FFCP PHASE1:Hg19::chr1:170633262..170633285,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5396 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |||
|TSSclassifier=strong | |||
|UniProt=P54821 | |||
|association_with_transcript=-27bp_to_NM_006902,NM_022716,uc001ghe.2,uc001ghf.2_5end | |||
|cluster_id=chr1:170633262..170633285,+ | |||
|coexpression_cluster_id=C851 | |||
|description=CAGE_peak_3_at_PRRX1_5end | |||
|id=chr1:170633262..170633285,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.07e-41!180;CL:0000057!1.32e-23!75;CL:0000680!7.82e-17!57;CL:0000056!7.82e-17!57;CL:0000355!7.82e-17!57;CL:0000187!6.23e-16!54;CL:0000183!3.35e-14!59;CL:0000393!5.74e-14!60;CL:0000211!5.74e-14!60;CL:0000192!7.44e-12!42;CL:0000514!7.44e-12!42;CL:0000359!2.28e-11!32;CL:0002620!1.07e-10!23;CL:0002334!1.82e-07!12;CL:0002570!9.27e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.19e-11;32!CL:0002620;2.58e-11;23!CL:0000057;1.70e-09;73!CL:0000187;1.71e-09;55!CL:0000192;4.12e-09;43!CL:0002334;2.94e-08;12!CL:0000393;4.53e-08;61!CL:0000211;4.53e-08;61!CL:0002320;1.47e-07;188!CL:0002570;1.72e-07;8!CL:0002494;3.21e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.30e-24,76;CL:0000680,4.73e-18,58;CL:0000056,4.73e-18,58;CL:0000355,4.73e-18,58;CL:0000187,4.99e-17,55;CL:0000393,7.76e-15,61;CL:0000211,7.76e-15,61;CL:0000192,1.98e-12,43;CL:0000514,1.98e-12,43;CL:0000359,3.02e-12,32;CL:0002620,2.23e-11,23;CL:0000048,6.48e-09,427;CL:0002334,2.68e-08,12;CL:0000723,3.89e-08,433;CL:0002570,1.71e-07,8;CL:0002494,3.10e-07,16;CL:0000034,3.61e-07,441;CL:0002539,9.70e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000355;1.74e-09;58!CL:0000514;4.12e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.11e-28!83;UBERON:0002329!4.11e-28!83;UBERON:0003077!4.11e-28!83;UBERON:0003059!4.11e-28!83;UBERON:0007282!4.11e-28!83;UBERON:0009618!4.11e-28!83;UBERON:0007285!4.11e-28!83;UBERON:0004290!2.23e-24!70;UBERON:0000486!2.69e-19!82;UBERON:0001134!6.29e-19!61;UBERON:0002036!6.29e-19!61;UBERON:0003082!6.29e-19!61;UBERON:0002385!8.34e-19!63;UBERON:0001015!8.34e-19!63;UBERON:0000383!8.34e-19!63;UBERON:0000475!1.35e-15!365;UBERON:0003102!1.23e-12!95;UBERON:0004872!5.69e-12!84;UBERON:0005256!6.62e-11!143;UBERON:0001637!1.08e-10!42;UBERON:0003509!1.08e-10!42;UBERON:0004572!1.08e-10!42;UBERON:0000481!3.08e-10!347;UBERON:0000468!5.45e-10!659;UBERON:0004573!6.57e-10!33;UBERON:0004571!6.57e-10!33;UBERON:0002199!6.93e-10!45;UBERON:0002416!6.93e-10!45;UBERON:0007100!9.03e-10!27;UBERON:0000948!1.83e-09!24;UBERON:0005498!1.83e-09!24;UBERON:0004140!1.83e-09!24;UBERON:0009881!1.83e-09!24;UBERON:0004141!1.83e-09!24;UBERON:0003084!1.83e-09!24;UBERON:0007005!1.83e-09!24;UBERON:0004139!1.83e-09!24;UBERON:0004291!1.83e-09!24;UBERON:0000479!9.64e-09!787;UBERON:0002097!1.27e-08!40;UBERON:0001981!5.41e-08!60;UBERON:0007500!5.41e-08!60;UBERON:0004537!5.41e-08!60;UBERON:0006965!5.41e-08!60;UBERON:0000119!8.60e-08!312;UBERON:0001013!1.91e-07!14;UBERON:0002100!2.24e-07!216;UBERON:0007023!2.77e-07!115;UBERON:0002067!3.14e-07!9;UBERON:0004016!3.14e-07!9;UBERON:0010083!3.14e-07!9;UBERON:0000483!3.88e-07!309;UBERON:0000467!8.81e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.23e-12;31!UBERON:0001015;2.23e-12;31!UBERON:0000383;2.23e-12;31!UBERON:0007100;5.18e-10;25!UBERON:0002204;9.50e-10;70!UBERON:0000948;1.18e-09;22!UBERON:0001134;3.86e-09;16!UBERON:0002036;3.86e-09;16!UBERON:0004573;6.67e-09;33!UBERON:0004571;6.67e-09;33!UBERON:0001013;2.16e-08;14!UBERON:0002384;2.27e-08;198!UBERON:0002067;4.99e-08;9!UBERON:0002097;8.77e-08;41!UBERON:0002199;1.19e-07;46!UBERON:0002416;1.19e-07;46!UBERON:0001637;2.64e-07;42!UBERON:0003509;2.64e-07;42!UBERON:0004572;2.64e-07;42!UBERON:0003102;4.14e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.25e-27,73;UBERON:0003