FFCP PHASE1:Hg19::chr8:30300216..30300245,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11030 | |EntrezGene=11030 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19097 | |HGNC=19097 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000523717,uc010lvh.1_5end | |association_with_transcript=0bp_to_ENST00000523717,uc010lvh.1_5end | ||
|cluster_id=chr8:30300216..30300245,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_10_at_RBPMS_5end | |description=CAGE_peak_10_at_RBPMS_5end | ||
|id=chr8:30300216..30300245,+ | |id=chr8:30300216..30300245,+ | ||
|ontology_enrichment_celltype=CL:0005020!4.46e-22!6;CL:0002138!4.46e-22!6;CL:0005022!4.46e-22!6;CL:0000115!3.09e-17!35;CL:0002078!5.18e-15!44;CL:0002139!2.99e-13!24;CL:0002681!1.91e-12!13;CL:0002584!1.91e-12!13;CL:0000213!1.01e-10!57;CL:0000215!1.01e-10!57;CL:1000449!6.47e-10!16;CL:0000666!5.00e-09!4;CL:0002188!5.00e-09!4;CL:1000497!1.07e-08!18;CL:0002518!1.07e-08!18;CL:1000612!1.82e-08!7;CL:1000746!1.82e-08!7 | |ontology_enrichment_celltype=CL:0005020!4.46e-22!6;CL:0002138!4.46e-22!6;CL:0005022!4.46e-22!6;CL:0000115!3.09e-17!35;CL:0002078!5.18e-15!44;CL:0002139!2.99e-13!24;CL:0002681!1.91e-12!13;CL:0002584!1.91e-12!13;CL:0000213!1.01e-10!57;CL:0000215!1.01e-10!57;CL:1000449!6.47e-10!16;CL:0000666!5.00e-09!4;CL:0002188!5.00e-09!4;CL:1000497!1.07e-08!18;CL:0002518!1.07e-08!18;CL:1000612!1.82e-08!7;CL:1000746!1.82e-08!7 | ||
|ontology_enrichment_celltype_v019=CL:0002138;1.07e-72;6!CL:0002139;2.03e-24;24!CL:0000115;2.04e-20;36!CL:0002078;5.99e-18;45!CL:0000213;1.35e-11;58!CL:0000215;1.35e-11;58!CL:0002188;4.33e-11;5!CL:1000746;3.57e-08;7!CL:1000612;3.57e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,1.77e-72,6;CL:0002138,1.77e-72,6;CL:0005022,1.77e-72,6;CL:0000115,1.25e-26,36;CL:0002139,2.43e-24,24;CL:0002078,3.99e-21,45;CL:0000213,3.52e-16,58;CL:0000215,3.52e-16,58;CL:0002188,4.33e-11,5;CL:1000746,3.57e-08,7;CL:1000612,3.57e-08,7;CL:0000222,3.21e-07,121 | |||
|ontology_enrichment_development_v019=CL:0005022;1.07e-72;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002465!5.16e-17!10;UBERON:0001473!2.25e-16!8;UBERON:0004536!2.25e-16!8;UBERON:0006558!2.25e-16!8;UBERON:0003887!1.14e-14!21;UBERON:0001225!1.91e-12!13;UBERON:0008987!1.91e-12!13;UBERON:0000353!4.19e-12!17;UBERON:0000080!2.76e-11!18;UBERON:0002120!2.76e-11!18;UBERON:0004875!2.76e-11!18;UBERON:0005721!2.76e-11!18;UBERON:0005754!2.76e-11!18;UBERON:0007297!2.76e-11!18;UBERON:0003886!2.25e-10!63;UBERON:0002553!2.54e-10!70;UBERON:0004876!5.09e-10!20;UBERON:0001851!6.47e-10!16;UBERON:0004211!6.47e-10!16;UBERON:0001285!6.47e-10!16;UBERON:0007684!6.47e-10!16;UBERON:0003220!6.47e-10!16;UBERON:0004208!6.47e-10!16;UBERON:0006555!2.85e-09!17;UBERON:0005103!2.85e-09!17;UBERON:0000083!2.85e-09!17;UBERON:0009201!2.85e-09!17;UBERON:0004819!2.85e-09!17;UBERON:0006553!2.85e-09!17;UBERON:0003074!2.85e-09!17;UBERON:0003060!2.85e-09!17;UBERON:0000489!8.12e-09!32;UBERON:0002113!8.23e-09!27;UBERON:0003918!8.23e-09!27;UBERON:0005095!8.23e-09!27;UBERON:0007687!8.23e-09!27;UBERON:0000074!1.82e-08!7;UBERON:0001229!1.82e-08!7;UBERON:0001230!1.82e-08!7;UBERON:0005749!1.82e-08!7;UBERON:0004199!1.82e-08!7;UBERON:0004209!1.82e-08!7;UBERON:0004198!1.82e-08!7;UBERON:0001630!2.75e-08!2;UBERON:0005090!2.75e-08!2;UBERON:0005172!9.76e-08!55;UBERON:0005173!9.76e-08!55;UBERON:0000473!1.30e-07!8;UBERON:0000464!1.79e-07!104;UBERON:0000058!2.14e-07!26;UBERON:0003064!2.19e-07!37;UBERON:0006554!3.84e-07!44;UBERON:0000466!4.62e-07!126;UBERON:0001008!6.16e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;1.59e-54;8!UBERON:0004536;1.59e-54;8!UBERON:0006558;1.59e-54;8!UBERON:0002465;1.30e-43;10!UBERON:0002405;4.86e-16;27!UBERON:0002108;6.46e-11;4!UBERON:0002193;4.44e-09;42!UBERON:0000074;3.57e-08;7!UBERON:0001229;3.57e-08;7!UBERON:0000473;2.37e-07;8!UBERON:0000055;4.06e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,2.32e-54,8;UBERON:0004536,2.32e-54,8;UBERON:0006558,2.32e-54,8;UBERON:0002465,1.76e-43,10;UBERON:0002108,5.85e-11,4;UBERON:0000055,3.06e-08,68;UBERON:0010532,3.57e-08,7;UBERON:0000074,3.57e-08,7;UBERON:0001229,3.57e-08,7;UBERON:0001230,3.57e-08,7;UBERON:0003220,3.57e-08,7;UBERON:0005749,3.57e-08,7;UBERON:0004199,3.57e-08,7;UBERON:0004209,3.57e-08,7;UBERON:0004198,3.57e-08,7;UBERON:0000473,2.37e-07,8;UBERON:0005103,2.95e-07,8;UBERON:0000083,2.95e-07,8;UBERON:0009201,2.95e-07,8;UBERON:0006553,2.95e-07,8;UBERON:0003074,2.95e-07,8;UBERON:0003060,2.95e-07,8;UBERON:0002049,4.18e-07,78;UBERON:0007798,4.18e-07,78 | |||
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| ||
|short_description=p10@RBPMS | |short_description=p10@RBPMS | ||
}} | }} |
Latest revision as of 23:32, 17 September 2015
Short description: | p10@RBPMS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_RBPMS_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000523717, uc010lvh.1_5end |
EntrezGene: | RBPMS |
HGNC: | 19097 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 1.77e-72 | 6 |
endothelial cell of lymphatic vessel | 1.77e-72 | 6 |
vascular lymphangioblast | 1.77e-72 | 6 |
endothelial cell | 1.25e-26 | 36 |
endothelial cell of vascular tree | 2.43e-24 | 24 |
meso-epithelial cell | 3.99e-21 | 45 |
lining cell | 3.52e-16 | 58 |
barrier cell | 3.52e-16 | 58 |
glomerular endothelial cell | 4.33e-11 | 5 |
glomerular cell | 3.57e-08 | 7 |
kidney corpuscule cell | 3.57e-08 | 7 |
mesodermal cell | 3.21e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 2.32e-54 | 8 |
lymph vasculature | 2.32e-54 | 8 |
lymphatic part of lymphoid system | 2.32e-54 | 8 |
lymphoid system | 1.76e-43 | 10 |
small intestine | 5.85e-11 | 4 |
vessel | 3.06e-08 | 68 |
primitive nephron | 3.57e-08 | 7 |
renal glomerulus | 3.57e-08 | 7 |
renal corpuscle | 3.57e-08 | 7 |
glomerular capsule | 3.57e-08 | 7 |
metanephric mesenchyme | 3.57e-08 | 7 |
glomerular tuft | 3.57e-08 | 7 |
S-shaped body | 3.57e-08 | 7 |
renal vesicle | 3.57e-08 | 7 |
comma-shaped body | 3.57e-08 | 7 |
testis | 2.37e-07 | 8 |
mesonephric epithelium | 2.95e-07 | 8 |
mesonephric tubule | 2.95e-07 | 8 |
nephric duct | 2.95e-07 | 8 |
renal duct | 2.95e-07 | 8 |
mesonephric duct | 2.95e-07 | 8 |
pronephric duct | 2.95e-07 | 8 |
vasculature | 4.18e-07 | 78 |
vascular system | 4.18e-07 | 78 |