FFCP PHASE1:Hg19::chr11:60681611..60681706,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79073 | |EntrezGene=79073 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28771 | |HGNC=28771 | ||
|TSSclassifier=strong | |||
|UniProt=E7ETZ3,F5H679 | |UniProt=E7ETZ3,F5H679 | ||
|association_with_transcript=0bp_to_ENST00000446886,ENST00000540407_5end | |association_with_transcript=0bp_to_ENST00000446886,ENST00000540407_5end | ||
|cluster_id=chr11:60681611..60681706,+ | |||
|description=CAGE_peak_1_at_TMEM109_5end | |description=CAGE_peak_1_at_TMEM109_5end | ||
|id=chr11:60681611..60681706,+ | |id=chr11:60681611..60681706,+ | ||
|ontology_enrichment_celltype=CL:0000115!1.82e-15!35;CL:0002078!5.15e-15!44;CL:0000213!4.49e-14!57;CL:0000215!4.49e-14!57;CL:0002139!1.39e-12!24;CL:0000222!7.07e-12!119;CL:0000071!1.83e-10!18;CL:0002546!1.83e-10!18;CL:1000497!4.06e-08!18;CL:0002518!4.06e-08!18;CL:0000057!8.04e-08!75;CL:0002371!1.19e-07!591;CL:1000449!2.50e-07!16 | |ontology_enrichment_celltype=CL:0000115!1.82e-15!35;CL:0002078!5.15e-15!44;CL:0000213!4.49e-14!57;CL:0000215!4.49e-14!57;CL:0002139!1.39e-12!24;CL:0000222!7.07e-12!119;CL:0000071!1.83e-10!18;CL:0002546!1.83e-10!18;CL:1000497!4.06e-08!18;CL:0002518!4.06e-08!18;CL:0000057!8.04e-08!75;CL:0002371!1.19e-07!591;CL:1000449!2.50e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000115;1.05e-13;36!CL:0002139;1.44e-12;24!CL:0002078;7.33e-11;45!CL:0000071;1.83e-10;18!CL:0000213;5.96e-09;58!CL:0000215;5.96e-09;58!CL:1000497;3.41e-08;17!CL:0002518;3.41e-08;17!CL:1000449;2.06e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,4.21e-16,36;CL:0002078,1.27e-15,45;CL:0000213,1.23e-14,58;CL:0000215,1.23e-14,58;CL:0002139,1.39e-12,24;CL:0000222,2.26e-12,121;CL:0000071,1.83e-10,18;CL:0002546,1.83e-10,18;CL:1000497,3.31e-08,17;CL:0002518,3.31e-08,17;CL:0000057,1.29e-07,76;CL:1000449,2.04e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002546;1.83e-10;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!5.41e-14!69;UBERON:0002049!1.32e-13!79;UBERON:0007798!1.32e-13!79;UBERON:0004872!4.12e-12!84;UBERON:0003914!1.16e-11!118;UBERON:0001009!3.19e-11!113;UBERON:0004535!9.96e-11!110;UBERON:0001981!1.14e-10!60;UBERON:0007500!1.14e-10!60;UBERON:0004537!1.14e-10!60;UBERON:0006965!1.14e-10!60;UBERON:0001986!1.83e-10!18;UBERON:0004638!1.83e-10!18;UBERON:0004852!1.83e-10!18;UBERON:0006914!2.25e-10!25;UBERON:0000487!8.44e-10!22;UBERON:0004923!1.44e-07!57;UBERON:0004876!1.57e-07!20;UBERON:0006555!2.08e-07!17;UBERON:0005103!2.08e-07!17;UBERON:0000083!2.08e-07!17;UBERON:0009201!2.08e-07!17;UBERON:0004819!2.08e-07!17;UBERON:0006553!2.08e-07!17;UBERON:0003074!2.08e-07!17;UBERON:0003060!2.08e-07!17;UBERON:0004211!2.50e-07!16;UBERON:0001285!2.50e-07!16;UBERON:0007684!2.50e-07!16;UBERON:0003220!2.50e-07!16;UBERON:0004208!2.50e-07!16;UBERON:0000080!4.22e-07!18;UBERON:0002120!4.22e-07!18;UBERON:0004875!4.22e-07!18;UBERON:0005721!4.22e-07!18;UBERON:0005754!4.22e-07!18;UBERON:0007297!4.22e-07!18 | |ontology_enrichment_uberon=UBERON:0000055!5.41e-14!69;UBERON:0002049!1.32e-13!79;UBERON:0007798!1.32e-13!79;UBERON:0004872!4.12e-12!84;UBERON:0003914!1.16e-11!118;UBERON:0001009!3.19e-11!113;UBERON:0004535!9.96e-11!110;UBERON:0001981!1.14e-10!60;UBERON:0007500!1.14e-10!60;UBERON:0004537!1.14e-10!60;UBERON:0006965!1.14e-10!60;UBERON:0001986!1.83e-10!18;UBERON:0004638!1.83e-10!18;UBERON:0004852!1.83e-10!18;UBERON:0006914!2.25e-10!25;UBERON:0000487!8.44e-10!22;UBERON:0004923!1.44e-07!57;UBERON:0004876!1.57e-07!20;UBERON:0006555!2.08e-07!17;UBERON:0005103!2.08e-07!17;UBERON:0000083!2.08e-07!17;UBERON:0009201!2.08e-07!17;UBERON:0004819!2.08e-07!17;UBERON:0006553!2.08e-07!17;UBERON:0003074!2.08e-07!17;UBERON:0003060!2.08e-07!17;UBERON:0004211!2.50e-07!16;UBERON:0001285!2.50e-07!16;UBERON:0007684!2.50e-07!16;UBERON:0003220!2.50e-07!16;UBERON:0004208!2.50e-07!16;UBERON:0000080!4.22e-07!18;UBERON:0002120!4.22e-07!18;UBERON:0004875!4.22e-07!18;UBERON:0005721!4.22e-07!18;UBERON:0005754!4.22e-07!18;UBERON:0007297!4.22e-07!18 