FFCP PHASE1:Hg19::chr16:7382840..7382860,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr16:7382840..7382860,+
|short_description=p3@RBFOX1
|description=CAGE_peak_3_at_RBFOX1_5end
|association_with_transcript=89bp_to_ENST00000311745,ENST000003402...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54715 | |EntrezGene=54715 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18222 | |HGNC=18222 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NWB1,F8WAC5 | |UniProt=Q9NWB1,F8WAC5 | ||
|association_with_transcript=89bp_to_ENST00000311745,ENST00000340209,ENST00000352951,ENST00000355637,ENST00000436368,NM_145891,NM_145892,NM_145893,uc002cyw.2,uc002cyx.2,uc002cyy.2,uc010uyc.1_5end | |||
|cluster_id=chr16:7382840..7382860,+ | |||
|coexpression_cluster_id=C72 | |||
|description=CAGE_peak_3_at_RBFOX1_5end | |||
|id=chr16:7382840..7382860,+ | |||
|ontology_enrichment_celltype=CL:0000188!2.47e-16!9;CL:0000594!1.04e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000188;2.16e-24;9!CL:0000594;5.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,2.01e-24,9;CL:0000594,5.55e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0005062;2.38e-11;4!UBERON:0007284;2.38e-11;4!UBERON:0006603;7.11e-07;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;5.01e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,5.13e-11,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001134;4.55e-34;16!UBERON:0002036;4.55e-34;16!UBERON:0002385;3.19e-16;31!UBERON:0001015;3.19e-16;31!UBERON:0000383;3.19e-16;31!UBERON:0004151;4.64e-15;3!UBERON:0003978;5.75e-15;3!UBERON:0000946;5.75e-15;3!UBERON:0007100;2.94e-14;25!UBERON:0005090;3.82e-11;2!UBERON:0001630;3.82e-11;2!UBERON:0000341;7.59e-11;2!UBERON:0002133;2.18e-10;2!UBERON:0002081;2.46e-10;2!UBERON:0003127;4.21e-10;2!UBERON:0001723;1.13e-07;3!UBERON:0001033;1.13e-07;3!UBERON:0000948;2.35e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,4.53e-15,3;UBERON:0003978,5.48e-15,3;UBERON:0009751,5.48e-15,3;UBERON:0000946,5.48e-15,3;UBERON:0002523,5.48e-15,3;UBERON:0005983,5.48e-15,3;UBERON:0002165,5.48e-15,3;UBERON:0002062,5.48e-15,3;UBERON:0007280,5.48e-15,3;UBERON:0007100,4.39e-13,27;UBERON:0007023,3.92e-12,114;UBERON:0005090,3.82e-11,2;UBERON:0001630,3.82e-11,2;UBERON:0000341,7.59e-11,2;UBERON:0003103,7.63e-11,68;UBERON:0002133,2.08e-10,2;UBERON:0002081,2.40e-10,2;UBERON:0010227,2.40e-10,2;UBERON:0003127,3.50e-10,2;UBERON:0001134,1.44e-08,62;UBERON:0002036,1.44e-08,62;UBERON:0003082,1.44e-08,62;UBERON:0002385,3.16e-08,64;UBERON:0001015,3.16e-08,64;UBERON:0000383,3.16e-08,64;UBERON:0001723,1.15e-07,3;UBERON:0001033,1.15e-07,3;UBERON:0010056,1.15e-07,3;UBERON:0002329,3.48e-07,71;UBERON:0003059,3.48e-07,71;UBERON:0007282,3.48e-07,71;UBERON:0004290,3.48e-07,71;UBERON:0009618,3.48e-07,71;UBERON:0003077,4.71e-07,72;UBERON:0007285,4.71e-07,72;UBERON:0007524,6.32e-07,73 | |||
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| ||
|short_description=p3@RBFOX1 | |||
}} | }} |
Latest revision as of 20:12, 17 September 2015
Short description: | p3@RBFOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RBFOX1_5end |
Coexpression cluster: | C72_skeletal_tongue_throat_heart_diaphragm_penis_left |
Association with transcript: | 89bp_to_ENST00000311745, ENST00000340209, ENST00000352951, ENST00000355637, ENST00000436368, NM_145891, NM_145892, NM_145893, uc002cyw.2, uc002cyx.2, uc002cyy.2, uc010uyc.1_5end |
EntrezGene: | RBFOX1 |
HGNC: | 18222 |
UniProt: | Q9NWB1F8WAC5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 2.01e-24 | 9 |
skeletal muscle satellite cell | 5.55e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 4.53e-15 | 3 |
valve | 5.48e-15 | 3 |
cardiac mesenchyme | 5.48e-15 | 3 |
cardial valve | 5.48e-15 | 3 |
tunica intima | 5.48e-15 | 3 |
heart layer | 5.48e-15 | 3 |
endocardium | 5.48e-15 | 3 |
endocardial cushion | 5.48e-15 | 3 |
presumptive endocardium | 5.48e-15 | 3 |
primary circulatory organ | 4.39e-13 | 27 |
adult organism | 3.92e-12 | 114 |
muscle structure | 3.82e-11 | 2 |
muscle organ | 3.82e-11 | 2 |
throat | 7.59e-11 | 2 |
compound organ | 7.63e-11 | 68 |
atrioventricular valve | 2.08e-10 | 2 |
cardiac atrium | 2.40e-10 | 2 |
future cardiac atrium | 2.40e-10 | 2 |
open tracheal system trachea | 3.50e-10 | 2 |
skeletal muscle tissue | 1.44e-08 | 62 |
striated muscle tissue | 1.44e-08 | 62 |
myotome | 1.44e-08 | 62 |
muscle tissue | 3.16e-08 | 64 |
musculature | 3.16e-08 | 64 |
musculature of body | 3.16e-08 | 64 |
tongue | 1.15e-07 | 3 |
gustatory system | 1.15e-07 | 3 |
future tongue | 1.15e-07 | 3 |
somite | 3.48e-07 | 71 |
presomitic mesoderm | 3.48e-07 | 71 |
presumptive segmental plate | 3.48e-07 | 71 |
dermomyotome | 3.48e-07 | 71 |
trunk paraxial mesoderm | 3.48e-07 | 71 |
paraxial mesoderm | 4.71e-07 | 72 |
presumptive paraxial mesoderm | 4.71e-07 | 72 |
dense mesenchyme tissue | 6.32e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
heart disease | 5.13e-11 | 2 |