FFCP PHASE1:Hg19::chr4:77507358..77507478,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57619 | |EntrezGene=57619 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |HGNC=30422 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000481002,ENST00000484236,ENST00000485780_5end | |association_with_transcript=0bp_to_ENST00000481002,ENST00000484236,ENST00000485780_5end | ||
|cluster_id=chr4:77507358..77507478,+ | |||
|description=CAGE_peak_1_at_SHROOM3_5end | |description=CAGE_peak_1_at_SHROOM3_5end | ||
|id=chr4:77507358..77507478,+ | |id=chr4:77507358..77507478,+ | ||
|ontology_enrichment_celltype=CL:0000066!5.06e-12!254 | |ontology_enrichment_celltype=CL:0000066!5.06e-12!254 | ||
|ontology_enrichment_celltype_v019=CL:1000507;3.73e-08;10!CL:1000494;3.73e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.63e-09,253;CL:1000507,3.90e-08,10;CL:1000494,3.90e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.49e-07;29 | |||
|ontology_enrichment_disease=DOID:305!1.50e-14!106;DOID:0050687!5.83e-10!143;DOID:299!2.04e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;9.05e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.63e-12,106;DOID:0050687,2.14e-08,143;DOID:299,1.18e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.62e-24!115;UBERON:0000481!1.03e-19!347;UBERON:0000062!2.14e-19!511;UBERON:0000064!1.95e-14!219;UBERON:0000468!2.87e-13!659;UBERON:0004921!6.11e-13!129;UBERON:0004185!6.11e-13!129;UBERON:0004119!6.48e-13!169;UBERON:0000925!6.48e-13!169;UBERON:0006595!6.48e-13!169;UBERON:0003075!9.26e-13!86;UBERON:0007284!9.26e-13!86;UBERON:0001048!3.95e-12!168;UBERON:0000467!6.75e-12!625;UBERON:0001049!7.49e-12!57;UBERON:0005068!7.49e-12!57;UBERON:0006241!7.49e-12!57;UBERON:0007135!7.49e-12!57;UBERON:0002346!9.15e-12!90;UBERON:0000480!1.01e-11!626;UBERON:0000922!1.26e-11!612;UBERON:0001007!1.45e-11!155;UBERON:0001555!1.45e-11!155;UBERON:0007026!1.45e-11!155;UBERON:0002616!3.03e-11!59;UBERON:0000477!3.95e-11!286;UBERON:0000077!6.81e-11!130;UBERON:0005743!1.06e-10!86;UBERON:0002050!2.65e-10!605;UBERON:0005423!2.65e-10!605;UBERON:0000466!2.91e-10!126;UBERON:0000955!3.07e-10!69;UBERON:0006238!3.07e-10!69;UBERON:0000464!3.21e-10!104;UBERON:0000923!5.17e-10!604;UBERON:0005291!5.17e-10!604;UBERON:0006598!5.17e-10!604;UBERON:0002532!5.17e-10!604;UBERON:0001017!1.04e-09!82;UBERON:0004111!1.75e-09!241;UBERON:0000025!1.83e-09!194;UBERON:0000475!3.80e-09!365;UBERON:0004121!3.84e-09!169;UBERON:0000483!3.92e-09!309;UBERON:0000153!4.48e-09!129;UBERON:0007811!4.48e-09!129;UBERON:0000033!8.45e-09!123;UBERON:0000073!9.16e-09!94;UBERON:0001016!9.16e-09!94;UBERON:0000924!1.18e-08!173;UBERON:0006601!1.18e-08!173;UBERON:0000119!1.26e-08!312;UBERON:0002553!1.41e-08!70;UBERON:0003080!2.99e-08!42;UBERON:0003056!3.23e-08!61;UBERON:0001041!4.36e-08!98;UBERON:0003104!7.26e-08!238;UBERON:0009142!7.26e-08!238;UBERON:0002780!9.47e-08!41;UBERON:0001890!9.47e-08!41;UBERON:0006240!9.47e-08!41;UBERON:0005177!9.91e-08!107;UBERON:0000063!1.24e-07!97;UBERON:0005409!3.31e-07!35;UBERON:0000058!3.39e-07!26;UBERON:0003886!4.93e-07!63;UBERON:0000489!9.67e-07!32 | |ontology_enrichment_uberon=UBERON:0007023!8.62e-24!115;UBERON:0000481!1.03e-19!347;UBERON:0000062!2.14e-19!511;UBERON:0000064!1.95e-14!219;UBERON:0000468!2.87e-13!659;UBERON:0004921!6.11e-13!129;UBERON:0004185!6.11e-13!129;UBERON:0004119!6.48e-13!169;UBERON:0000925!6.48e-13!169;UBERON:0006595!6.48e-13!169;UBERON:0003075!9.26e-13!86;UBERON:0007284!9.26e-13!86;UBERON:0001048!3.95e-12!168;UBERON:0000467!6.75e-12!625;UBERON:0001049!7.49e-12!57;UBERON:0005068!7.49e-12!57;UBERON:0006241!7.49e-12!57;UBERON:0007135!7.49e-12!57;UBERON:0002346!9.15e-12!90;UBERON:0000480!1.01e-11!626;UBERON:0000922!1.26e-11!612;UBERON:0001007!1.45e-11!155;UBERON:0001555!1.45e-11!155;UBERON:0007026!1.45e-11!155;UBERON:0002616!3.03e-11!59;UBERON:0000477!3.95e-11!286;UBERON:0000077!6.81e-11!130;UBERON:0005743!1.06e-10!86;UBERON:0002050!2.65e-10!605;UBERON:0005423!2.65e-10!605;UBERON:0000466!2.91e-10!126;UBERON:0000955!3.07e-10!69;UBERON:0006238!3.07e-10!69;UBERON:0000464!3.21e-10!104;UBERON:0000923!5.17e-10!604;UBERON:0005291!5.17e-10!604;UBERON:0006598!5.17e-10!604;UBERON:0002532!5.17e-10!604;UBERON:0001017!1.04e-09!82;UBERON:0004111!1.75e-09!241;UBERON:0000025!1.83e-09!194;UBERON:0000475!3.80e-09!365;UBERON:0004121!3.84e-09!169;UBERON:0000483!3.92e-09!309;UBERON:0000153!4.48e-09!129;UBERON:0007811!4.48e-09!129;UBERON:0000033!8.45e-09!123;UBERON:0000073!9.16e-09!94;UBERON:0001016!9.16e-09!94;UBERON:0000924!1.18e-08!173;UBERON:0006601!1.18e-08!173;UBERON:0000119!1.26e-08!312;UBERON:0002553!1.41e-08!70;UBERON:0003080!2.99e-08!42;UBERON:0003056!3.23e-08!61;UBERON:0001041!4.36e-08!98;UBERON:0003104!7.26e-08!238;UBERON:0009142!7.26e-08!238;UBERON:0002780!9.47e-08!41;UBERON:0001890!9.47e-08!41;UBERON:0006240!9.47e-08!41;UBERON:0005177!9.91e-08!107;UBERON:0000063!1.24e-07!97;UBERON:0005409!3.31e-07!35;UBERON:0000058!3.39e-07!26;UBERON:0003886!4.93e-07!63;UBERON:0000489!9.67e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.85e-09;33!UBERON:0005409;2.29e-08;22!UBERON:0004211;3.73e-08;10!UBERON:0009773;3.73e-08;10!UBERON:0001231;3.73e-08;10!UBERON:0004810;3.73e-08;10!UBERON:0002113;1.02e-07;24!UBERON:0011143;1.02e-07;24!UBERON:0000489;2.32e-07;29!UBERON:0007023;2.59e-07;114!UBERON:0000956;9.06e-07;25!UBERON:0000203;9.06e-07;25 | |||
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| ||
|short_description=p1@SHROOM3 | |short_description=p1@SHROOM3 | ||
}} | }} |
Latest revision as of 18:03, 18 September 2015
Short description: | p1@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHROOM3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000481002, ENST00000484236, ENST00000485780_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.63e-09 | 253 |
kidney tubule cell | 3.90e-08 | 10 |
nephron tubule epithelial cell | 3.90e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.63e-12 | 106 |
cell type cancer | 2.14e-08 | 143 |
adenocarcinoma | 1.18e-07 | 25 |