERON:0000065,2.44e-07,54;UBERON:0004119,6.45e-07,160;UBERON:0000925,6.45e-07,160;UBERON:0006595,6.45e-07,160;UBERON:0001007,9.09e-07,145;UBERON:0001555,9.09e-07,145;UBERON:0007026,9.09e-07,145 | |||
|phase1_expression=0.726713517082227,0.856402095563933,0.281908808191942,0,0,0,0,0,0,0.245733936501509,0,0.436882744260345,0.263766978228454,0.37129905888014,0,0,0,0,0,0.246242116153576,0.204000691244253,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0.361439152384566,4.01070328508712,0.579386075843295,0.795285947051099,0,0.283604451492204,0,0.351339142772504,0.261958150995425,0,0,0,0,0,0,0,0,0.596287222100115,0,0,0,0.838998872419812,0.275118041940067,0.417989933073621,0,0,0,0,0.760272105718513,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0.225222960966644,0,0,0.366403487860815,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0,0,0,0.311211035399766,0.269421344139376,0.980771418680752,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0.919463387397059,0.901428353439581,0.340296549480063,0,0.213557388818567,0,0,0,0.772921620136887,0,0,0,0.252433774244115,0,0.646584227275248,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0.414644220061482,0,0.36497735907583,0,0,0,0,0,1.65629520055781,3.87744787179634,4.82022059766964,2.97793726377464,1.96091499683166,2.84724742933316,3.10112008768378,4.12065076763227,3.07797725557112,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,3.94130590316755,4.31437326664808,3.10992173311158,1.15295962733569,2.65109110195398,0,0,0,0,0,0,0,0.560655421726804,0,0.7333828582095,0,0,0,0,0,0,0,0,3.28849385413739,0,0,0,2.13235169245527,0,0,0,0,0,0,0,0.718874566474748,1.14861935834114,0,0.144781306667579,0,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0.167516265334349,0,0,0,0,0.24538298343828,1.00034104211935,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0.343143423810856,0,0,0,0.303127571446259,3.32870879020994,0.907170879989041,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0.232420756919918,0,0,0,0,0,0,0,0.15403067420883,0.784349769176855,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0.462145851343933,0.460511024178389,0.275673144969061,0.537101224341368,0,0.596586391912706,0.356128142586949,0,0,0,0,0,0,0,2.15623506123262,1.06461206063404,0,0.37064843820784,1.71749864090389,0,0.949138274156178,0.190630193923825,0,0,0,0.78494864019923,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0,0.487426979262569,1.05650146756755,0,0,0,0,0.66343897524122,1.75380354101505,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,1.92495971052672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811367035427949,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0.422008249231538,0.111308705022906,0,0,2.98871982376605,0.552567831062295,0,0,0,1.55519793830904,0,4.47552936689023,0,0.493217028184668,0,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,0,0,0.885741385813839,0.361789315876224,0,0.110579259931225,1.18219047581419,0.658156191461918,4.4664770042786,0,0.769502585037971,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0.332423363800313,0,0,0,0,0,0,0,0,0,0,2.29989667708682,2.4441205797345,0,0.123563938946503,0.104421949505455,0,0,0.234264445725339,0,0,0,0.394584402849391,0,0.30607276163049,1.01098527405581,0,0,0,0,0,0,0,0,1.04135843001079,0,0,0.873633341210151,0.687944129886466,4.35403490800883,5.26243083020536,4.02365739560725,2.03676934625681,0,1.80784592624426,0,0,0.253243183823515,0,0,0.640358984218058,0,0,0,0.171594997861965,0.288109595976299,0,0,0,0,0,0,0,0.410716136675979,0,0,0,12.5677080572514,9.62473780849071,3.58936512288407,12.5797770314364,24.4658847437845,11.6049157869774,4.0981918216903,0,0,0,0,0,0.688992370603241,0,0,0.272406812223151,0,0.137539436597234,0.415440338029185,0,0,0.303747783290123,0,0.315222829196793,1.88836517285993,0,1.43429871466276,0,12.1498205483472,14.5660233480395,0,0,0,0,0,0,0,0,0.293104467356165,0,0.775697738169303,0.52893040697076,1.36869470307464,0,0.533937062838473,1.41483874589699,0.828478110694391,0,0,0,0,0,0,0,0.327872630709804,0,0.886068179966986,0.122026264901963,0.250381861413,1.14681839138014,0.665574309221114,0.683060432355218,0,0,0,0.856396000634902,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0.777186002913902,0.591420599958536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0.323474434190045,0,0,0,0.212574920101683,0.123935764259002,0,0.318004350653419,0,0,0.705351887381368,0,0.256916900385838,0,0.159633859057151,0,0,0.138314504928436,0.322951291263702,0,0,0,0,0,0,0,0,0.82731361184183,0,0.781514011233092,0,0,0,0,0,0.620060389503552,0.317079050969534,0,0,5.95453414067153,0,0,0,0.672567444437648,0,0.227662191351298,1.24183318227694,0,0,0.0679697329768317,0.263091094251396,0,0,0.78493092850514,0.314231179832004,0,1.82631744101899,0,0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| ||
|short_description=p4@PDE3A | |short_description=p4@PDE3A | ||
}} | }} |
Latest revision as of 18:46, 17 September 2015
Short description: | p4@PDE3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PDE3A_5end |
Coexpression cluster: | C1012_heart_left_bile_Mast_epitheloid_aorta_umbilical |
Association with transcript: | -217bp_to_ENST00000542675_5end |
EntrezGene: | PDE3A |
HGNC: | 8778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 6.78e-15 | 5 |
basophil mast progenitor cell | 6.78e-15 | 5 |
endocrine cell | 4.20e-08 | 9 |
hepatic stem cell | 5.90e-07 | 2 |
hepatic mesenchymal stem cell | 5.90e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 9.36e-26 | 9 |
respiratory primordium | 9.05e-12 | 38 |
endoderm of foregut | 9.05e-12 | 38 |
upper respiratory tract | 3.17e-11 | 19 |
cardiac chamber | 1.93e-10 | 3 |
valve | 2.18e-10 | 3 |
cardiac mesenchyme | 2.18e-10 | 3 |
cardial valve | 2.18e-10 | 3 |
tunica intima | 2.18e-10 | 3 |
heart layer | 2.18e-10 | 3 |
endocardium | 2.18e-10 | 3 |
endocardial cushion | 2.18e-10 | 3 |
presumptive endocardium | 2.18e-10 | 3 |
subdivision of digestive tract | 1.15e-09 | 118 |
foregut | 2.58e-08 | 87 |
primary circulatory organ | 4.54e-08 | 27 |
segment of respiratory tract | 1.28e-07 | 47 |
atrioventricular valve | 1.99e-07 | 2 |
cardiac atrium | 2.05e-07 | 2 |
future cardiac atrium | 2.05e-07 | 2 |
respiratory tract | 2.44e-07 | 54 |
endoderm-derived structure | 6.45e-07 | 160 |
endoderm | 6.45e-07 | 160 |
presumptive endoderm | 6.45e-07 | 160 |
digestive system | 9.09e-07 | 145 |
digestive tract | 9.09e-07 | 145 |
primitive gut | 9.09e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
heart disease | 1.03e-07 | 2 |