FFCP PHASE1:Hg19::chr3:48507621..48507689,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:48507621..48507689,+
|short_description=p1@TREX1
|description=CAGE_peak_1_at_TREX1_5end
|association_with_transcript=0bp_to_ENST00000456089,ENST00000492235...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11277 | |EntrezGene=11277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12269 | |HGNC=12269 | ||
|TSSclassifier=strong | |||
|UniProt=C9J052 | |UniProt=C9J052 | ||
|association_with_transcript=0bp_to_ENST00000456089,ENST00000492235_5end | |||
|cluster_id=chr3:48507621..48507689,+ | |||
|coexpression_cluster_id=C4333 | |||
|description=CAGE_peak_1_at_TREX1_5end | |||
|id=chr3:48507621..48507689,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.75e-47!140;CL:0002087!1.65e-42!119;CL:0002031!4.07e-40!124;CL:0000037!1.73e-36!172;CL:0000566!1.73e-36!172;CL:0000988!1.13e-35!182;CL:0002032!1.51e-33!165;CL:0000837!1.51e-33!165;CL:0000766!2.02e-33!76;CL:0002009!1.98e-32!65;CL:0002194!2.63e-32!63;CL:0000576!2.63e-32!63;CL:0000040!2.63e-32!63;CL:0000559!2.63e-32!63;CL:0000557!7.54e-30!71;CL:0000839!1.88e-29!70;CL:0000860!2.89e-27!45;CL:0002057!1.69e-26!42;CL:0000763!3.46e-22!112;CL:0000049!3.46e-22!112;CL:0000134!5.56e-21!358;CL:0002320!2.18e-20!365;CL:0000219!1.40e-19!390;CL:0000048!1.81e-18!430;CL:0000723!1.34e-17!436;CL:0000034!5.51e-16!444;CL:0000838!7.63e-11!52;CL:0000542!2.11e-10!53;CL:0000051!2.11e-10!53;CL:0000945!4.02e-08!24;CL:0000826!4.02e-08!24;CL:0002371!7.76e-08!591;CL:0002393!8.93e-07!9;CL:0002397!8.93e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.73e-19;33!CL:0002057;2.73e-19;33!CL:0000473;1.84e-18;39!CL:0000234;1.84e-18;39!CL:0000576;3.18e-18;48!CL:0000766;2.23e-14;69!CL:0002087;7.80e-12;104!CL:0000738;4.52e-11;136!CL:0000945;4.09e-08;24!CL:0000542;2.84e-07;53!CL:0000219;8.10e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.29e-47,136;CL:0002087,2.12e-42,115;CL:0002031,6.04e-40,120;CL:0000037,4.74e-36,168;CL:0000988,6.80e-35,177;CL:0000766,1.41e-33,72;CL:0002032,4.05e-33,161;CL:0000837,4.05e-33,161;CL:0002009,9.65e-33,61;CL:0002194,1.18e-32,59;CL:0000576,1.18e-32,59;CL:0000040,1.18e-32,59;CL:0000559,1.18e-32,59;CL:0000557,5.62e-30,67;CL:0000839,1.39e-29,66;CL:0000473,2.78e-29,48;CL:0000234,2.78e-29,48;CL:0000860,1.67e-26,42;CL:0002057,1.67e-26,42;CL:0000763,7.58e-22,108;CL:0000049,7.58e-22,108;CL:0000134,7.23e-20,354;CL:0002320,2.74e-19,361;CL:0000219,1.74e-18,386;CL:0000048,3.17e-17,427;CL:0000723,2.19e-16,433;CL:0000034,8.68e-15,441;CL:0000838,7.60e-11,52;CL:0000542,2.10e-10,53;CL:0000051,2.10e-10,53;CL:0000945,4.01e-08,24;CL:0000826,4.01e-08,24;CL:0002393,8.91e-07,9;CL:0002397,8.91e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;3.87e-19;42!CL:0000051;2.84e-07;53!CL:0000049;8.77e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!7.97e-38!112;UBERON:0002390!3.56e-36!102;UBERON:0003061!3.56e-36!102;UBERON:0002371!2.16e-30!80;UBERON:0001474!6.06e-27!86;UBERON:0002405!9.94e-23!115;UBERON:0004765!9.78e-22!101;UBERON:0001434!9.78e-22!101;UBERON:0002384!2.05e-18!375;UBERON:0003081!3.71e-18!216;UBERON:0002204!7.42e-15!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.05e-37,108;UBERON:0002390,4.17e-36,98;UBERON:0003061,4.17e-36,98;UBERON:0002405,1.47e-32,93;UBERON:0002371,2.03e-30,76;UBERON:0001474,7.70e-27,82;UBERON:0004765,1.10e-21,90;UBERON:0001434,4.80e-20,100;UBERON:0003081,6.48e-19,203;UBERON:0002384,2.16e-17,371;UBERON:0002204,1.70e-13,167;UBERON:0000926,5.70e-08,315;UBERON:0004120,5.70e-08,315;UBERON:0006603,5.70e-08,315 | |||
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| ||
|short_description=p1@TREX1 | |||
}} | }} |
Latest revision as of 14:10, 18 September 2015
Short description: | p1@TREX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TREX1_5end |
Coexpression cluster: | C4333_CD14_Mesenchymal_Eosinophils_CD14CD16_Smooth_xeroderma_Monocytederived |
Association with transcript: | 0bp_to_ENST00000456089, ENST00000492235_5end |
EntrezGene: | TREX1 |
HGNC: | 12269 |
UniProt: | C9J052 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.05e-37 | 108 |
hematopoietic system | 4.17e-36 | 98 |
blood island | 4.17e-36 | 98 |
immune system | 1.47e-32 | 93 |
bone marrow | 2.03e-30 | 76 |
bone element | 7.70e-27 | 82 |
skeletal element | 1.10e-21 | 90 |
skeletal system | 4.80e-20 | 100 |
lateral plate mesoderm | 6.48e-19 | 203 |
connective tissue | 2.16e-17 | 371 |
musculoskeletal system | 1.70e-13 | 167 |
mesoderm | 5.70e-08 | 315 |
mesoderm-derived structure | 5.70e-08 | 315 |
presumptive mesoderm | 5.70e-08 | 315 |