FFCP PHASE1:Hg19::chr21:32716556..32716609,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr21:32716556..32716609,- to FFCP PHASE1:Hg19::chr21:32716556..32716609,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7074 | |EntrezGene=7074 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11805 | |HGNC=11805 | ||
|TSSclassifier=strong | |||
|UniProt=C9JMB5 | |UniProt=C9JMB5 | ||
|association_with_transcript=0bp_to_ENST00000455508_5end | |||
|cluster_id=chr21:32716556..32716609,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_1_at_TIAM1_5end | |||
|id=chr21:32716556..32716609,- | |||
|ontology_enrichment_celltype=CL:0002057!9.63e-22!42;CL:0000557!1.10e-18!71;CL:0000860!5.41e-18!45;CL:0000766!1.75e-16!76;CL:0000839!3.25e-16!70;CL:0002009!3.35e-16!65;CL:0002194!4.85e-15!63;CL:0000576!4.85e-15!63;CL:0000040!4.85e-15!63;CL:0000559!4.85e-15!63;CL:0000763!4.26e-09!112;CL:0000049!4.26e-09!112;CL:0000738!2.07e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.47e-16;33!CL:0002057;1.47e-16;33!CL:0000473;7.17e-15;39!CL:0000234;7.17e-15;39!CL:0000576;9.97e-12;48!CL:0000766;6.96e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.73e-23,48;CL:0000234,3.73e-23,48;CL:0000860,1.79e-22,42;CL:0002057,1.79e-22,42;CL:0000557,2.79e-22,67;CL:0000766,5.19e-20,72;CL:0000839,9.85e-20,66;CL:0002009,1.34e-19,61;CL:0002194,2.62e-18,59;CL:0000576,2.62e-18,59;CL:0000040,2.62e-18,59;CL:0000559,2.62e-18,59;CL:0000763,5.14e-12,108;CL:0000049,5.14e-12,108;CL:0000738,3.08e-09,136;CL:0002031,4.54e-08,120 | |||
|ontology_enrichment_development_v019=CL:0002057;2.04e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.52e-19!102;UBERON:0003061!2.52e-19!102;UBERON:0002371!1.78e-16!80;UBERON:0002193!3.42e-16!112;UBERON:0001474!9.35e-15!86;UBERON:0004765!1.51e-13!101;UBERON:0001434!1.51e-13!101;UBERON:0002204!2.21e-08!167;UBERON:0007023!3.08e-08!115;UBERON:0002616!6.54e-08!59;UBERON:0001049!7.08e-08!57;UBERON:0005068!7.08e-08!57;UBERON:0006241!7.08e-08!57;UBERON:0007135!7.08e-08!57;UBERON:0000062!9.31e-08!511;UBERON:0002405!3.05e-07!115;UBERON:0000955!7.65e-07!69;UBERON:0006238!7.65e-07!69;UBERON:0000153!8.53e-07!129;UBERON:0007811!8.53e-07!129 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.32e-22,98;UBERON:0003061,2.32e-22,98;UBERON:0002371,1.16e-19,76;UBERON:0002193,7.19e-19,108;UBERON:0001474,3.45e-17,82;UBERON:0004765,6.38e-16,90;UBERON:0002405,8.23e-16,93;UBERON:0001434,1.10e-14,100;UBERON:0001049,2.78e-08,56;UBERON:0005068,2.78e-08,56;UBERON:0006241,2.78e-08,56;UBERON:0007135,2.78e-08,56;UBERON:0003081,5.76e-08,203;UBERON:0000073,8.40e-08,53;UBERON:0002616,8.40e-08,53;UBERON:0002204,1.11e-07,167;UBERON:0007023,1.71e-07,114;UBERON:0000922,2.21e-07,592;UBERON:0000955,2.92e-07,68;UBERON:0006238,2.92e-07,68;UBERON:0002050,5.01e-07,564;UBERON:0001017,9.70e-07,81 | |||
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| ||
|short_description=p1@TIAM1 | |||
}} | }} |
Latest revision as of 02:25, 18 September 2015
Short description: | p1@TIAM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TIAM1_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 0bp_to_ENST00000455508_5end |
EntrezGene: | TIAM1 |
HGNC: | 11805 |
UniProt: | C9JMB5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.73e-23 | 48 |
phagocyte | 3.73e-23 | 48 |
classical monocyte | 1.79e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.79e-22 | 42 |
granulocyte monocyte progenitor cell | 2.79e-22 | 67 |
myeloid leukocyte | 5.19e-20 | 72 |
myeloid lineage restricted progenitor cell | 9.85e-20 | 66 |
macrophage dendritic cell progenitor | 1.34e-19 | 61 |
monopoietic cell | 2.62e-18 | 59 |
monocyte | 2.62e-18 | 59 |
monoblast | 2.62e-18 | 59 |
promonocyte | 2.62e-18 | 59 |
myeloid cell | 5.14e-12 | 108 |
common myeloid progenitor | 5.14e-12 | 108 |
leukocyte | 3.08e-09 | 136 |
hematopoietic lineage restricted progenitor cell | 4.54e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.32e-22 | 98 |
blood island | 2.32e-22 | 98 |
bone marrow | 1.16e-19 | 76 |
hemolymphoid system | 7.19e-19 | 108 |
bone element | 3.45e-17 | 82 |
skeletal element | 6.38e-16 | 90 |
immune system | 8.23e-16 | 93 |
skeletal system | 1.10e-14 | 100 |
neural tube | 2.78e-08 | 56 |
neural rod | 2.78e-08 | 56 |
future spinal cord | 2.78e-08 | 56 |
neural keel | 2.78e-08 | 56 |
lateral plate mesoderm | 5.76e-08 | 203 |
regional part of nervous system | 8.40e-08 | 53 |
regional part of brain | 8.40e-08 | 53 |
musculoskeletal system | 1.11e-07 | 167 |
adult organism | 1.71e-07 | 114 |
embryo | 2.21e-07 | 592 |
brain | 2.92e-07 | 68 |
future brain | 2.92e-07 | 68 |
embryonic structure | 5.01e-07 | 564 |
central nervous system | 9.70e-07 | 81 |