077,1.29e-26,72;UBERON:0007285,1.29e-26,72;UBERON:0002329,1.56e-26,71;UBERON:0003059,1.56e-26,71;UBERON:0007282,1.56e-26,71;UBERON:0004290,1.56e-26,71;UBERON:0009618,1.56e-26,71;UBERON:0007503,9.55e-22,78;UBERON:0000486,1.45e-21,83;UBERON:0001134,2.10e-20,62;UBERON:0002036,2.10e-20,62;UBERON:0003082,2.10e-20,62;UBERON:0002385,7.34e-20,64;UBERON:0001015,7.34e-20,64;UBERON:0000383,7.34e-20,64;UBERON:0003102,1.94e-13,99;UBERON:0004872,1.21e-12,83;UBERON:0002199,1.38e-11,46;UBERON:0002416,1.38e-11,46;UBERON:0005256,1.98e-11,122;UBERON:0003104,3.49e-11,160;UBERON:0009142,3.49e-11,160;UBERON:0007100,6.33e-11,27;UBERON:0000948,1.41e-10,24;UBERON:0005498,1.41e-10,24;UBERON:0004140,1.41e-10,24;UBERON:0009881,1.41e-10,24;UBERON:0004141,1.41e-10,24;UBERON:0003084,1.41e-10,24;UBERON:0007005,1.41e-10,24;UBERON:0004139,1.41e-10,24;UBERON:0004291,1.41e-10,24;UBERON:0001637,1.49e-10,42;UBERON:0003509,1.49e-10,42;UBERON:0004572,1.49e-10,42;UBERON:0002097,4.99e-10,41;UBERON:0004573,6.99e-10,33;UBERON:0004571,6.99e-10,33;UBERON:0000479,8.55e-10,773;UBERON:0000926,3.87e-09,315;UBERON:0004120,3.87e-09,315;UBERON:0006603,3.87e-09,315;UBERON:0007500,1.66e-08,59;UBERON:0001981,1.66e-08,59;UBERON:0004537,1.66e-08,59;UBERON:0006965,1.66e-08,59;UBERON:0001013,1.94e-08,14;UBERON:0002067,4.97e-08,9;UBERON:0004016,4.97e-08,9;UBERON:0010083,4.97e-08,9;UBERON:0010314,2.35e-07,132;UBERON:0002204,8.89e-07,167;UBERON:0000490,9.05e-07,148;UBERON:0004237,9.70e-07,10;UBERON:0004695,9.70e-07,10;UBERON:0002111,9.70e-07,10;UBERON:0004178,9.70e-07,10 | |||
|phase1_expression=11.9907730318567,10.7050261945492,4.93340414335899,9.00659685178174,1.78784437770915,13.9574163856059,0,10.7392378482561,10.1862394997937,0,0.697801167972428,0,0,7.79728023648294,8.28493439319789,17.4804538077462,13.8619741445515,17.527442169297,14.6379839637152,0.984968464614303,3.26401105990805,0.313454721478088,1.71741592278634,2.87436292653057,2.25976751270645,0.840547463227464,0.985207073399349,0.865818594450472,0,0,0.619264493264304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,2.68280343881454,2.55725123687061,9.39741796199872,7.01873074890245,10.8634889220618,15.905718941022,8.27279279514481,0.0945348171640679,0,0.263504357079378,2.75056058545197,0,0,0,0,0,0,0,0,0.596287222100115,4.30117297553062,0.347140501607594,0,2.09749718104953,0,0.417989933073621,0,0.71153252537342,0.33472061276467,0,0,0,0.735326160691737,0,0,0,0,0,1.89853131913626,1.09921046358244,0,0,0,11.9273268406876,29.2516481945179,3.57504788195691,16.0628507619336,25.8907919004801,10.0921968025615,5.33744978648525,3.20667812942308,10.5811752035921,7.67850830797222,9.80771418680752,0.302714855289863,0.576175924479999,4.45210720484214,18.4174445329889,14.2617955386112,19.8766745133895,16.4408298101271,26.2234169876373,28.9328661806632,14.6991003303523,20.0219937218182,14.8789124893102,29.7000714320513,31.1556330890982,0,0.718618141816238,19.1903169907635,20.894792818618,20.2256804303454,32.0453663243012,31.874730763098,39.512609492435,4.76415169272088,15.4275086692421,9.61008249683553,5.72216133130817,5.10154863343484,11.026620628513,5.92573242104947,11.353128236227,11.8143432568886,23.8720662644937,4.54380793639406,4.97069452668416,30.066166568299,4.9701342952326,9.87370562630875,5.76506013855658,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0.36497735907583,18.7739438795779,24.4431556513296,16.5761905622977,11.6091982007995,12.9938306700525,0,0,0,0.110293972732394,0,0,0.134831308160164,0,0.38474715694639,0,0,0.8231480226628,0,0,0,0,0,0,3.60292401626904,0,0,0,0,3.9096996637239,4.15973914111831,2.88662684050547,0,3.05262605013136,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0.0895585227028483,0,0,0,0,0,0.288239906833923,0,0,0,0,3.4214489204541,0.514137463516618,0,0,9.4190110850103,