FFCP PHASE1:Hg19::chr12:20522842..20522861,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:20522842..20522861,+ to FFCP PHASE1:Hg19::chr12:20522842..20522861,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5139 | |EntrezGene=5139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8778 | |HGNC=8778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-197bp_to_ENST00000542675_5end | |||
|cluster_id=chr12:20522842..20522861,+ | |||
|coexpression_cluster_id=C1012 | |||
|description=CAGE_peak_6_at_PDE3A_5end | |||
|id=chr12:20522842..20522861,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002195;7.88e-07;2!CL:0002571;7.88e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002195,7.67e-07,2;CL:0002571,7.67e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.56e-15;29!UBERON:0005062;2.24e-08;4!UBERON:0007284;2.24e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;4.03e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,4.05e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.51e-31!115;UBERON:0000477!1.59e-15!286;UBERON:0000025!2.19e-11!194;UBERON:0002616!2.30e-11!59;UBERON:0000481!3.12e-11!347;UBERON:0001737!3.54e-11!9;UBERON:0001049!1.06e-10!57;UBERON:0005068!1.06e-10!57;UBERON:0006241!1.06e-10!57;UBERON:0007135!1.06e-10!57;UBERON:0000468!1.23e-10!659;UBERON:0003075!2.29e-10!86;UBERON:0007284!2.29e-10!86;UBERON:0002346!6.42e-10!90;UBERON:0004111!9.53e-10!241;UBERON:0001017!8.59e-09!82;UBERON:0000955!9.27e-09!69;UBERON:0006238!9.27e-09!69;UBERON:0001557!1.18e-08!19;UBERON:0005743!1.36e-08!86;UBERON:0000922!1.44e-08!612;UBERON:0000073!6.64e-08!94;UBERON:0001016!6.64e-08!94;UBERON:0002050!2.41e-07!605;UBERON:0005423!2.41e-07!605;UBERON:0000467!2.98e-07!625;UBERON:0000062!3.10e-07!511;UBERON:0003080!3.51e-07!42;UBERON:0000480!3.59e-07!626;UBERON:0000923!5.21e-07!604;UBERON:0005291!5.21e-07!604;UBERON:0006598!5.21e-07!604;UBERON:0002532!5.21e-07!604;UBERON:0000153!7.58e-07!129;UBERON:0007811!7.58e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.86e-28;9!UBERON:0001557;5.86e-28;9!UBERON:0004151;4.52e-11;3!UBERON:0003978;4.67e-11;3!UBERON:0000946;4.67e-11;3!UBERON:0007100;1.65e-09;25!UBERON:0000072;5.76e-09;37!UBERON:0000065;5.68e-08;44!UBERON:0002133;6.99e-08;2!UBERON:0002081;7.72e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.71e-28,9;UBERON:0001557,4.24e-15,19;UBERON:0001041,1.48e-11,87;UBERON:0008947,3.72e-11,38;UBERON:0003258,3.72e-11,38;UBERON:0003978,4.33e-11,3;UBERON:0009751,4.33e-11,3;UBERON:0004151,4.33e-11,3;UBERON:0000946,4.33e-11,3;UBERON:0002523,4.33e-11,3;UBERON:0005983,4.33e-11,3;UBERON:0002165,4.33e-11,3;UBERON:0002062,4.33e-11,3;UBERON:0007280,4.33e-11,3;UBERON:0004921,7.64e-11,118;UBERON:0007100,1.09e-08,27;UBERON:0000072,1.86e-08,47;UBERON:0000065,3.35e-08,54;UBERON:0001004,4.56e-08,74;UBERON:0002133,6.46e-08,2;UBERON:0002081,7.38e-08,2;UBERON:0010227,7.38e-08,2;UBERON:0001007,1.03e-07,145;UBERON:0001555,1.03e-07,145;UBERON:0007026,1.03e-07,145 | |||
|phase1_expression=1.09007027562334,0,0.422863212287913,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0.247532705920093,0,0,0,0,0,0,0.408001382488506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0.144846518960824,0.795285947051099,0,0.0945348171640679,0.443458794925128,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0,0.550236083880135,0.208994966536811,0,0,0,0,0,0.24406205754817,0.367663080345869,0.81014194788176,0,0,0,0,0,0.183201743930407,0,0,0,0.993943903390637,0.25326102332916,0,0,0,0,0,0,0.311211035399766,0.134710672069688,0.326923806226917,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0.751190294532984,0.113432183160021,0.358779271377724,0.213557388818567,0,0,0,0.257640540045629,0.18611685633159,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,2.24782920075703,3.37169380156203,1.92808823906786,2.53676137284506,4.79334777003293,3.55905928666645,3.23595139584395,3.13954344200554,3.07797725557112,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,2.90559832243646,1.24396869324463,0.720599767084807,0.75745460055828,0,0,0,0,0,0,0,0.336393253036082,0,0.51336800074665,0,0,0,0,0,0,0,0,1.71573592389777,0,0,0,1.06617584622764,0,0,0,0,0,0,0,0.239624855491583,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,1.54016790088044,0,0,0.55597265731176,2.28999818787186,0.372158369359667,0.632758849437452,0.190630193923825,0,0,0,1.56989728039846,0,0,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