FFCP PHASE1:Hg19::chr17:1248340..1248351,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5048 | |EntrezGene=5048 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=8574 | |HGNC=8574 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=13bp_to_L13388_5end | |association_with_transcript=13bp_to_L13388_5end | ||
|cluster_id=chr17:1248340..1248351,- | |||
|description=CAGE_peak_25_at_PAFAH1B1_5end | |description=CAGE_peak_25_at_PAFAH1B1_5end | ||
|id=chr17:1248340..1248351,- | |id=chr17:1248340..1248351,- | ||
|ontology_enrichment_celltype=CL:0000839!3.97e-07!70 | |ontology_enrichment_celltype=CL:0000839!3.97e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000235;1.44e-17;6 | |ontology_enrichment_celltype_v019=CL:0000235;1.44e-17;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000235,1.71e-17,6 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.47e-09;3 | |ontology_enrichment_development_v019=UBERON:0006215;1.47e-09;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!8.47e-18!9;UBERON:0001557!1.24e-07!19 | |ontology_enrichment_uberon=UBERON:0001737!8.47e-18!9;UBERON:0001557!1.24e-07!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0000349;1.10e-20;5!UBERON:0001871;3.29e-15;6!UBERON:0002771;6.85e-14;2!UBERON:0001876;1.14e-13;2!UBERON:0001954;1.14e-13;2!UBERON:0003022;1.14e-13;2!UBERON:0002421;1.14e-13;2!UBERON:0002600;1.14e-13;2!UBERON:0002619;2.09e-10;22!UBERON:0000956;2.78e-09;25!UBERON:0000203;2.78e-09;25!UBERON:0003528;4.16e-07;34!UBERON:0002791;4.16e-07;32!UBERON:0002020;4.16e-07;34!UBERON:0001869;4.16e-07;32!UBERON:0001893;5.94e-07;34 | |ontology_enrichment_uberon_v019=UBERON:0000349;1.10e-20;5!UBERON:0001871;3.29e-15;6!UBERON:0002771;6.85e-14;2!UBERON:0001876;1.14e-13;2!UBERON:0001954;1.14e-13;2!UBERON:0003022;1.14e-13;2!UBERON:0002421;1.14e-13;2!UBERON:0002600;1.14e-13;2!UBERON:0002619;2.09e-10;22!UBERON:0000956;2.78e-09;25!UBERON:0000203;2.78e-09;25!UBERON:0003528;4.16e-07;34!UBERON:0002791;4.16e-07;32!UBERON:0002020;4.16e-07;34!UBERON:0001869;4.16e-07;32!UBERON:0001893;5.94e-07;34 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000349,7.35e-21,5;UBERON:0001871,2.65e-15,6;UBERON:0002771,6.43e-14,2;UBERON:0001876,8.28e-14,2;UBERON:0001954,9.40e-14,2;UBERON:0003022,9.40e-14,2;UBERON:0002421,9.40e-14,2;UBERON:0002600,9.40e-14,2;UBERON:0002619,1.81e-10,22;UBERON:0000956,2.45e-09,25;UBERON:0000203,2.45e-09,25;UBERON:0000073,8.16e-08,53;UBERON:0002616,8.16e-08,53;UBERON:0001017,1.01e-07,81;UBERON:0002791,1.73e-07,32;UBERON:0001869,1.73e-07,32;UBERON:0001049,2.02e-07,56;UBERON:0005068,2.02e-07,56;UBERON:0006241,2.02e-07,56;UBERON:0007135,2.02e-07,56;UBERON:0003528,4.30e-07,34;UBERON:0002020,4.30e-07,34;UBERON:0001893,4.30e-07,34;UBERON:0001016,5.59e-07,89 | |||
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| ||
|short_description=p25@PAFAH1B1 | |short_description=p25@PAFAH1B1 | ||
}} | }} |
Latest revision as of 16:17, 18 September 2015
Short description: | p25@PAFAH1B1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_PAFAH1B1_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_L13388_5end |
EntrezGene: | PAFAH1B1 |
HGNC: | 8574 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 1.71e-17 | 6 |
Ontology term | p-value | n |
---|---|---|
limbic system | 7.35e-21 | 5 |
temporal lobe | 2.65e-15 | 6 |
middle temporal gyrus | 6.43e-14 | 2 |
amygdala | 8.28e-14 | 2 |
Ammon's horn | 9.40e-14 | 2 |
lobe parts of cerebral cortex | 9.40e-14 | 2 |
hippocampal formation | 9.40e-14 | 2 |
limbic lobe | 9.40e-14 | 2 |
regional part of cerebral cortex | 1.81e-10 | 22 |
cerebral cortex | 2.45e-09 | 25 |
pallium | 2.45e-09 | 25 |
regional part of nervous system | 8.16e-08 | 53 |
regional part of brain | 8.16e-08 | 53 |
central nervous system | 1.01e-07 | 81 |
regional part of telencephalon | 1.73e-07 | 32 |
cerebral hemisphere | 1.73e-07 | 32 |
neural tube | 2.02e-07 | 56 |
neural rod | 2.02e-07 | 56 |
future spinal cord | 2.02e-07 | 56 |
neural keel | 2.02e-07 | 56 |
brain grey matter | 4.30e-07 | 34 |
gray matter | 4.30e-07 | 34 |
telencephalon | 4.30e-07 | 34 |
nervous system | 5.59e-07 | 89 |