11.7709218584986,17.0144823104604,1.03417372606222,14.3062578340753,13.524844040896,5.58470044828228,10.4007436911366,5.14414748524284,9.92943924162948,7.72624319146688,0,0.542621605391443,1.64648067356154,15.961073030393,0,4.75171123760058,0,0,0,0,0,0,11.9812427745791,11.4861935834114,48.4965477138443,8.25253448005201,9.04095819221687,5.19276793395697,0,0,0,0,0.76228387266739,1.30139853857622,2.31986643833309,0.502548796003046,1.91381625495949,0,0,0,7.23879801142925,4.00136416847742,6.23909554509392,27.8680954451282,23.0173395548339,14.3509197680881,19.211192058805,14.7463588866582,9.09630016223939,16.5556914068008,14.6129631677796,20.2806085395873,15.6390506042549,2.34961388955289,3.77457766191941,0,0,0,0,0,1.5119514666484,17.1194387394956,9.821566290436,18.5235662325829,5.25370511948374,12.7926812266676,4.82561763430822,5.93672265779964,26.3698576402541,23.2605860160196,22.9956036838666,23.8857037424466,28.0067012088502,0,0,0,0.918515585316854,9.46874073634929,8.39196255740314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28225062558195,0.328014645699706,1.62689197332152,1.44257416306811,0.824125183365091,0,2.29706215198469,1.30012049207304,11.2478750890912,6.86362099874066,10.7834031980251,8.44270210993712,11.0269257987624,7.51941714077915,10.5862186557387,12.698767484999,11.3070685271356,0,0,0,0.10115778085555,8.36721988735114,8.18512101759664,17.425931754015,21.8703841925023,6.38767236380426,8.69932992075073,7.22764454505288,5.43874569619567,11.9090678195094,3.79655309662471,0.38126038784765,0.511795582622668,10.698474700848,15.9101623962968,8.63443504219153,2.69808686374972,0.823611089208164,1.29593642580255,9.50257663394585,7.92551605865041,8.00391066854064,0,8.77368562672624,4.22600587027022,9.96449353278296,2.82810863907426,21.4715421578461,15.9895949628376,7.96126770289464,3.5076070820301,2.89387767133344,13.7737897929793,1.21746226177622,7.12594045629425,9.57765048609621,2.86822704408103,1.3754865741837,4.280052617775,9.22378766583554,9.28873595309722,8.23237232399755,4.9331512589543,8.04849856563461,0,0.670302275535787,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.8160480112169,0,0,0,0,0.593929361665277,0,0,0.844016498463076,0,0,0,6.97367958878744,1.65770349318689,0,0.102268682502155,1.84627208191604,8.3980688668688,0,0,0,3.64980600856654,0,23.3387679303737,1.93866549219044,1.02044907978036,0,0,0,8.69999490521752,0.227586896570999,0,0,0,0,2.08349993919951,0.885741385813839,0.60298219312704,0,0.774054819518572,0.591095237907095,3.07139556015562,0,0,17.1599076463467,0.7975943909290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| |||
|short_description=p3@PRRX1 | |||
}} |
Latest revision as of 14:25, 18 September 2015
Short description: | p3@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRRX1_5end |
Coexpression cluster: | C851_Fibroblast_mesenchymal_Myoblast_normal_Olfactory_skeletal_Osteoblast |
Association with transcript: | -27bp_to_NM_006902, NM_022716, uc001ghe.2, uc001ghf.2_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | P54821 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.30e-24 | 76 |
muscle precursor cell | 4.73e-18 | 58 |
myoblast | 4.73e-18 | 58 |
multi-potent skeletal muscle stem cell | 4.73e-18 | 58 |
muscle cell | 4.99e-17 | 55 |
electrically responsive cell | 7.76e-15 | 61 |
electrically active cell | 7.76e-15 | 61 |
smooth muscle cell | 1.98e-12 | 43 |
smooth muscle myoblast | 1.98e-12 | 43 |
vascular associated smooth muscle cell | 3.02e-12 | 32 |
skin fibroblast | 2.23e-11 | 23 |
multi fate stem cell | 6.48e-09 | 427 |
preadipocyte | 2.68e-08 | 12 |
somatic stem cell | 3.89e-08 | 433 |
mesenchymal stem cell of adipose | 1.71e-07 | 8 |
cardiocyte | 3.10e-07 | 16 |
stem cell | 3.61e-07 | 441 |
aortic smooth muscle cell | 9.70e-07 | 10 |