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.83e-10;18!UBERON:0001986;1.83e-10;18!UBERON:0004852;1.83e-10;18!UBERON:0006914;2.10e-10;25!UBERON:0000487;7.94e-10;22!UBERON:0000055;3.99e-08;65!UBERON:0003914;7.76e-08;74!UBERON:0006555;2.06e-07;15!UBERON:0004819;2.06e-07;15!UBERON:0001285;2.06e-07;15!UBERON:0007684;2.06e-07;15!UBERON:0000353;3.20e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.34e-14,68;UBERON:0002049,6.33e-14,78;UBERON:0007798,6.33e-14,78;UBERON:0004872,2.16e-12,83;UBERON:0003914,1.35e-11,117;UBERON:0001009,1.95e-11,112;UBERON:0007500,5.41e-11,59;UBERON:0001981,5.41e-11,59;UBERON:0004537,5.41e-11,59;UBERON:0006965,5.41e-11,59;UBERON:0004535,6.15e-11,109;UBERON:0004638,1.83e-10,18;UBERON:0001986,1.83e-10,18;UBERON:0004852,1.83e-10,18;UBERON:0006914,2.25e-10,25;UBERON:0000487,8.44e-10,22;UBERON:0006555,1.74e-07,16;UBERON:0004819,1.74e-07,16;UBERON:0004211,2.04e-07,15;UBERON:0009773,2.04e-07,15;UBERON:0001231,2.04e-07,15;UBERON:0001285,2.04e-07,15;UBERON:0007684,2.04e-07,15;UBERON:0004208,2.04e-07,15;UBERON:0000353,3.15e-07,15 | |||
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| ||
|short_description=p1@TMEM109 | |short_description=p1@TMEM109 | ||
}} | }} |
Latest revision as of 14:27, 18 September 2015
Short description: | p1@TMEM109 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMEM109_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000446886, ENST00000540407_5end |
EntrezGene: | TMEM109 |
HGNC: | 28771 |
UniProt: | E7ETZ3F5H679 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 4.21e-16 | 36 |
meso-epithelial cell | 1.27e-15 | 45 |
lining cell | 1.23e-14 | 58 |
barrier cell | 1.23e-14 | 58 |
endothelial cell of vascular tree | 1.39e-12 | 24 |
mesodermal cell | 2.26e-12 | 121 |
blood vessel endothelial cell | 1.83e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.83e-10 | 18 |
kidney cell | 3.31e-08 | 17 |
kidney epithelial cell | 3.31e-08 | 17 |
fibroblast | 1.29e-07 | 76 |
epithelial cell of nephron | 2.04e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
vessel | 2.34e-14 | 68 |
vasculature | 6.33e-14 | 78 |
vascular system | 6.33e-14 | 78 |
splanchnic layer of lateral plate mesoderm | 2.16e-12 | 83 |
epithelial tube | 1.35e-11 | 117 |
circulatory system | 1.95e-11 | 112 |
epithelial tube open at both ends | 5.41e-11 | 59 |
blood vessel | 5.41e-11 | 59 |
blood vasculature | 5.41e-11 | 59 |
vascular cord | 5.41e-11 | 59 |
cardiovascular system | 6.15e-11 | 109 |
blood vessel endothelium | 1.83e-10 | 18 |
endothelium | 1.83e-10 | 18 |
cardiovascular system endothelium | 1.83e-10 | 18 |
squamous epithelium | 2.25e-10 | 25 |
simple squamous epithelium | 8.44e-10 | 22 |
excretory tube | 1.74e-07 | 16 |
kidney epithelium | 1.74e-07 | 16 |
nephron epithelium | 2.04e-07 | 15 |
renal tubule | 2.04e-07 | 15 |
nephron tubule | 2.04e-07 | 15 |
nephron | 2.04e-07 | 15 |
uriniferous tubule | 2.04e-07 | 15 |
nephrogenic mesenchyme | 2.04e-07 | 15 |
parenchyma | 3.15e-07 | 15 |