,1.05650146756755,0.136499911407986,0,0,0,0,2.63070531152258,0,0,0,0,0.563391205064483,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,1.02555725490326,0,0,0,0,0,0,1.9882952955326,0,0,0,0,4.78195171802567,0.552567831062295,0,0,0,1.24415835064723,0,6.08671993897071,0,0.493217028184668,0,0,0.969332746095218,0,0,0,0,0.724999575434793,0,0,0,0,0,0.520874984799877,0.885741385813839,0.361789315876224,0,0.221158519862449,0.295547618953547,0.219385397153973,2.61452312445576,0,0.615602068030377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41532103205343,0,0,0,0.104421949505455,0.202203398942031,1.60515529459758,0,0,0,0,0,1.20990716048664,0,0.695052375913368,0,0,0,0,0,0,0,0.138674673013139,1.04135843001079,0,0,0.17472666824203,1.20390222730132,5.41835455218877,6.21259195232577,5.41962016551181,1.16386819786103,0,0.677942222341597,0,0,0.189932387867636,0,0,0.426905989478705,0,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,15.9190968725185,11.4580212005842,3.58936512288407,14.1772090354284,24.4658847437845,11.8280872444192,2.68733889946905,0.360299883542404,0,0,0,0,0.0984274815147488,0,0.795229689809303,0,0,0,0,0,0,0.182248669974074,0,0.236417121897595,1.31136470337495,0,1.6135860539956,0,11.4351252219739,17.8764831998667,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.13223260174269,1.02652102730598,0,0.427149650270779,1.41483874589699,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0.327872630709804,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0.221858103073705,0.372578417648301,0,0,0,1.14186133417987,0,0,0,0,0,0,0,0,0,0,0,0.310874401165561,0.591420599958536,0,0,0.155262956876259,0.414706207840855,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,3.78554694685953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431299245586727,0,0,0,0,0,0,0.636008701306837,0,0,0.352675943690684,0,0.192687675289379,0,0.159633859057151,0.205116364240755,0.252071696221718,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.676892955143315,0,0,0,0,0,0.202612753855184,0.781078098613847,0,0.0634158101939068,0,1.64477330057155,3.47347824872506,0.175871244359621,0,0.535701835878287,0.672567444437648,0.606965604236632,0,0.532214220975833,0,0,0.135939465953663,0.0657727735628491,0,0,0.235479278551542,0.157115589916002,0,0,0,0,1.35805433935647,0,0,0,0,0,0,0,1.29068207646083,0,0,0.423387050190929,0,0,0,0,0,0,0,0.718639647993729,0,0,0,0,2.37840181555137,0,0,0,1.77500563648273,1.74847648403166,0,0.245148321753905,0,0.392616934229891,0,1.2679671827502,0.169927114687817,0.187967835959707,1.16024198352439,0,0,0,0,1.46067277649303,0.458729283404541,0.143339583151451,0,0,0.436350690340377,2.1161073620616,0.371995018166751,0,0,0.126166424835079,0,0.253397002022874,0,0,0,0,0.454672189309436,0.267964130156178,0,0.1034329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| 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| ||
|short_description=p6@PDE3A | |||
}} | }} |
Latest revision as of 18:48, 17 September 2015
Short description: | p6@PDE3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PDE3A_5end |
Coexpression cluster: | C1012_heart_left_bile_Mast_epitheloid_aorta_umbilical |
Association with transcript: | -197bp_to_ENST00000542675_5end |
EntrezGene: | PDE3A |
HGNC: | 8778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stem cell | 7.67e-07 | 2 |
hepatic mesenchymal stem cell | 7.67e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.71e-28 | 9 |
upper respiratory tract | 4.24e-15 | 19 |
foregut | 1.48e-11 | 87 |
respiratory primordium | 3.72e-11 | 38 |
endoderm of foregut | 3.72e-11 | 38 |
valve | 4.33e-11 | 3 |
cardiac mesenchyme | 4.33e-11 | 3 |
cardiac chamber | 4.33e-11 | 3 |
cardial valve | 4.33e-11 | 3 |
tunica intima | 4.33e-11 | 3 |
heart layer | 4.33e-11 | 3 |
endocardium | 4.33e-11 | 3 |
endocardial cushion | 4.33e-11 | 3 |
presumptive endocardium | 4.33e-11 | 3 |
subdivision of digestive tract | 7.64e-11 | 118 |
primary circulatory organ | 1.09e-08 | 27 |
segment of respiratory tract | 1.86e-08 | 47 |
respiratory tract | 3.35e-08 | 54 |
respiratory system | 4.56e-08 | 74 |
atrioventricular valve | 6.46e-08 | 2 |
cardiac atrium | 7.38e-08 | 2 |
future cardiac atrium | 7.38e-08 | 2 |
digestive system | 1.03e-07 | 145 |
digestive tract | 1.03e-07 | 145 |
primitive gut | 1.03e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
heart disease | 4.05e-08 | 2 |